Experiment set1IT035 for Rhizobium sp. OAE497

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS09095 -5.6 -3.9 PAS domain-containing sensor histidine kinase compare
ABIE40_RS06555 -5.5 -3.2 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS18920 -5.4 -6.7 glutamate 5-kinase compare
ABIE40_RS09545 -5.3 -3.5 anthranilate phosphoribosyltransferase compare
ABIE40_RS03665 -5.1 -3.5 ATP phosphoribosyltransferase compare
ABIE40_RS01970 -5.1 -3.5 acetylglutamate kinase compare
ABIE40_RS20790 -5.1 -7.8 type II toxin-antitoxin system HicB family antitoxin compare
ABIE40_RS10785 -5.0 -3.8 acyl-CoA thioesterase compare
ABIE40_RS19435 -5.0 -2.8 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS02725 -4.9 -4.8 histidinol dehydrogenase compare
ABIE40_RS17530 -4.9 -6.8 diaminopimelate decarboxylase compare
ABIE40_RS20765 -4.8 -3.6 crotonase/enoyl-CoA hydratase family protein compare
ABIE40_RS06930 -4.6 -3.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS19330 -4.6 -3.2 phosphoribosylanthranilate isomerase compare
ABIE40_RS16320 -4.6 -7.0 histidinol-phosphatase compare
ABIE40_RS03660 -4.5 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS17525 -4.5 -2.5 lipoprotein compare
ABIE40_RS02325 -4.4 -5.2 ornithine carbamoyltransferase compare
ABIE40_RS12860 -4.4 -1.5 Lrp/AsnC family transcriptional regulator compare
ABIE40_RS11495 -4.4 -3.0 acetolactate synthase 3 large subunit compare
ABIE40_RS19440 -4.4 -4.3 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS09660 -4.4 -14.9 AI-2E family transporter compare
ABIE40_RS10180 -4.3 -4.2 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS17595 -4.3 -3.0 histidinol-phosphate transaminase compare
ABIE40_RS00930 -4.3 -5.1 ABC transporter permease compare
ABIE40_RS19450 -4.3 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS09360 -4.3 -4.1 excinuclease ABC subunit UvrA compare
ABIE40_RS00725 -4.2 -2.9 DNA cytosine methyltransferase compare
ABIE40_RS06050 -4.1 -4.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS27295 -4.1 -2.4 hypothetical protein compare
ABIE40_RS20775 -4.1 -8.7 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
ABIE40_RS19355 -4.1 -2.9 thioredoxin compare
ABIE40_RS19490 -4.0 -14.3 malate synthase G compare
ABIE40_RS20770 -4.0 -9.1 hydroxymethylglutaryl-CoA lyase compare
ABIE40_RS04320 -4.0 -19.0 pyruvate, phosphate dikinase compare
ABIE40_RS08635 -4.0 -13.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS03255 -3.9 -16.3 isocitrate lyase compare
ABIE40_RS02730 -3.9 -9.5 UPF0262 family protein compare
ABIE40_RS09725 -3.9 -4.6 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS08005 -3.8 -2.6 dihydroxy-acid dehydratase compare
ABIE40_RS03405 -3.8 -2.6 anti-sigma factor compare
ABIE40_RS20795 -3.8 -15.4 isovaleryl-CoA dehydrogenase compare
ABIE40_RS03250 -3.8 -1.7 hypothetical protein compare
ABIE40_RS10345 -3.7 -6.1 RNA polymerase-binding protein DksA compare
ABIE40_RS20800 -3.7 -19.4 indolepyruvate ferredoxin oxidoreductase family protein conserved
ABIE40_RS09170 -3.7 -5.0 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS19460 -3.7 -7.8 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS13410 -3.6 -7.0 anthranilate synthase compare
ABIE40_RS00935 -3.6 -5.0 ABC transporter substrate-binding protein compare
ABIE40_RS19130 -3.6 -4.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS16170 -3.6 -3.5 DUF882 domain-containing protein compare
ABIE40_RS03260 -3.6 -8.1 short-chain fatty acyl-CoA regulator family protein compare
ABIE40_RS20780 -3.6 -16.7 carboxyl transferase domain-containing protein compare
ABIE40_RS05430 -3.5 -2.4 phosphoribosylamine--glycine ligase compare
ABIE40_RS17590 -3.4 -2.3 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS19365 -3.4 -2.3 double-strand break repair protein AddB compare
ABIE40_RS06270 -3.3 -8.5 amidophosphoribosyltransferase compare
ABIE40_RS10155 -3.3 -2.1 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS04060 -3.3 -13.6 cytochrome c oxidase subunit II compare
ABIE40_RS19480 -3.2 -3.1 DUF1402 family protein compare
ABIE40_RS08140 -3.2 -14.8 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS24310 -3.1 -8.8 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS18055 -3.1 -4.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS04070 -3.1 -6.8 heme o synthase compare
ABIE40_RS10200 -3.1 -2.1 Grx4 family monothiol glutaredoxin compare
ABIE40_RS18290 -3.1 -12.5 heme ABC transporter permease compare
ABIE40_RS18690 -3.1 -8.5 acetyl-CoA C-acetyltransferase compare
ABIE40_RS14955 -3.1 -9.2 sugar transferase compare
ABIE40_RS05690 -3.0 -5.3 cytochrome c-type biogenesis protein compare
ABIE40_RS19445 -3.0 -3.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS20785 -3.0 -7.0 type II toxin-antitoxin system HicA family toxin compare
ABIE40_RS11175 -3.0 -7.0 cobyric acid synthase compare
ABIE40_RS13125 -3.0 -12.8 cytochrome b N-terminal domain-containing protein compare
ABIE40_RS17515 -2.9 -6.4 TlpA disulfide reductase family protein compare
ABIE40_RS00490 -2.9 -10.9 DNA polymerase I compare
ABIE40_RS06560 -2.9 -5.8 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS18925 -2.9 -7.1 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS00580 -2.9 -3.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS05685 -2.8 -11.4 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS18880 -2.8 -11.3 UDP-glucose 4-epimerase GalE compare
ABIE40_RS14985 -2.8 -2.5 glycosyltransferase compare
ABIE40_RS23250 -2.8 -9.8 hypothetical protein compare
ABIE40_RS09320 -2.8 -13.4 extracellular solute-binding protein compare
ABIE40_RS20905 -2.8 -5.4 IclR family transcriptional regulator compare
ABIE40_RS14990 -2.8 -9.9 glycosyltransferase family 2 protein compare
ABIE40_RS16070 -2.7 -4.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS19700 -2.7 -3.2 MBL fold metallo-hydrolase compare
ABIE40_RS00620 -2.7 -9.9 microcin C ABC transporter permease YejB compare
ABIE40_RS00235 -2.7 -5.0 cytochrome c family protein compare
ABIE40_RS11020 -2.7 -10.9 substrate-binding domain-containing protein compare
ABIE40_RS10725 -2.7 -3.8 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS00245 -2.6 -10.2 prephenate dehydratase compare
ABIE40_RS04085 -2.6 -7.7 cytochrome c oxidase subunit 3 compare
ABIE40_RS05660 -2.6 -3.5 response regulator transcription factor compare
ABIE40_RS03290 -2.6 -13.5 acetoacetate--CoA ligase compare
ABIE40_RS08425 -2.6 -3.1 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS06720 -2.6 -2.4 transcriptional regulator NrdR compare
ABIE40_RS04065 -2.5 -10.1 cytochrome c oxidase subunit I compare
ABIE40_RS19415 -2.5 -13.0 phosphoenolpyruvate carboxykinase compare
ABIE40_RS05680 -2.5 -8.0 cytochrome c maturation protein CcmE compare
ABIE40_RS11095 -2.5 -5.2 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS12360 -2.4 -8.9 DUF5131 family protein compare
ABIE40_RS18280 -2.4 -4.3 heme ABC exporter ATP-binding protein CcmA compare
ABIE40_RS16645 -2.4 -13.3 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS18775 -2.4 -14.0 pyruvate carboxylase compare
ABIE40_RS13120 -2.4 -6.7 cytochrome c1 compare
ABIE40_RS03515 -2.4 -2.3 glutamate--cysteine ligase compare
ABIE40_RS10720 -2.4 -2.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS08935 -2.4 -3.0 RIP metalloprotease RseP compare
ABIE40_RS06730 -2.3 -5.2 riboflavin synthase compare
ABIE40_RS13130 -2.3 -7.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE40_RS00630 -2.3 -8.5 ABC transporter ATP-binding protein compare
ABIE40_RS06725 -2.3 -5.5 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS01930 -2.3 -2.0 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS06915 -2.2 -10.0 COX15/CtaA family protein compare
ABIE40_RS20445 -2.2 -1.4 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS00625 -2.2 -7.9 ABC transporter permease compare
ABIE40_RS17650 -2.2 -5.0 cobaltochelatase subunit CobS compare
ABIE40_RS22100 -2.2 -1.4 helix-turn-helix domain-containing protein compare
ABIE40_RS20435 -2.1 -2.9 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS00925 -2.1 -4.4 ABC transporter permease compare
ABIE40_RS30700 -2.1 -1.2 hypothetical protein compare
ABIE40_RS18300 -2.1 -6.9 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS18285 -2.0 -5.5 heme exporter protein CcmB compare
ABIE40_RS24690 -2.0 -2.7 transcriptional regulator NanR compare
ABIE40_RS09090 -2.0 -6.2 nitrogen regulation protein NR(I) compare
ABIE40_RS24490 -2.0 -1.4 flavin reductase compare
ABIE40_RS13370 -2.0 -8.2 CDF family cation efflux transporter EmfA compare
ABIE40_RS01405 -2.0 -6.5 glutathione synthase compare
ABIE40_RS18975 -1.9 -8.2 S41 family peptidase compare
ABIE40_RS01135 -1.9 -0.9 50S ribosomal protein L20 compare
ABIE40_RS04080 -1.9 -7.4 cytochrome c oxidase assembly protein compare
ABIE40_RS19395 -1.9 -2.2 PTS sugar transporter subunit IIA compare
ABIE40_RS20455 -1.9 -1.9 precorrin-8X methylmutase compare
ABIE40_RS10850 -1.9 -5.3 excinuclease ABC subunit UvrB compare
ABIE40_RS01765 -1.9 -4.3 [protein-PII] uridylyltransferase compare
ABIE40_RS14980 -1.9 -3.8 glycoside hydrolase family 16 protein compare
ABIE40_RS10390 -1.9 -2.1 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS11960 -1.9 -2.1 energy-dependent translational throttle protein EttA compare
ABIE40_RS10590 -1.8 -2.0 hypothetical protein compare
ABIE40_RS11105 -1.8 -6.7 cobyrinate a,c-diamide synthase compare
ABIE40_RS14855 -1.8 -5.9 NAD-dependent epimerase compare
ABIE40_RS18640 -1.8 -7.1 M48 family metalloprotease compare
ABIE40_RS03815 -1.8 -2.1 DUF6101 family protein compare
ABIE40_RS20465 -1.8 -4.1 precorrin-6A synthase (deacetylating) compare
ABIE40_RS19615 -1.8 -2.0 DUF1109 domain-containing protein compare
ABIE40_RS12135 -1.7 -5.1 methionine synthase compare
ABIE40_RS06700 -1.7 -4.0 MarR family winged helix-turn-helix transcriptional regulator compare
ABIE40_RS23455 -1.7 -4.4 GntR family transcriptional regulator compare
ABIE40_RS03685 -1.7 -1.8 hypothetical protein compare
ABIE40_RS18255 -1.7 -1.7 hypothetical protein compare
ABIE40_RS08865 -1.7 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE40_RS02320 -1.6 -4.0 aspartate aminotransferase family protein compare
ABIE40_RS29160 -1.6 -1.3 hypothetical protein compare
ABIE40_RS14455 -1.6 -2.0 NepR family anti-sigma factor compare
ABIE40_RS19360 -1.6 -3.8 double-strand break repair helicase AddA compare
ABIE40_RS05710 -1.6 -10.9 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase compare
ABIE40_RS07270 -1.6 -5.1 DUF1467 family protein compare
ABIE40_RS05365 -1.6 -5.1 tetratricopeptide repeat protein compare
ABIE40_RS18685 -1.6 -3.6 beta-ketoacyl-ACP reductase compare
ABIE40_RS12925 -1.6 -7.2 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS19260 -1.6 -2.5 DNA polymerase III subunit epsilon compare
ABIE40_RS16655 -1.6 -4.2 creatininase family protein compare
ABIE40_RS26440 -1.6 -1.7 Ku protein compare
ABIE40_RS27930 -1.6 -1.2 nuclear transport factor 2 family protein compare
ABIE40_RS11165 -1.5 -1.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS02305 -1.5 -3.2 phosphate signaling complex protein PhoU compare
ABIE40_RS18770 -1.5 -1.4 amino acid ABC transporter ATP-binding protein compare
ABIE40_RS11995 -1.5 -1.3 TIGR01244 family sulfur transferase compare
ABIE40_RS20450 -1.5 -2.9 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS11155 -1.4 -6.4 cobaltochelatase subunit CobN compare
ABIE40_RS09540 -1.4 -4.2 peptidylprolyl isomerase compare
ABIE40_RS04075 -1.4 -2.3 hypothetical protein compare
ABIE40_RS13905 -1.4 -1.9 4-hydroxy-tetrahydrodipicolinate reductase compare
ABIE40_RS25665 -1.4 -2.0 DUF2160 domain-containing protein compare
ABIE40_RS11490 -1.4 -6.9 acetolactate synthase small subunit compare
ABIE40_RS10140 -1.4 -2.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS14135 -1.4 -2.6 TetR/AcrR family transcriptional regulator compare
ABIE40_RS17010 -1.4 -5.8 sugar ABC transporter permease compare
ABIE40_RS27100 -1.4 -0.9 type II toxin-antitoxin system VapC family toxin compare
ABIE40_RS27255 -1.4 -1.4 hypothetical protein compare
ABIE40_RS14220 -1.3 -1.4 efflux transporter outer membrane subunit compare
ABIE40_RS05670 -1.3 -3.3 membrane protein compare
ABIE40_RS14395 -1.3 -1.7 hypothetical protein compare
ABIE40_RS09155 -1.3 -4.0 DUF934 domain-containing protein compare
ABIE40_RS11085 -1.3 -1.6 acyl carrier protein compare
ABIE40_RS27640 -1.3 -3.3 hypothetical protein compare
ABIE40_RS30025 -1.3 -1.8 TIGR04076 family protein compare
ABIE40_RS09150 -1.3 -7.9 nitrite/sulfite reductase compare
ABIE40_RS26865 -1.3 -1.0 hypothetical protein compare
ABIE40_RS19805 -1.2 -1.7 hypothetical protein compare
ABIE40_RS22300 -1.2 -4.1 superoxide dismutase compare
ABIE40_RS10425 -1.2 -4.1 ABC transporter ATP-binding protein compare
ABIE40_RS26025 -1.2 -1.9 hypothetical protein compare
ABIE40_RS02075 -1.2 -5.8 ROK family transcriptional regulator compare
ABIE40_RS18720 -1.2 -1.1 polyprenyl synthetase family protein compare
ABIE40_RS19120 -1.2 -10.2 NAD-glutamate dehydrogenase compare
ABIE40_RS09720 -1.2 -2.5 GTP cyclohydrolase I FolE compare
ABIE40_RS06710 -1.2 -1.8 L,D-transpeptidase family protein compare
ABIE40_RS05995 -1.2 -6.7 MurR/RpiR family transcriptional regulator compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Sodium pyruvate in Rhizobium sp. OAE497

For carbon source Sodium pyruvate across organisms