Experiment set1IT034 for Rhizobium sp. OAE497

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS20765 -6.2 -4.2 crotonase/enoyl-CoA hydratase family protein compare
ABIE40_RS06555 -5.6 -3.2 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS20785 -5.5 -6.2 type II toxin-antitoxin system HicA family toxin compare
ABIE40_RS09545 -5.4 -3.6 anthranilate phosphoribosyltransferase compare
ABIE40_RS03665 -5.2 -3.6 ATP phosphoribosyltransferase compare
ABIE40_RS01970 -5.1 -3.5 acetylglutamate kinase compare
ABIE40_RS17530 -5.1 -5.0 diaminopimelate decarboxylase compare
ABIE40_RS02325 -5.1 -3.5 ornithine carbamoyltransferase compare
ABIE40_RS19435 -5.0 -2.9 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS09095 -4.9 -4.7 PAS domain-containing sensor histidine kinase compare
ABIE40_RS20775 -4.8 -13.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
ABIE40_RS09660 -4.8 -13.8 AI-2E family transporter compare
ABIE40_RS20780 -4.8 -19.1 carboxyl transferase domain-containing protein compare
ABIE40_RS03660 -4.7 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS03255 -4.7 -17.4 isocitrate lyase compare
ABIE40_RS19330 -4.6 -3.2 phosphoribosylanthranilate isomerase compare
ABIE40_RS20790 -4.6 -4.9 type II toxin-antitoxin system HicB family antitoxin compare
ABIE40_RS16320 -4.5 -6.9 histidinol-phosphatase compare
ABIE40_RS02725 -4.5 -8.6 histidinol dehydrogenase compare
ABIE40_RS19460 -4.5 -5.3 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS20800 -4.5 -22.1 indolepyruvate ferredoxin oxidoreductase family protein conserved
ABIE40_RS06930 -4.5 -4.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS19440 -4.4 -4.3 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS00930 -4.4 -4.3 ABC transporter permease compare
ABIE40_RS09725 -4.4 -4.2 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS08635 -4.4 -11.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS02730 -4.4 -10.3 UPF0262 family protein compare
ABIE40_RS20770 -4.4 -8.9 hydroxymethylglutaryl-CoA lyase compare
ABIE40_RS18690 -4.3 -10.7 acetyl-CoA C-acetyltransferase compare
ABIE40_RS06270 -4.3 -7.1 amidophosphoribosyltransferase compare
ABIE40_RS17595 -4.3 -2.9 histidinol-phosphate transaminase compare
ABIE40_RS13410 -4.3 -5.1 anthranilate synthase compare
ABIE40_RS19450 -4.3 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS03260 -4.2 -8.1 short-chain fatty acyl-CoA regulator family protein compare
ABIE40_RS00725 -4.2 -2.9 DNA cytosine methyltransferase compare
ABIE40_RS06560 -4.1 -4.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS09360 -4.1 -5.6 excinuclease ABC subunit UvrA compare
ABIE40_RS10720 -3.9 -3.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS10180 -3.9 -5.3 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS20795 -3.9 -14.8 isovaleryl-CoA dehydrogenase compare
ABIE40_RS11495 -3.9 -5.9 acetolactate synthase 3 large subunit compare
ABIE40_RS03405 -3.9 -2.7 anti-sigma factor compare
ABIE40_RS08005 -3.9 -2.6 dihydroxy-acid dehydratase compare
ABIE40_RS19130 -3.8 -3.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS04320 -3.8 -18.3 pyruvate, phosphate dikinase compare
ABIE40_RS23250 -3.8 -11.8 hypothetical protein compare
ABIE40_RS19490 -3.7 -13.8 malate synthase G compare
ABIE40_RS18920 -3.6 -5.2 glutamate 5-kinase compare
ABIE40_RS13130 -3.6 -11.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE40_RS00580 -3.6 -2.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS05430 -3.6 -2.4 phosphoribosylamine--glycine ligase compare
ABIE40_RS06050 -3.5 -6.3 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS05685 -3.5 -14.2 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS00245 -3.5 -11.9 prephenate dehydratase compare
ABIE40_RS00625 -3.5 -12.7 ABC transporter permease compare
ABIE40_RS19700 -3.5 -2.4 MBL fold metallo-hydrolase compare
ABIE40_RS15920 -3.4 -1.1 50S ribosomal protein L31 compare
ABIE40_RS05680 -3.4 -8.1 cytochrome c maturation protein CcmE compare
ABIE40_RS19480 -3.3 -3.2 DUF1402 family protein compare
ABIE40_RS24310 -3.3 -10.4 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS10155 -3.3 -2.1 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS13120 -3.3 -10.6 cytochrome c1 compare
ABIE40_RS19445 -3.3 -3.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS09170 -3.3 -5.4 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS00935 -3.3 -6.2 ABC transporter substrate-binding protein compare
ABIE40_RS27255 -3.2 -2.6 hypothetical protein compare
ABIE40_RS19415 -3.2 -11.6 phosphoenolpyruvate carboxykinase compare
ABIE40_RS23455 -3.2 -7.1 GntR family transcriptional regulator compare
ABIE40_RS20445 -3.2 -1.5 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS14990 -3.2 -11.4 glycosyltransferase family 2 protein compare
ABIE40_RS11175 -3.2 -7.3 cobyric acid synthase compare
ABIE40_RS10200 -3.1 -2.1 Grx4 family monothiol glutaredoxin compare
ABIE40_RS09320 -3.1 -12.9 extracellular solute-binding protein compare
ABIE40_RS17590 -3.1 -3.0 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS02320 -3.1 -6.5 aspartate aminotransferase family protein compare
ABIE40_RS03250 -3.0 -2.0 hypothetical protein compare
ABIE40_RS18925 -2.9 -6.0 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS04070 -2.9 -6.4 heme o synthase compare
ABIE40_RS10345 -2.9 -5.9 RNA polymerase-binding protein DksA compare
ABIE40_RS13125 -2.9 -14.5 cytochrome b N-terminal domain-containing protein compare
ABIE40_RS18290 -2.9 -11.6 heme ABC transporter permease compare
ABIE40_RS17525 -2.9 -2.4 lipoprotein compare
ABIE40_RS03290 -2.9 -14.0 acetoacetate--CoA ligase compare
ABIE40_RS12860 -2.9 -1.3 Lrp/AsnC family transcriptional regulator compare
ABIE40_RS19355 -2.9 -3.1 thioredoxin compare
ABIE40_RS04060 -2.9 -11.4 cytochrome c oxidase subunit II compare
ABIE40_RS16645 -2.8 -15.0 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS18300 -2.8 -8.0 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS10785 -2.8 -4.6 acyl-CoA thioesterase compare
ABIE40_RS19395 -2.8 -4.2 PTS sugar transporter subunit IIA compare
ABIE40_RS19360 -2.7 -3.7 double-strand break repair helicase AddA compare
ABIE40_RS04085 -2.7 -9.4 cytochrome c oxidase subunit 3 compare
ABIE40_RS00630 -2.7 -8.5 ABC transporter ATP-binding protein compare
ABIE40_RS00490 -2.7 -11.3 DNA polymerase I compare
ABIE40_RS09085 -2.7 -5.0 nitrogen regulation protein NR(II) compare
ABIE40_RS05660 -2.7 -3.2 response regulator transcription factor compare
ABIE40_RS17650 -2.6 -6.0 cobaltochelatase subunit CobS compare
ABIE40_RS08140 -2.6 -12.5 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS04065 -2.6 -11.7 cytochrome c oxidase subunit I compare
ABIE40_RS00620 -2.6 -9.3 microcin C ABC transporter permease YejB compare
ABIE40_RS18880 -2.6 -12.3 UDP-glucose 4-epimerase GalE compare
ABIE40_RS17515 -2.6 -6.9 TlpA disulfide reductase family protein compare
ABIE40_RS10725 -2.5 -3.4 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS14955 -2.5 -9.3 sugar transferase compare
ABIE40_RS14980 -2.5 -5.8 glycoside hydrolase family 16 protein compare
ABIE40_RS19365 -2.5 -3.3 double-strand break repair protein AddB compare
ABIE40_RS02305 -2.4 -5.7 phosphate signaling complex protein PhoU compare
ABIE40_RS18055 -2.4 -4.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS20905 -2.4 -4.9 IclR family transcriptional regulator compare
ABIE40_RS11960 -2.4 -1.6 energy-dependent translational throttle protein EttA compare
ABIE40_RS09090 -2.4 -8.1 nitrogen regulation protein NR(I) compare
ABIE40_RS18975 -2.4 -10.1 S41 family peptidase compare
ABIE40_RS18775 -2.4 -15.0 pyruvate carboxylase compare
ABIE40_RS04080 -2.3 -9.2 cytochrome c oxidase assembly protein compare
ABIE40_RS06730 -2.3 -6.3 riboflavin synthase compare
ABIE40_RS01765 -2.3 -5.6 [protein-PII] uridylyltransferase compare
ABIE40_RS20450 -2.3 -2.9 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS19260 -2.3 -3.0 DNA polymerase III subunit epsilon compare
ABIE40_RS20435 -2.2 -3.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS14985 -2.2 -2.5 glycosyltransferase compare
ABIE40_RS12360 -2.2 -10.8 DUF5131 family protein compare
ABIE40_RS18285 -2.2 -6.6 heme exporter protein CcmB compare
ABIE40_RS16170 -2.2 -2.8 DUF882 domain-containing protein compare
ABIE40_RS11020 -2.1 -8.0 substrate-binding domain-containing protein compare
ABIE40_RS06725 -2.1 -5.2 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS05690 -2.1 -3.9 cytochrome c-type biogenesis protein compare
ABIE40_RS05545 -2.0 -2.3 Dabb family protein compare
ABIE40_RS00925 -2.0 -4.8 ABC transporter permease compare
ABIE40_RS00235 -2.0 -5.3 cytochrome c family protein compare
ABIE40_RS30865 -2.0 -3.0 CheR family methyltransferase compare
ABIE40_RS05665 -2.0 -3.3 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS07270 -2.0 -6.6 DUF1467 family protein compare
ABIE40_RS20440 -1.9 -2.1 cobalt-precorrin-6A reductase compare
ABIE40_RS06915 -1.9 -10.6 COX15/CtaA family protein compare
ABIE40_RS13370 -1.9 -8.4 CDF family cation efflux transporter EmfA compare
ABIE40_RS12925 -1.9 -9.9 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS00450 -1.9 -4.9 molecular chaperone DnaJ compare
ABIE40_RS01405 -1.8 -5.7 glutathione synthase compare
ABIE40_RS01930 -1.8 -1.6 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS17645 -1.8 -4.7 cobaltochelatase subunit CobT compare
ABIE40_RS03515 -1.8 -2.9 glutamate--cysteine ligase compare
ABIE40_RS30775 -1.8 -1.7 ferritin-like domain-containing protein compare
ABIE40_RS11165 -1.7 -1.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS21985 -1.7 -5.3 MarR family transcriptional regulator compare
ABIE40_RS05365 -1.7 -6.1 tetratricopeptide repeat protein compare
ABIE40_RS11105 -1.7 -6.4 cobyrinate a,c-diamide synthase compare
ABIE40_RS19805 -1.7 -1.6 hypothetical protein compare
ABIE40_RS12135 -1.6 -4.9 methionine synthase compare
ABIE40_RS08425 -1.6 -1.9 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS09155 -1.6 -3.7 DUF934 domain-containing protein compare
ABIE40_RS15730 -1.6 -2.6 crossover junction endodeoxyribonuclease RuvC compare
ABIE40_RS18685 -1.6 -2.7 beta-ketoacyl-ACP reductase compare
ABIE40_RS08865 -1.6 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE40_RS27395 -1.6 -1.3 hypothetical protein compare
ABIE40_RS16655 -1.6 -4.5 creatininase family protein compare
ABIE40_RS01680 -1.5 -7.3 helix-turn-helix domain-containing protein compare
ABIE40_RS11095 -1.5 -3.9 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS18280 -1.5 -2.8 heme ABC exporter ATP-binding protein CcmA compare
ABIE40_RS05995 -1.5 -7.3 MurR/RpiR family transcriptional regulator compare
ABIE40_RS17020 -1.5 -6.9 sugar-binding transcriptional regulator compare
ABIE40_RS29390 -1.5 -1.0 hypothetical protein compare
ABIE40_RS22725 -1.4 -4.5 anti-sigma factor compare
ABIE40_RS25740 -1.4 -5.9 FadR/GntR family transcriptional regulator compare
ABIE40_RS10850 -1.4 -3.7 excinuclease ABC subunit UvrB compare
ABIE40_RS06645 -1.4 -1.7 hypothetical protein compare
ABIE40_RS11155 -1.4 -6.0 cobaltochelatase subunit CobN compare
ABIE40_RS26010 -1.4 -1.9 aldolase/citrate lyase family protein compare
ABIE40_RS10425 -1.4 -4.6 ABC transporter ATP-binding protein compare
ABIE40_RS13195 -1.4 -1.7 metalloregulator ArsR/SmtB family transcription factor compare
ABIE40_RS18640 -1.4 -6.0 M48 family metalloprotease compare
ABIE40_RS10590 -1.4 -1.8 hypothetical protein compare
ABIE40_RS10390 -1.3 -1.3 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS19120 -1.3 -11.2 NAD-glutamate dehydrogenase compare
ABIE40_RS24490 -1.3 -1.2 flavin reductase compare
ABIE40_RS20430 -1.3 -2.8 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS18970 -1.3 -2.4 murein hydrolase activator EnvC compare
ABIE40_RS23940 -1.3 -4.6 TetR/AcrR family transcriptional regulator compare
ABIE40_RS18805 -1.3 -1.4 DUF1328 domain-containing protein compare
ABIE40_RS06575 -1.3 -8.0 RNA degradosome polyphosphate kinase compare
ABIE40_RS12845 -1.3 -2.0 glycosyltransferase family 4 protein compare
ABIE40_RS11490 -1.3 -4.1 acetolactate synthase small subunit compare
ABIE40_RS14855 -1.3 -4.5 NAD-dependent epimerase compare
ABIE40_RS30895 -1.3 -2.5 cytochrome o ubiquinol oxidase subunit IV compare
ABIE40_RS08935 -1.3 -2.1 RIP metalloprotease RseP compare
ABIE40_RS09720 -1.3 -2.7 GTP cyclohydrolase I FolE compare
ABIE40_RS17565 -1.2 -1.7 ABC transporter permease compare
ABIE40_RS17010 -1.2 -6.1 sugar ABC transporter permease compare
ABIE40_RS11950 -1.2 -5.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS14850 -1.2 -5.2 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE40_RS24380 -1.2 -5.5 FGGY-family carbohydrate kinase compare
ABIE40_RS19040 -1.2 -5.3 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS12115 -1.2 -1.8 GntR family transcriptional regulator compare
ABIE40_RS05670 -1.2 -4.6 membrane protein compare
ABIE40_RS19050 -1.2 -5.7 3-isopropylmalate dehydrogenase compare
ABIE40_RS25880 -1.2 -4.5 ROK family transcriptional regulator compare
ABIE40_RS11060 -1.1 -3.4 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS09425 -1.1 -3.0 peptidylprolyl isomerase compare
ABIE40_RS22300 -1.1 -3.1 superoxide dismutase compare
ABIE40_RS15010 -1.1 -5.1 metallophosphoesterase compare
ABIE40_RS08520 -1.1 -2.3 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Sodium pyruvate in Rhizobium sp. OAE497

For carbon source Sodium pyruvate across organisms