Experiment set1IT035 for Pseudomonas simiae WCS417

Compare to:

Sodium D-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -6.7 -5.7 isopropylmalate isomerase compare
PS417_27040 -6.1 -5.4 3-phosphoglycerate dehydrogenase compare
PS417_01575 -5.9 -8.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25720 -5.5 -13.4 anthranilate synthase component II compare
PS417_18585 -5.4 -9.0 3-isopropylmalate dehydrogenase compare
PS417_23800 -5.3 -18.0 ketol-acid reductoisomerase compare
PS417_23545 -5.1 -3.5 gamma-glutamyl kinase compare
PS417_02510 -5.1 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_04415 -5.0 -14.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_00185 -5.0 -8.3 tryptophan synthase subunit beta compare
PS417_24745 -4.8 -9.5 gamma-glutamyl phosphate reductase compare
PS417_01855 -4.8 -4.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_18595 -4.8 -7.5 3-isopropylmalate dehydratase compare
PS417_26740 -4.8 -10.9 homoserine acetyltransferase compare
PS417_02005 -4.7 -14.6 glutamate synthase compare
PS417_18560 -4.7 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25725 -4.6 -17.6 anthranilate synthase component I compare
PS417_12855 -4.6 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08125 -4.6 -2.4 prephenate dehydratase compare
PS417_23805 -4.6 -8.2 acetolactate synthase 3 regulatory subunit compare
PS417_18530 -4.6 -7.9 O-succinylhomoserine sulfhydrylase compare
PS417_01850 -4.5 -10.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23810 -4.5 -13.8 acetolactate synthase 3 catalytic subunit compare
PS417_04420 -4.5 -13.3 histidinol dehydrogenase compare
PS417_27795 -4.4 -2.3 orotate phosphoribosyltransferase compare
PS417_00180 -4.3 -5.4 tryptophan synthase subunit alpha compare
PS417_16465 -4.2 -18.0 sirohydrochlorin ferrochelatase compare
PS417_26730 -4.2 -2.2 pyrroline-5-carboxylate reductase compare
PS417_01565 -4.1 -5.7 imidazole glycerol phosphate synthase compare
PS417_02000 -4.1 -19.2 glutamate synthase compare
PS417_24110 -4.1 -13.8 4Fe-4S ferredoxin conserved
PS417_27195 -4.1 -2.1 N-acetylglutamate synthase compare
PS417_28220 -4.0 -3.5 LysR family transcriptional regulator compare
PS417_25710 -3.9 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_24105 -3.9 -10.7 D-lactate transporter (lctP family) (from data) conserved
PS417_27835 -3.9 -14.4 endoribonuclease compare
PS417_12290 -3.8 -10.7 sulfite reductase compare
PS417_01560 -3.8 -5.7 imidazoleglycerol-phosphate dehydratase compare
PS417_07640 -3.7 -5.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23995 -3.7 -1.9 preprotein translocase subunit SecG compare
PS417_06375 -3.7 -1.9 deoxycytidine triphosphate deaminase compare
PS417_26995 -3.6 -16.1 phosphoserine phosphatase compare
PS417_23110 -3.5 -7.1 2-isopropylmalate synthase compare
PS417_05595 -3.4 -7.0 ornithine carbamoyltransferase compare
PS417_26745 -3.4 -4.3 methionine biosynthesis protein MetW compare
PS417_25715 -3.3 -5.1 anthranilate phosphoribosyltransferase compare
PS417_01580 -3.3 -2.5 imidazole glycerol phosphate synthase compare
PS417_02415 -3.2 -6.4 phosphoserine phosphatase compare
PS417_20125 -3.2 -7.1 phosphoribosylglycinamide formyltransferase compare
PS417_26890 -3.1 -6.1 dihydroxy-acid dehydratase compare
PS417_01605 -2.8 -3.2 phosphoglycerate mutase compare
PS417_20160 -2.7 -3.5 cysteine synthase compare
PS417_24155 -2.5 -4.6 ATP-binding protein compare
PS417_24765 -2.5 -5.8 membrane protein compare
PS417_20985 -2.4 -4.8 porin compare
PS417_01570 -2.3 -2.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_21125 -2.3 -11.4 phosphoadenosine phosphosulfate reductase compare
PS417_21705 -2.2 -8.3 arginine N-succinyltransferase compare
PS417_08195 -1.7 -10.5 hypothetical protein compare
PS417_13510 -1.7 -2.4 polyketide cyclase compare
PS417_23770 -1.7 -4.0 exodeoxyribonuclease V subunit alpha compare
PS417_08205 -1.7 -6.4 acetyltransferase compare
PS417_08230 -1.6 -3.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_19190 -1.6 -4.1 BolA family transcriptional regulator compare
PS417_23375 -1.6 -3.8 cytochrome C oxidase compare
PS417_01210 -1.5 -8.8 hypothetical protein compare
PS417_07170 -1.5 -4.4 hypothetical protein compare
PS417_08225 -1.5 -5.7 acetolactate synthase compare
PS417_08200 -1.5 -3.9 hypothetical protein compare
PS417_21020 -1.4 -11.6 phosphoenolpyruvate synthase conserved
PS417_27010 -1.4 -8.8 threonine dehydratase compare
PS417_08245 -1.4 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_22520 -1.4 -3.6 histidine kinase compare
PS417_21700 -1.4 -5.0 arginine N-succinyltransferase compare
PS417_23385 -1.3 -6.9 cytochrome o ubiquinol oxidase subunit I compare
PS417_03925 -1.3 -4.2 nicotinate-nucleotide pyrophosphorylase compare
PS417_21690 -1.3 -6.3 N-succinylarginine dihydrolase compare
PS417_18690 -1.3 -4.9 aromatic amino acid aminotransferase compare
PS417_23170 -1.3 -3.0 FeS assembly protein IscX compare
PS417_21510 -1.3 -1.7 histidine kinase compare
PS417_23370 -1.3 -5.7 protoheme IX farnesyltransferase compare
PS417_03560 -1.2 -3.3 GTP-binding protein compare
PS417_22385 -1.2 -7.7 quinolinate synthase A compare
PS417_21035 -1.2 -7.5 multidrug transporter compare
PS417_22115 -1.2 -5.0 transcriptional regulator compare
PS417_01710 -1.2 -4.1 histidine utilization repressor compare
PS417_20665 -1.1 -4.9 hypothetical protein compare
PS417_24835 -1.1 -6.1 hypothetical protein compare
PS417_23390 -1.1 -6.7 ubiquinol oxidase subunit II compare
PS417_23380 -1.1 -2.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_27435 -1.1 -5.0 polyphosphate kinase compare
PS417_04180 -1.1 -3.6 GntR family transcriptional regulator compare
PS417_18590 -1.1 -2.7 SAM-dependent methyltransferase compare
PS417_02555 -1.1 -9.0 exoribonuclease R compare
PS417_23775 -1.1 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_05570 -1.1 -4.0 DeoR faimly transcriptional regulator compare
PS417_13800 -1.1 -2.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_05455 -1.0 -4.3 XRE family transcriptional regulator compare
PS417_04365 -1.0 -1.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_16990 -1.0 -4.9 acyl-CoA dehydrogenase compare
PS417_06200 -1.0 -4.2 protein-PII uridylyltransferase compare
PS417_27875 -1.0 -6.6 histidine kinase compare
PS417_21655 -1.0 -1.7 aspartate kinase compare
PS417_26040 -1.0 -3.1 malate synthase compare
PS417_06645 -0.9 -5.5 RNA polymerase-associated protein RapA compare
PS417_16855 -0.9 -1.5 cation:proton antiporter compare
PS417_10995 -0.9 -3.0 GntR family transcriptional regulator compare
PS417_08045 -0.9 -1.0 uracil permease compare
PS417_08430 -0.9 -4.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_25985 -0.9 -2.3 dethiobiotin synthetase compare
PS417_05975 -0.9 -1.1 chemotaxis protein CheW compare
PS417_20610 -0.9 -1.5 hypothetical protein compare
PS417_26005 -0.9 -5.9 biotin synthase compare
PS417_06680 -0.8 -6.4 nuclease PIN compare
PS417_08580 -0.8 -4.0 histidine kinase compare
PS417_05695 -0.8 -2.7 transcriptional regulator compare
PS417_01290 -0.8 -1.8 ADP-ribose diphosphatase compare
PS417_12175 -0.8 -2.1 peptide ABC transporter permease compare
PS417_00390 -0.8 -3.4 ABC transporter substrate-binding protein compare
PS417_23900 -0.8 -5.6 poly(A) polymerase compare
PS417_10220 -0.7 -3.3 hypothetical protein compare
PS417_22445 -0.7 -2.7 ATP-dependent DNA helicase RuvB compare
PS417_03740 -0.7 -2.7 peptidylprolyl isomerase compare
PS417_03260 -0.7 -1.8 5S ribosomal RNA compare
PS417_21360 -0.7 -1.2 termination factor Rho compare
PS417_28070 -0.7 -4.3 phosphate ABC transporter ATP-binding protein compare
PS417_21000 -0.7 -2.2 CrfX protein compare
PS417_13075 -0.7 -1.2 hypothetical protein compare
PS417_28080 -0.7 -5.5 phosphate ABC transporter permease compare
PS417_11945 -0.7 -1.5 hypothetical protein compare
PS417_17240 -0.7 -2.5 trigger factor compare
PS417_08730 -0.7 -1.3 cytochrome C compare
PS417_06620 -0.7 -1.4 hypothetical protein compare
PS417_05840 -0.7 -2.9 LuxR family transcriptional regulator compare
PS417_04380 -0.7 -1.5 ABC transporter permease compare
PS417_07560 -0.7 -1.6 universal stress protein UspA compare
PS417_13990 -0.7 -2.0 LysR family transcriptional regulator compare
PS417_19505 -0.7 -2.3 2,4-diaminobutyrate 4-aminotransferase compare
PS417_21695 -0.7 -2.1 succinylglutamate-semialdehyde dehydrogenase compare
PS417_24785 -0.7 -1.5 nucleoside-diphosphate sugar epimerase compare
PS417_17610 -0.7 -1.0 AsnC family transcriptional regulator compare
PS417_11845 -0.7 -3.3 RpiR family transcriptional regulator compare
PS417_05850 -0.6 -3.1 LysR family transcriptional regulator compare
PS417_14515 -0.6 -1.6 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_05010 -0.6 -2.1 IclR family transcriptional regulator compare
PS417_27035 -0.6 -2.5 FAD-linked oxidase compare
PS417_21725 -0.6 -2.0 amino acid transporter compare
PS417_19335 -0.6 -1.8 isochorismatase compare
PS417_20340 -0.6 -1.1 hypothetical protein compare
PS417_17735 -0.6 -1.1 LacI family transcriptional regulator compare
PS417_00570 -0.6 -2.7 NADP transhydrogenase subunit alpha compare
PS417_03310 -0.6 -2.6 carbonate dehydratase compare
PS417_10060 -0.6 -1.1 hypothetical protein compare
PS417_25990 -0.6 -3.7 malonyl-CoA O-methyltransferase compare
PS417_00220 -0.6 -1.7 hypothetical protein compare
PS417_02485 -0.6 -3.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23455 -0.6 -2.3 LrgA compare
PS417_12355 -0.6 -1.7 magnesium chelatase compare
PS417_12505 -0.6 -3.1 peptidase compare
PS417_07175 -0.6 -1.5 beta-lactamase compare
PS417_12110 -0.6 -1.6 ATP-binding protein compare
PS417_27865 -0.6 -2.8 LysR family transcriptional regulator compare
PS417_14015 -0.6 -2.6 LysR family transcriptional regulator compare
PS417_15650 -0.6 -1.5 glutamine amidotransferase compare
PS417_27535 -0.6 -3.7 chemotaxis protein CheY compare
PS417_17490 -0.6 -1.6 ABC transporter ATP-binding protein compare
PS417_07400 -0.6 -1.5 hypothetical protein compare
PS417_27585 -0.6 -1.9 diaminopimelate epimerase compare
PS417_10320 -0.5 -1.7 hypothetical protein compare
PS417_20520 -0.5 -1.6 3-phosphoglycerate kinase compare
PS417_15770 -0.5 -1.1 pyridoxine 5'-phosphate oxidase compare
PS417_06355 -0.5 -1.7 protein-L-isoaspartate O-methyltransferase compare
PS417_00945 -0.5 -3.3 sulfate ABC transporter ATP-binding protein compare
PS417_14245 -0.5 -1.7 hypothetical protein compare
PS417_10810 -0.5 -1.3 hypothetical protein compare
PS417_08945 -0.5 -4.1 heat shock protein 90 compare
PS417_18420 -0.5 -1.6 deoxyribonuclease compare
PS417_26645 -0.5 -1.6 chemotaxis protein compare
PS417_11705 -0.5 -3.9 cyclic peptide transporter compare
PS417_27870 -0.5 -1.9 ATP-dependent DNA helicase RecG compare
PS417_07885 -0.5 -2.4 hypothetical protein compare
PS417_00295 -0.5 -3.5 hypothetical protein compare
PS417_26255 -0.5 -2.5 hypothetical protein compare
PS417_23250 -0.5 -3.4 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_17645 -0.5 -1.2 RND transporter compare
PS417_08135 -0.5 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26725 -0.5 -2.1 hypothetical protein compare
PS417_26815 -0.5 -1.2 peptidase M16 compare
PS417_21285 -0.5 -2.8 hypothetical protein compare
PS417_13870 -0.5 -0.8 hypothetical protein compare
PS417_23450 -0.5 -2.7 membrane protein compare
PS417_04500 -0.5 -0.9 hypothetical protein compare
PS417_11885 -0.5 -1.9 Inositol transport system sugar-binding protein (from data) compare
PS417_02370 -0.5 -1.4 ADP-ribose pyrophosphatase compare
PS417_10040 -0.5 -0.7 MFS transporter compare
PS417_16875 -0.5 -2.5 signal peptidase compare
PS417_12840 -0.5 -2.4 TetR family transcriptional regulator compare
PS417_07190 -0.5 -2.9 MFS transporter compare
PS417_20645 -0.5 -4.0 membrane protein compare
PS417_28280 -0.5 -1.7 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium D-Lactate in Pseudomonas simiae WCS417

For carbon source Sodium D-Lactate across organisms