Experiment set1IT035 for Enterobacter asburiae PDN3

Compare to:

MS_media with Sodium arsenate dibasic heptahydrate 5 mM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4341 -6.8 -3.2 Protein-disulfide isomerase compare
EX28DRAFT_2252 -5.3 -1.8 TolA protein compare
EX28DRAFT_2531 -4.3 -5.9 endopeptidase La compare
EX28DRAFT_1123 -4.0 -9.7 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_1122 -4.0 -9.0 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_4061 -3.8 -8.7 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_4153 -3.8 -2.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_4123 -3.8 -4.0 transcriptional regulator, DeoR family compare
EX28DRAFT_2851 -3.8 -2.5 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_2585 -3.8 -1.9 pyrroline-5-carboxylate reductase compare
EX28DRAFT_3401 -3.7 -1.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_4155 -3.6 -4.1 DNA adenine methylase (dam) compare
EX28DRAFT_2774 -3.5 -7.2 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_2985 -3.5 -9.7 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_2916 -3.5 -8.8 diaminopimelate decarboxylase compare
EX28DRAFT_2650 -3.5 -5.8 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_4015 -3.3 -3.3 F0F1-type ATP synthase, subunit I compare
EX28DRAFT_2117 -3.3 -12.0 arsenite/antimonite efflux pump membrane protein compare
EX28DRAFT_2635 -3.3 -7.6 Fructose-2,6-bisphosphatase compare
EX28DRAFT_4422 -3.3 -5.2 argininosuccinate lyase compare
EX28DRAFT_4386 -3.2 -1.8 Signal transduction histidine kinase compare
EX28DRAFT_4271 -3.2 -1.0 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_4418 -3.1 -6.0 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_3898 -3.1 -2.1 DNA-directed RNA polymerase subunit omega (EC 2.7.7.6) compare
EX28DRAFT_1124 -3.1 -11.1 sucrose-6-phosphate hydrolase compare
EX28DRAFT_1986 -3.1 -1.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_4421 -3.1 -0.7 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_0111 -3.0 -2.0 FeS cluster assembly scaffold IscU compare
EX28DRAFT_2118 -3.0 -2.6 arsenate reductase (glutaredoxin) compare
EX28DRAFT_3614 -2.8 -7.1 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_2651 -2.8 -4.7 glutamate 5-kinase compare
EX28DRAFT_0286 -2.7 -1.9 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_2701 -2.7 -5.7 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2548 -2.6 -2.5 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_4419 -2.6 -1.9 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_3376 -2.6 -7.5 ribonuclease R compare
EX28DRAFT_4383 -2.6 -10.3 transcriptional regulator, XRE family with cupin sensor compare
EX28DRAFT_3645 -2.6 -4.8 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_0228 -2.6 -1.6 tRNA compare
EX28DRAFT_0046 -2.5 -1.9 shikimate dehydrogenase compare
EX28DRAFT_2917 -2.5 -3.2 Transcriptional regulator compare
EX28DRAFT_0972 -2.4 -2.1 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_0108 -2.4 -1.3 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_3087 -2.4 -7.2 acyl-phosphate glycerol 3-phosphate acyltransferase compare
EX28DRAFT_3675 -2.3 -8.2 transcriptional regulator, LacI family compare
EX28DRAFT_0534 -2.3 -3.8 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_0073 -2.2 -1.2 Negative regulator of sigma E activity compare
EX28DRAFT_2265 -2.2 -0.7 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_4493 -2.2 -2.8 Transcriptional regulator compare
EX28DRAFT_2846 -2.2 -4.3 adenylyl-sulfate kinase compare
EX28DRAFT_0166 -2.1 -7.6 polyphosphate kinase 1 compare
EX28DRAFT_4121 -2.1 -2.6 Rhodanese-related sulfurtransferase compare
EX28DRAFT_4170 -2.1 -6.2 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_0330 -2.1 -3.0 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0533 -2.0 -3.6 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0329 -2.0 -4.9 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0331 -1.9 -2.3 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_4420 -1.9 -0.6 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_4120 -1.9 -4.6 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_4507 -1.9 -6.0 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_2945 -1.9 -1.8 tyrosine recombinase XerD compare
EX28DRAFT_3224 -1.9 -3.3 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_4300 -1.9 -1.8 Predicted membrane protein compare
EX28DRAFT_0593 -1.9 -10.7 DNA-methyltransferase (dcm) compare
EX28DRAFT_3070 -1.8 -1.4 Predicted phosphohydrolases compare
EX28DRAFT_3368 -1.8 -1.1 tRNA dimethylallyltransferase compare
EX28DRAFT_2893 -1.8 -3.6 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_1374 -1.8 -1.2 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_3613 -1.8 -5.8 RNA compare
EX28DRAFT_2313 -1.7 -2.0 Putative Mg2+ and Co2+ transporter CorC compare
EX28DRAFT_4296 -1.7 -4.5 putative protein insertion permease FtsX compare
EX28DRAFT_2852 -1.7 -5.8 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_0541 -1.7 -1.4 RNA compare
EX28DRAFT_2050 -1.7 -7.7 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_0322 -1.7 -5.5 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_1626 -1.7 -1.8 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_2682 -1.7 -8.3 hydroxyacylglutathione hydrolase compare
EX28DRAFT_2027 -1.6 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_2853 -1.6 -3.9 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_0327 -1.6 -4.9 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_2864 -1.6 -5.6 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_2043 -1.6 -5.6 transcriptional regulator, AsnC family compare
EX28DRAFT_2169 -1.6 -5.3 iron (metal) dependent repressor, DtxR family compare
EX28DRAFT_2702 -1.6 -5.3 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0540 -1.6 -4.8 ATP phosphoribosyltransferase compare
EX28DRAFT_0334 -1.6 -1.8 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0970 -1.5 -4.0 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_0333 -1.5 -5.1 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_2654 -1.5 -5.8 Alpha/beta hydrolase of unknown function (DUF1100) compare
EX28DRAFT_3081 -1.5 -10.4 Glutamine synthetase adenylyltransferase compare
EX28DRAFT_0738 -1.5 -2.3 Predicted membrane protein compare
EX28DRAFT_0538 -1.5 -4.5 histidinol-phosphate aminotransferase compare
EX28DRAFT_3297 -1.5 -4.7 ribonuclease, Rne/Rng family compare
EX28DRAFT_4397 -1.5 -4.2 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
EX28DRAFT_0076 -1.5 -2.9 elongation factor 4 compare
EX28DRAFT_2958 -1.5 -1.5 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_4158 -1.5 -2.5 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_4436 -1.4 -4.4 Transcriptional regulator compare
EX28DRAFT_3616 -1.4 -1.8 threonine synthase compare
EX28DRAFT_0778 -1.4 -0.9 hypothetical protein compare
EX28DRAFT_0272 -1.4 -1.2 phosphohistidine phosphatase, SixA compare
EX28DRAFT_4406 -1.4 -3.7 cell division protein FtsN compare
EX28DRAFT_0934 -1.3 -6.1 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_2904 -1.3 -8.6 phosphoenolpyruvate-protein phosphotransferase compare
EX28DRAFT_0323 -1.3 -3.4 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_2497 -1.3 -3.7 Biofilm formation regulator YbaJ compare
EX28DRAFT_1650 -1.3 -1.7 ribonuclease T compare
EX28DRAFT_2272 -1.3 -4.1 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_2532 -1.3 -1.2 RNA compare
EX28DRAFT_4437 -1.3 -3.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2837 -1.3 -5.4 RNA polymerase, sigma 38 subunit, RpoS compare
EX28DRAFT_4156 -1.3 -1.4 ribulose-phosphate 3-epimerase compare
EX28DRAFT_1542 -1.3 -6.1 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_0332 -1.3 -4.9 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_2721 -1.2 -2.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1649 -1.2 -4.8 lactoylglutathione lyase compare
EX28DRAFT_1684 -1.2 -4.3 FeS assembly protein SufD compare
EX28DRAFT_2999 -1.2 -1.9 Fe-S cluster protector protein compare
EX28DRAFT_3073 -1.2 -4.4 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_1310 -1.2 -1.6 phage replication protein P compare
EX28DRAFT_3314 -1.2 -0.9 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_0539 -1.2 -3.4 histidinol dehydrogenase compare
EX28DRAFT_0764 -1.2 -2.5 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_0167 -1.2 -1.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_0074 -1.2 -5.6 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_0523 -1.2 -0.8 Glycosyltransferase like family 2 compare
EX28DRAFT_4191 -1.2 -2.8 small GTP-binding protein domain compare
EX28DRAFT_1493 -1.2 -3.1 Transcriptional regulator/sugar kinase compare
EX28DRAFT_0001 -1.2 -2.2 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_0325 -1.1 -3.6 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_1402 -1.1 -2.0 Glyoxalase-like domain compare
EX28DRAFT_2847 -1.1 -5.7 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_0535 -1.1 -2.2 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_0214 -1.1 -2.8 cysteine synthase A compare
EX28DRAFT_4459 -1.1 -3.8 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0936 -1.1 -3.4 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0519 -1.1 -7.6 Predicted nucleoside-diphosphate sugar epimerases compare
EX28DRAFT_2250 -1.1 -1.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0948 -1.1 -1.2 hypothetical protein compare
EX28DRAFT_0170 -1.1 -4.8 uracil phosphoribosyltransferase (EC 2.4.2.9) compare
EX28DRAFT_3245 -1.1 -1.8 Predicted NTP binding protein (contains STAS domain) compare
EX28DRAFT_0324 -1.1 -2.1 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0693 -1.1 -0.7 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_4297 -1.1 -1.2 cell division ATP-binding protein FtsE compare
EX28DRAFT_1988 -1.1 -5.4 Predicted ATP-dependent protease compare
EX28DRAFT_1834 -1.1 -2.8 beta-ketoacyl-acyl-carrier-protein synthase II compare
EX28DRAFT_3278 -1.0 -2.1 Glutathione S-transferase compare
EX28DRAFT_1679 -1.0 -3.2 pyruvate kinase compare
EX28DRAFT_0536 -1.0 -0.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_3058 -1.0 -1.8 Signal transduction histidine kinase compare
EX28DRAFT_0125 -1.0 -0.6 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_4327 -1.0 -1.8 transcriptional regulator, IclR family compare
EX28DRAFT_4065 -1.0 -3.6 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_1398 -1.0 -1.5 hypothetical protein compare
EX28DRAFT_3410 -1.0 -2.0 hypothetical protein compare
EX28DRAFT_0362 -1.0 -4.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
EX28DRAFT_0328 -1.0 -1.2 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_3461 -1.0 -1.7 ornithine carbamoyltransferase compare
EX28DRAFT_2424 -1.0 -2.6 transcriptional regulator, TetR family compare
EX28DRAFT_1740 -1.0 -0.7 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_1590 -1.0 -1.1 hypothetical protein compare
EX28DRAFT_2240 -1.0 -1.7 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_2211 -1.0 -6.2 Excinuclease ABC subunit B compare
EX28DRAFT_4152 -1.0 -1.0 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_2699 -1.0 -1.8 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0932 -1.0 -2.0 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_3248 -1.0 -4.1 ABC transport permease subunit compare
EX28DRAFT_1692 -1.0 -0.9 Biofilm development protein YmgB/AriR compare
EX28DRAFT_1839 -1.0 -3.8 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_1623 -0.9 -2.0 electron transport complex, RnfABCDGE type, A subunit compare
EX28DRAFT_2440 -0.9 -2.4 FOG: EAL domain compare
EX28DRAFT_2056 -0.9 -4.0 Predicted ATP-dependent endonuclease of the OLD family compare
EX28DRAFT_0517 -0.9 -3.6 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
EX28DRAFT_4446 -0.9 -4.3 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_1128 -0.9 -1.2 hypothetical protein compare
EX28DRAFT_2848 -0.9 -5.1 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_2724 -0.9 -0.9 RNA compare
EX28DRAFT_2216 -0.9 -3.3 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_2288 -0.9 -1.3 negative regulator of replication initiation SeqA compare
EX28DRAFT_1500 -0.9 -1.7 Predicted transcriptional regulators compare
EX28DRAFT_0321 -0.9 -0.6 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_2753 -0.9 -1.5 Rhodanese-related sulfurtransferase compare
EX28DRAFT_4018 -0.9 -1.3 Flavodoxins compare
EX28DRAFT_1636 -0.9 -3.4 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
EX28DRAFT_1871 -0.9 -4.6 BssS protein family compare
EX28DRAFT_4246 -0.9 -6.7 excinuclease ABC, A subunit compare
EX28DRAFT_0075 -0.9 -3.1 positive regulator of sigma(E), RseC/MucC compare
EX28DRAFT_3253 -0.9 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1134 -0.9 -1.4 Protein-disulfide isomerase compare
EX28DRAFT_1919 -0.9 -1.9 pyrimidine utilization flavin reductase protein F compare
EX28DRAFT_0529 -0.9 -2.2 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_0065 -0.9 -0.7 thioredoxin compare
EX28DRAFT_1281 -0.9 -2.4 hypothetical protein compare
EX28DRAFT_1376 -0.9 -1.1 hypothetical protein compare
EX28DRAFT_0305 -0.9 -3.2 Isopentenyldiphosphate isomerase compare
EX28DRAFT_4452 -0.9 -1.4 thioredoxin compare
EX28DRAFT_4157 -0.9 -3.7 2-phosphoglycolate phosphatase, prokaryotic compare
EX28DRAFT_2775 -0.8 -3.0 Predicted membrane protein compare
EX28DRAFT_2132 -0.8 -2.1 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components compare
EX28DRAFT_2964 -0.8 -1.7 5,10-methenyltetrahydrofolate synthetase compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress Sodium arsenate dibasic heptahydrate across organisms