Experiment set1IT034 for Variovorax sp. OAS795

Compare to:

L-Threonine carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS03380 -6.8 -4.7 threonine ammonia-lyase compare
ABID97_RS13945 -6.0 -8.5 acyl-CoA carboxylase subunit beta compare
ABID97_RS13995 -5.8 -16.3 excinuclease ABC subunit UvrB compare
ABID97_RS23225 -5.7 -15.2 glutamate synthase-related protein compare
ABID97_RS02215 -5.3 -19.9 3',5'-cyclic-nucleotide phosphodiesterase compare
ABID97_RS13950 -5.3 -10.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABID97_RS17425 -5.1 -15.6 TonB-dependent receptor compare
ABID97_RS06575 -4.7 -7.9 trehalose-phosphatase compare
ABID97_RS12480 -4.7 -10.4 homoserine dehydrogenase compare
ABID97_RS16600 -4.6 -9.9 CysB family HTH-type transcriptional regulator compare
ABID97_RS01960 -4.6 -20.4 alpha-ketoglutarate dehydrogenase compare
ABID97_RS16595 -4.5 -5.6 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS07430 -4.4 -7.6 pantoate--beta-alanine ligase compare
ABID97_RS09180 -4.4 -3.1 DNA polymerase I compare
ABID97_RS08425 -4.1 -4.9 tryptophan synthase subunit alpha compare
ABID97_RS10635 -4.1 -11.3 excinuclease ABC subunit UvrC compare
ABID97_RS01965 -4.1 -13.1 Lrp/AsnC family transcriptional regulator compare
ABID97_RS17895 -4.0 -10.4 transcriptional regulator NrdR compare
ABID97_RS25015 -4.0 -2.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS05250 -3.9 -7.5 anthranilate synthase component I compare
ABID97_RS20615 -3.9 -8.0 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS06365 -3.9 -2.6 TlpA disulfide reductase family protein compare
ABID97_RS02600 -3.7 -2.6 homoserine O-acetyltransferase compare
ABID97_RS01565 -3.7 -13.3 DNA starvation/stationary phase protection protein compare
ABID97_RS13990 -3.6 -3.5 amino acid aminotransferase compare
ABID97_RS10695 -3.6 -9.6 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS22625 -3.4 -12.3 HAMP domain-containing sensor histidine kinase compare
ABID97_RS23220 -3.4 -1.8 glutamate synthase subunit beta compare
ABID97_RS25085 -3.4 -4.0 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS05275 -3.4 -2.3 anthranilate phosphoribosyltransferase compare
ABID97_RS02455 -3.4 -3.8 nucleotidyltransferase family protein compare
ABID97_RS14115 -3.3 -6.3 dihydrolipoyl dehydrogenase compare
ABID97_RS10705 -3.3 -2.3 H-NS histone family protein compare
ABID97_RS13930 -3.2 -9.8 methylmalonyl-CoA mutase compare
ABID97_RS23425 -3.2 -3.1 tRNA-Pro compare
ABID97_RS05770 -3.2 -5.2 nucleoid occlusion factor SlmA compare
ABID97_RS03470 -3.2 -23.3 methionine synthase compare
ABID97_RS07435 -3.1 -5.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS07410 -3.1 -7.3 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS06600 -3.1 -6.4 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS02420 -3.0 -5.8 protealysin inhibitor emfourin compare
ABID97_RS07415 -2.9 -15.3 quinolinate synthase NadA compare
ABID97_RS07405 -2.9 -14.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS28635 -2.9 -5.5 IclR family transcriptional regulator compare
ABID97_RS24170 -2.9 -4.2 ATP-binding protein compare
ABID97_RS14105 -2.8 -2.6 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS22620 -2.8 -10.8 response regulator transcription factor compare
ABID97_RS03125 -2.8 -12.3 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS17410 -2.8 -5.1 helical backbone metal receptor compare
ABID97_RS17590 -2.8 -14.8 endopeptidase La compare
ABID97_RS05280 -2.7 -1.9 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS03450 -2.7 -14.6 homocysteine S-methyltransferase family protein compare
ABID97_RS03910 -2.7 -1.8 orotate phosphoribosyltransferase compare
ABID97_RS08435 -2.6 -1.8 phosphoribosylanthranilate isomerase compare
ABID97_RS13940 -2.6 -5.1 methylmalonyl Co-A mutase-associated GTPase MeaB compare
ABID97_RS04855 -2.6 -3.5 CinA family protein compare
ABID97_RS10690 -2.5 -9.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS21150 -2.5 -9.9 FAD-dependent oxidoreductase compare
ABID97_RS21945 -2.5 -5.2 hemolysin family protein compare
ABID97_RS19375 -2.5 -4.4 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS23455 -2.5 -3.7 hypothetical protein compare
ABID97_RS25345 -2.4 -9.9 transporter associated domain-containing protein compare
ABID97_RS03415 -2.4 -6.2 histidine utilization repressor compare
ABID97_RS13860 -2.3 -6.3 hypothetical protein compare
ABID97_RS17850 -2.3 -1.2 tetratricopeptide repeat protein compare
ABID97_RS05765 -2.2 -2.6 UDP-glucose 4-epimerase GalE compare
ABID97_RS10685 -2.2 -7.6 hypothetical protein compare
ABID97_RS09130 -2.2 -1.2 tRNA-Ala compare
ABID97_RS14090 -2.2 -1.7 response regulator transcription factor compare
ABID97_RS23450 -2.2 -5.4 MBOAT family protein compare
ABID97_RS10680 -2.1 -6.0 histidine phosphatase family protein compare
ABID97_RS10710 -2.1 -10.5 NADPH:quinone oxidoreductase family protein compare
ABID97_RS13980 -2.1 -1.2 RnfABCDGE type electron transport complex subunit B compare
ABID97_RS11545 -2.1 -1.5 branched-chain amino acid ABC transporter permease compare
ABID97_RS12140 -2.1 -7.9 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS05260 -2.0 -1.6 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS06460 -2.0 -1.9 sigma 54-interacting transcriptional regulator compare
ABID97_RS24920 -2.0 -1.7 Holliday junction branch migration protein RuvA compare
ABID97_RS07855 -2.0 -3.1 ABC transporter ATP-binding protein compare
ABID97_RS01105 -2.0 -2.8 AMP-binding protein compare
ABID97_RS08480 -2.0 -1.3 citrate synthase compare
ABID97_RS06450 -2.0 -2.3 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS15665 -1.9 -7.0 [protein-PII] uridylyltransferase compare
ABID97_RS24045 -1.9 -4.2 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS03110 -1.9 -4.4 helix-turn-helix transcriptional regulator compare
ABID97_RS08430 -1.9 -1.3 tryptophan synthase subunit beta compare
ABID97_RS10885 -1.9 -4.8 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS09150 -1.9 -6.0 UvrD-helicase domain-containing protein compare
ABID97_RS21165 -1.9 -4.4 energy-dependent translational throttle protein EttA compare
ABID97_RS16535 -1.8 -7.3 arginine/lysine/ornithine decarboxylase compare
ABID97_RS02510 -1.8 -15.5 NADP-dependent malic enzyme compare
ABID97_RS14095 -1.8 -9.5 PAS domain S-box protein compare
ABID97_RS05370 -1.8 -5.1 ATP-binding protein compare
ABID97_RS05170 -1.8 -2.0 type VI secretion system tube protein Hcp compare
ABID97_RS07440 -1.8 -6.9 L-aspartate oxidase compare
ABID97_RS12180 -1.7 -2.3 hypothetical protein compare
ABID97_RS23915 -1.7 -3.7 heme o synthase compare
ABID97_RS01650 -1.7 -1.2 orotidine-5'-phosphate decarboxylase compare
ABID97_RS17600 -1.7 -2.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS14625 -1.7 -6.3 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS13245 -1.7 -1.3 XRE family transcriptional regulator compare
ABID97_RS11040 -1.6 -1.5 6,7-dimethyl-8-ribityllumazine synthase compare
ABID97_RS17970 -1.6 -5.0 protein TolQ compare
ABID97_RS14850 -1.6 -2.7 P-II family nitrogen regulator compare
ABID97_RS10715 -1.6 -7.4 5'/3'-nucleotidase SurE compare
ABID97_RS03805 -1.6 -1.4 ATP-binding protein compare
ABID97_RS20095 -1.6 -2.1 DNA topoisomerase IV subunit B compare
ABID97_RS03800 -1.6 -2.7 O-antigen ligase family protein compare
ABID97_RS04340 -1.6 -13.9 excinuclease ABC subunit UvrA compare
ABID97_RS00255 -1.6 -10.2 type IV pilus twitching motility protein PilT compare
ABID97_RS04500 -1.6 -1.6 HPr(Ser) kinase/phosphatase compare
ABID97_RS14160 -1.6 -6.2 cell division protein ZapE compare
ABID97_RS02110 -1.6 -10.4 type IV pilus modification protein PilV compare
ABID97_RS07775 -1.6 -4.7 phosphoribosylglycinamide formyltransferase compare
ABID97_RS16695 -1.5 -10.1 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS17250 -1.5 -8.4 3-hydroxybutyrate dehydrogenase compare
ABID97_RS16985 -1.5 -2.9 transcriptional repressor LexA compare
ABID97_RS14100 -1.5 -8.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS02120 -1.5 -7.8 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS07835 -1.4 -5.7 replication-associated recombination protein A compare
ABID97_RS06190 -1.4 -3.5 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS13865 -1.4 -3.5 hypothetical protein compare
ABID97_RS16315 -1.4 -4.5 hypothetical protein compare
ABID97_RS24805 -1.4 -9.2 enoyl-CoA hydratase compare
ABID97_RS23950 -1.3 -5.9 cytochrome c oxidase assembly protein compare
ABID97_RS15375 -1.3 -3.6 DUF934 domain-containing protein compare
ABID97_RS02125 -1.3 -11.3 PilC/PilY family type IV pilus protein compare
ABID97_RS02115 -1.3 -8.4 PilW family protein compare
ABID97_RS19410 -1.3 -3.2 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS10720 -1.3 -3.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS17665 -1.3 -1.7 DUF1993 domain-containing protein compare
ABID97_RS03680 -1.3 -5.2 lysophospholipid transporter LplT compare
ABID97_RS24040 -1.3 -2.0 MarR family transcriptional regulator compare
ABID97_RS14265 -1.2 -6.0 protease modulator HflC compare
ABID97_RS24705 -1.2 -4.6 response regulator compare
ABID97_RS10405 -1.2 -1.3 efflux transporter outer membrane subunit compare
ABID97_RS09595 -1.2 -1.3 Arc family DNA-binding protein compare
ABID97_RS10105 -1.2 -3.6 CBS domain-containing protein compare
ABID97_RS13155 -1.2 -2.9 MarR family winged helix-turn-helix transcriptional regulator compare
ABID97_RS23440 -1.2 -6.4 A24 family peptidase compare
ABID97_RS23710 -1.2 -7.7 RNase adapter RapZ compare
ABID97_RS02140 -1.2 -7.6 sugar transferase compare
ABID97_RS19495 -1.2 -3.7 glucan biosynthesis protein D compare
ABID97_RS27450 -1.2 -1.0 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS06345 -1.2 -3.4 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS10385 -1.2 -1.8 MFS transporter compare
ABID97_RS13750 -1.2 -1.0 hypothetical protein compare
ABID97_RS27795 -1.1 -0.9 TetR/AcrR family transcriptional regulator compare
ABID97_RS05365 -1.1 -2.4 DUF4390 domain-containing protein compare
ABID97_RS09955 -1.1 -7.1 exodeoxyribonuclease III compare
ABID97_RS08350 -1.1 -7.0 translation elongation factor 4 compare
ABID97_RS00540 -1.1 -5.1 HAMP domain-containing sensor histidine kinase compare
ABID97_RS07850 -1.1 -5.7 ABC transporter ATP-binding protein compare
ABID97_RS23780 -1.1 -6.1 ABC transporter permease compare
ABID97_RS23430 -1.1 -6.7 type IV-A pilus assembly ATPase PilB compare
ABID97_RS03495 -1.1 -7.3 TetR family transcriptional regulator compare
ABID97_RS16470 -1.1 -1.6 translational GTPase TypA compare
ABID97_RS12155 -1.1 -5.4 glycogen debranching protein GlgX compare
ABID97_RS16690 -1.1 -3.8 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS16565 -1.1 -6.1 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS07180 -1.1 -5.5 Grx4 family monothiol glutaredoxin compare
ABID97_RS28440 -1.1 -2.1 PrpF domain-containing protein compare
ABID97_RS14925 -1.1 -6.5 arginyltransferase compare
ABID97_RS10560 -1.1 -4.0 3-hydroxyacyl-CoA dehydrogenase compare
ABID97_RS19065 -1.1 -2.5 GntR family transcriptional regulator compare
ABID97_RS08220 -1.1 -6.4 phosphoenolpyruvate carboxylase compare
ABID97_RS01595 -1.1 -4.0 tRNA guanosine(34) transglycosylase Tgt compare
ABID97_RS08445 -1.1 -6.1 FimV/HubP family polar landmark protein compare
ABID97_RS05095 -1.0 -1.0 DUF4150 domain-containing protein compare
ABID97_RS23435 -1.0 -7.1 type II secretion system F family protein compare
ABID97_RS16605 -1.0 -7.7 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS05600 -1.0 -2.3 PhzF family phenazine biosynthesis protein compare
ABID97_RS14260 -1.0 -5.0 FtsH protease activity modulator HflK compare
ABID97_RS19655 -1.0 -7.1 aminomethyl-transferring glycine dehydrogenase compare
ABID97_RS29425 -1.0 -2.2 LysR family transcriptional regulator compare
ABID97_RS21985 -1.0 -2.8 ABC transporter substrate-binding protein compare
ABID97_RS23965 -1.0 -6.2 cytochrome c oxidase subunit II compare
ABID97_RS02130 -1.0 -7.1 type IV pilin protein compare
ABID97_RS14295 -1.0 -6.5 cystathionine beta-lyase compare
ABID97_RS13910 -1.0 -6.1 tyrosine-type recombinase/integrase compare
ABID97_RS07500 -1.0 -1.6 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS01840 -1.0 -6.3 DUF1631 family protein compare
ABID97_RS23330 -1.0 -3.7 c-type cytochrome compare
ABID97_RS25895 -1.0 -1.2 ABC transporter permease compare
ABID97_RS20425 -1.0 -2.6 DUF2818 family protein compare
ABID97_RS11750 -1.0 -1.3 trimeric intracellular cation channel family protein compare
ABID97_RS20520 -1.0 -1.4 polyribonucleotide nucleotidyltransferase compare
ABID97_RS17655 -1.0 -1.5 HAD-IA family hydrolase compare
ABID97_RS22885 -1.0 -1.4 ABC transporter permease compare
ABID97_RS04760 -1.0 -1.2 SPOR domain-containing protein compare
ABID97_RS26160 -1.0 -1.0 nuclear transport factor 2 family protein compare
ABID97_RS17200 -1.0 -7.9 ribonuclease R compare
ABID97_RS25130 -1.0 -5.7 carboxyl transferase domain-containing protein compare
ABID97_RS09935 -1.0 -4.5 hypothetical protein compare
ABID97_RS08775 -1.0 -1.3 ribosome small subunit-dependent GTPase A compare
ABID97_RS20025 -0.9 -1.5 D-glycerate dehydrogenase compare
ABID97_RS02145 -0.9 -4.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS09680 -0.9 -1.4 hypothetical protein compare
ABID97_RS23320 -0.9 -4.8 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS06065 -0.9 -2.8 ProQ/FINO family protein compare


Specific Phenotypes

For 22 genes in this experiment

For carbon source L-Threonine in Variovorax sp. OAS795

For carbon source L-Threonine across organisms