Experiment set1IT034 for Pseudomonas simiae WCS417

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -5.3 -5.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_01575 -4.7 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27795 -4.4 -1.8 orotate phosphoribosyltransferase compare
PS417_04420 -4.1 -12.3 histidinol dehydrogenase compare
PS417_18585 -4.1 -7.7 3-isopropylmalate dehydrogenase compare
PS417_18560 -4.0 -15.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_04415 -3.9 -11.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01850 -3.9 -7.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25720 -3.8 -9.7 anthranilate synthase component II compare
PS417_27040 -3.8 -5.7 3-phosphoglycerate dehydrogenase compare
PS417_23800 -3.7 -13.9 ketol-acid reductoisomerase compare
PS417_25725 -3.6 -18.9 anthranilate synthase component I compare
PS417_18595 -3.6 -5.4 3-isopropylmalate dehydratase compare
PS417_02510 -3.6 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27835 -3.6 -9.2 endoribonuclease compare
PS417_20985 -3.6 -4.8 porin compare
PS417_25715 -3.6 -7.9 anthranilate phosphoribosyltransferase compare
PS417_08125 -3.5 -2.0 prephenate dehydratase compare
PS417_23810 -3.5 -15.1 acetolactate synthase 3 catalytic subunit compare
PS417_26740 -3.5 -11.5 homoserine acetyltransferase compare
PS417_18600 -3.3 -4.2 isopropylmalate isomerase compare
PS417_01565 -3.2 -4.7 imidazole glycerol phosphate synthase compare
PS417_01605 -3.1 -3.0 phosphoglycerate mutase compare
PS417_26890 -2.9 -7.0 dihydroxy-acid dehydratase compare
PS417_05595 -2.9 -8.2 ornithine carbamoyltransferase compare
PS417_24745 -2.9 -6.9 gamma-glutamyl phosphate reductase compare
PS417_26745 -2.8 -6.6 methionine biosynthesis protein MetW compare
PS417_05090 -2.8 -12.0 ferric citrate outer membrane transporter (fecA) (from data) conserved
PS417_18530 -2.7 -6.7 O-succinylhomoserine sulfhydrylase compare
PS417_16465 -2.7 -12.8 sirohydrochlorin ferrochelatase compare
PS417_21510 -2.7 -3.1 histidine kinase compare
PS417_27195 -2.6 -2.1 N-acetylglutamate synthase compare
PS417_00185 -2.6 -5.7 tryptophan synthase subunit beta compare
PS417_12290 -2.4 -8.3 sulfite reductase compare
PS417_00180 -2.4 -4.3 tryptophan synthase subunit alpha compare
PS417_05100 -2.4 -3.0 RNA polymerase sigma factor compare
PS417_02005 -2.2 -12.0 glutamate synthase compare
PS417_25710 -2.2 -1.6 indole-3-glycerol-phosphate synthase compare
PS417_01560 -2.1 -3.7 imidazoleglycerol-phosphate dehydratase compare
PS417_24835 -2.1 -6.9 hypothetical protein compare
PS417_24155 -2.1 -2.4 ATP-binding protein compare
PS417_26730 -2.1 -1.8 pyrroline-5-carboxylate reductase compare
PS417_23995 -2.0 -1.4 preprotein translocase subunit SecG compare
PS417_01580 -2.0 -1.9 imidazole glycerol phosphate synthase compare
PS417_23110 -1.9 -5.0 2-isopropylmalate synthase compare
PS417_09325 -1.9 -6.5 peptidase S41 compare
PS417_02000 -1.9 -12.4 glutamate synthase compare
PS417_23770 -1.8 -2.9 exodeoxyribonuclease V subunit alpha compare
PS417_21705 -1.7 -6.4 arginine N-succinyltransferase compare
PS417_13800 -1.7 -3.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_08245 -1.7 -1.6 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_24585 -1.5 -10.1 AMP nucleosidase compare
PS417_05975 -1.5 -1.3 chemotaxis protein CheW compare
PS417_08225 -1.5 -3.7 acetolactate synthase compare
PS417_02415 -1.4 -5.0 phosphoserine phosphatase compare
PS417_21515 -1.4 -8.5 transcriptional regulator compare
PS417_06245 -1.4 -3.0 zinc metallopeptidase RseP compare
PS417_20160 -1.4 -3.5 cysteine synthase compare
PS417_20125 -1.4 -4.0 phosphoribosylglycinamide formyltransferase compare
PS417_05505 -1.4 -8.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_13375 -1.4 -7.6 LysR family transcriptional regulator compare
PS417_22670 -1.4 -6.8 AraC family transcriptional regulator compare
PS417_15285 -1.3 -1.6 type VI secretion protein compare
PS417_23545 -1.3 -1.9 gamma-glutamyl kinase compare
PS417_17795 -1.3 -2.3 ABC transporter permease compare
PS417_10645 -1.3 -9.5 magnesium ABC transporter ATPase compare
PS417_01570 -1.3 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_22520 -1.3 -1.5 histidine kinase compare
PS417_26605 -1.3 -1.2 malonate decarboxylase subunit beta compare
PS417_08220 -1.3 -0.9 epimerase compare
PS417_20610 -1.2 -1.8 hypothetical protein compare
PS417_20620 -1.2 -5.3 glycosyl transferase family 2 compare
PS417_27245 -1.2 -4.8 aminotransferase DegT compare
PS417_14200 -1.2 -1.8 hypothetical protein compare
PS417_20665 -1.1 -4.7 hypothetical protein compare
PS417_21700 -1.1 -3.6 arginine N-succinyltransferase compare
PS417_12855 -1.1 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08205 -1.1 -3.8 acetyltransferase compare
PS417_08195 -1.1 -5.6 hypothetical protein compare
PS417_02725 -1.0 -3.4 hypothetical protein compare
PS417_21285 -1.0 -3.4 hypothetical protein compare
PS417_18055 -1.0 -1.7 general secretion pathway protein GspK compare
PS417_23385 -1.0 -5.1 cytochrome o ubiquinol oxidase subunit I compare
PS417_23375 -1.0 -2.3 cytochrome C oxidase compare
PS417_13795 -1.0 -6.1 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_26820 -1.0 -5.5 peptidase M16 compare
PS417_07305 -1.0 -2.5 3-beta hydroxysteroid dehydrogenase compare
PS417_13790 -1.0 -4.5 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_21425 -1.0 -1.9 4-amino-4-deoxychorismate lyase compare
PS417_13305 -1.0 -1.6 hypothetical protein compare
PS417_27875 -1.0 -6.1 histidine kinase compare
PS417_21360 -1.0 -1.3 termination factor Rho compare
PS417_13820 -1.0 -5.2 UDP-glucose 6-dehydrogenase compare
PS417_02555 -0.9 -7.6 exoribonuclease R compare
PS417_04585 -0.9 -1.8 hypothetical protein compare
PS417_08580 -0.9 -4.8 histidine kinase compare
PS417_27585 -0.9 -1.4 diaminopimelate epimerase compare
PS417_05095 -0.9 -2.7 membrane protein compare
PS417_08045 -0.9 -1.5 uracil permease compare
PS417_16490 -0.9 -1.6 cell division protein FtsK compare
PS417_10025 -0.9 -1.5 bacteriophage lambda NinG family protein compare
PS417_27610 -0.9 -3.4 hypothetical protein compare
PS417_26815 -0.9 -1.9 peptidase M16 compare
PS417_05025 -0.9 -1.6 maleylacetoacetate isomerase compare
PS417_23370 -0.9 -2.5 protoheme IX farnesyltransferase compare
PS417_07560 -0.9 -1.4 universal stress protein UspA compare
PS417_26990 -0.9 -1.4 RNA pyrophosphohydrolase compare
PS417_05525 -0.9 -3.7 Fis family transcriptional regulator compare
PS417_08200 -0.9 -2.8 hypothetical protein compare
PS417_04220 -0.9 -1.4 4-carboxymuconolactone decarboxylase compare
PS417_11400 -0.9 -1.5 phosphoglycerate mutase compare
PS417_17925 -0.8 -2.2 acyl-CoA dehydrogenase compare
PS417_21725 -0.8 -2.3 amino acid transporter compare
PS417_19195 -0.8 -2.0 hypothetical protein compare
PS417_04500 -0.8 -1.6 hypothetical protein compare
PS417_23170 -0.8 -1.7 FeS assembly protein IscX compare
PS417_19065 -0.8 -1.2 monooxygenase compare
PS417_07595 -0.8 -3.3 PasA protein compare
PS417_21125 -0.8 -3.9 phosphoadenosine phosphosulfate reductase compare
PS417_28070 -0.8 -4.6 phosphate ABC transporter ATP-binding protein compare
PS417_03160 -0.8 -5.0 metal ABC transporter ATPase compare
PS417_07255 -0.8 -3.4 Deoxyribonolactonase (from data) compare
PS417_10480 -0.8 -1.8 glutathione S-transferase compare
PS417_10870 -0.8 -2.1 GABA permease compare
PS417_28080 -0.8 -6.3 phosphate ABC transporter permease compare
PS417_21690 -0.8 -4.1 N-succinylarginine dihydrolase compare
PS417_27665 -0.8 -3.7 diguanylate cyclase compare
PS417_15650 -0.8 -1.1 glutamine amidotransferase compare
PS417_00510 -0.7 -1.0 membrane protein compare
PS417_14515 -0.7 -1.6 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_01780 -0.7 -2.8 proline iminopeptidase compare
PS417_22385 -0.7 -5.3 quinolinate synthase A compare
PS417_19505 -0.7 -1.7 2,4-diaminobutyrate 4-aminotransferase compare
PS417_01920 -0.7 -0.9 ATP-dependent protease subunit HslV compare
PS417_23205 -0.7 -2.2 transcriptional regulator compare
PS417_07470 -0.7 -1.1 hypothetical protein compare
PS417_12595 -0.7 -1.7 transcriptional regulator compare
PS417_20245 -0.7 -1.8 copper resistance protein CopD compare
PS417_22660 -0.7 -1.6 hypothetical protein compare
PS417_24705 -0.7 -2.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_15895 -0.7 -2.0 iron dicitrate transport regulator FecR compare
PS417_13805 -0.7 -4.0 4-amino-4-deoxy-L-arabinose transferase compare
PS417_08135 -0.7 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_11930 -0.7 -4.6 hypothetical protein compare
PS417_22450 -0.7 -1.0 ATP-dependent DNA helicase RuvA compare
PS417_16665 -0.7 -1.7 hypothetical protein compare
PS417_26995 -0.7 -4.3 phosphoserine phosphatase compare
PS417_20635 -0.7 -0.7 ABC transporter ATP-binding protein compare
PS417_07160 -0.7 -4.8 glycine cleavage system protein R compare
PS417_23900 -0.7 -3.5 poly(A) polymerase compare
PS417_26530 -0.7 -1.0 hypothetical protein compare
PS417_01590 -0.7 -1.6 polysaccharide deacetylase compare
PS417_17490 -0.7 -1.8 ABC transporter ATP-binding protein compare
PS417_28280 -0.6 -1.9 hypothetical protein compare
PS417_10655 -0.6 -1.8 LuxR family transcriptional regulator compare
PS417_04380 -0.6 -1.3 ABC transporter permease compare
PS417_26655 -0.6 -4.1 chemotaxis protein compare
PS417_00960 -0.6 -2.1 transcriptional regulator compare
PS417_28075 -0.6 -3.4 phosphate ABC transporter permease compare
PS417_19720 -0.6 -1.0 DNA-binding protein compare
PS417_14805 -0.6 -1.0 AraC family transcriptional regulator compare
PS417_15585 -0.6 -2.5 DNA repair nucleotidyltransferase compare
PS417_06075 -0.6 -1.4 hypothetical protein compare
PS417_03465 -0.6 -1.0 type III secretion protein compare
PS417_19605 -0.6 -1.2 hypothetical protein compare
PS417_03785 -0.6 -1.4 pilus assembly protein PilV compare
PS417_12380 -0.6 -3.1 peptidase S54 compare
PS417_24370 -0.6 -0.7 (2Fe-2S)-binding protein compare
PS417_03925 -0.6 -3.7 nicotinate-nucleotide pyrophosphorylase compare
PS417_17515 -0.6 -2.7 GfdT protein compare
PS417_05520 -0.6 -4.6 histidine kinase compare
PS417_17635 -0.6 -2.4 hemolysin secretion protein D compare
PS417_23390 -0.6 -2.7 ubiquinol oxidase subunit II compare
PS417_00245 -0.6 -4.5 oligopeptidase A compare
PS417_11410 -0.6 -2.0 phospholipase compare
PS417_24270 -0.6 -3.0 threonine transporter RhtB compare
PS417_17510 -0.6 -4.0 histidine kinase compare
PS417_09035 -0.6 -2.2 hypothetical protein compare
PS417_28225 -0.6 -1.1 hypothetical protein compare
PS417_18965 -0.6 -1.8 dienelactone hydrolase compare
PS417_24765 -0.6 -2.6 membrane protein compare
PS417_06530 -0.6 -1.4 membrane protein compare
PS417_08740 -0.6 -1.7 ribose-phosphate pyrophosphokinase compare
PS417_10490 -0.6 -2.2 delta-aminolevulinic acid dehydratase compare
PS417_16510 -0.6 -1.7 Clp protease ClpX compare
PS417_08230 -0.6 -1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_04650 -0.6 -1.0 D-alanine--D-alanine ligase compare
PS417_12505 -0.6 -2.5 peptidase compare
PS417_25705 -0.6 -1.3 lipoate--protein ligase compare
PS417_03495 -0.6 -1.2 type III secretory protein EscS compare
PS417_09830 -0.6 -2.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_04385 -0.6 -2.5 organic solvent ABC transporter substrate-binding protein compare
PS417_01635 -0.6 -2.6 nitrogen regulation protein NR(I) compare
PS417_27605 -0.6 -2.6 hypothetical protein compare
PS417_17190 -0.6 -2.9 MarR family transcriptional regulator compare
PS417_19500 -0.6 -2.0 antibiotic synthesis protein MbtH compare
PS417_11375 -0.6 -1.7 hypothetical protein compare
PS417_25380 -0.6 -2.0 hypothetical protein compare
PS417_18200 -0.6 -1.0 glyoxalase compare
PS417_17000 -0.6 -1.7 MerR family transcriptional regulator compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas simiae WCS417

For carbon source Trisodium citrate dihydrate across organisms