Experiment set1IT034 for Enterobacter asburiae PDN3

Compare to:

MS_media no stress control

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2635 -5.4 -10.6 Fructose-2,6-bisphosphatase compare
EX28DRAFT_0536 -4.1 -2.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_0932 -3.7 -5.5 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_2701 -3.7 -8.2 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2916 -3.6 -9.6 diaminopimelate decarboxylase compare
EX28DRAFT_2651 -3.4 -5.8 glutamate 5-kinase compare
EX28DRAFT_0933 -3.3 -13.0 tryptophan synthase, beta subunit compare
EX28DRAFT_1986 -3.3 -1.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_2632 -3.2 -11.3 Major Facilitator Superfamily compare
EX28DRAFT_2272 -3.2 -10.1 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_2893 -3.1 -3.7 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_0534 -3.1 -4.7 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_0934 -3.1 -10.3 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_4478 -3.0 -6.0 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_3276 -3.0 -3.7 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_4544 -3.0 -0.8 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_0537 -3.0 -9.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_4422 -3.0 -4.6 argininosuccinate lyase compare
EX28DRAFT_0936 -2.9 -5.2 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0538 -2.9 -5.5 histidinol-phosphate aminotransferase compare
EX28DRAFT_3668 -2.9 -8.8 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_4418 -2.8 -7.2 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_0935 -2.8 -7.0 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_2027 -2.8 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_4153 -2.8 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_2917 -2.7 -3.5 Transcriptional regulator compare
EX28DRAFT_0046 -2.6 -2.5 shikimate dehydrogenase compare
EX28DRAFT_2585 -2.6 -1.4 pyrroline-5-carboxylate reductase compare
EX28DRAFT_0539 -2.5 -4.7 histidinol dehydrogenase compare
EX28DRAFT_4419 -2.5 -1.7 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_1121 -2.5 -2.8 Sugar kinases, ribokinase family compare
EX28DRAFT_2252 -2.4 -2.3 TolA protein compare
EX28DRAFT_4493 -2.4 -3.2 Transcriptional regulator compare
EX28DRAFT_3730 -2.4 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_3669 -2.4 -5.3 3-isopropylmalate dehydrogenase compare
EX28DRAFT_3754 -2.4 -1.1 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_4292 -2.4 -7.6 Acetyltransferase (GNAT) domain compare
EX28DRAFT_3728 -2.4 -2.4 L-aspartate 1-decarboxylase (EC 4.1.1.11) compare
EX28DRAFT_3729 -2.3 -5.2 pantoate--beta-alanine ligase compare
EX28DRAFT_2650 -2.3 -7.3 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_3224 -2.3 -4.3 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_2265 -2.3 -0.8 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_3275 -2.3 -12.1 Glutamate synthase domain 2 compare
EX28DRAFT_3667 -2.3 -2.9 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_4446 -2.2 -5.5 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_0535 -2.2 -3.7 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_4297 -2.2 -2.1 cell division ATP-binding protein FtsE compare
EX28DRAFT_0533 -2.2 -4.4 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_3670 -2.2 -7.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_0540 -2.2 -5.6 ATP phosphoribosyltransferase compare
EX28DRAFT_4156 -2.0 -1.9 ribulose-phosphate 3-epimerase compare
EX28DRAFT_4443 -2.0 -8.5 dihydroxy-acid dehydratase compare
EX28DRAFT_4444 -1.9 -4.3 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_3614 -1.9 -6.2 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_4420 -1.8 -0.6 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_2043 -1.8 -6.3 transcriptional regulator, AsnC family compare
EX28DRAFT_2546 -1.7 -4.8 2-dehydropantoate 2-reductase compare
EX28DRAFT_4445 -1.7 -3.1 Transcriptional regulator compare
EX28DRAFT_2851 -1.6 -2.3 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_4411 -1.6 -7.7 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_2633 -1.6 -2.6 Uncharacterised nucleotidyltransferase compare
EX28DRAFT_3046 -1.6 -8.2 cystathionine beta-lyase, bacterial compare
EX28DRAFT_4350 -1.6 -0.7 nitrogen regulation protein NR(I) compare
EX28DRAFT_4331 -1.5 -6.0 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_2634 -1.5 -5.0 hypothetical protein compare
EX28DRAFT_3883 -1.5 -2.9 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_4507 -1.5 -5.2 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_3879 -1.5 -3.7 Glycosyltransferase compare
EX28DRAFT_4170 -1.5 -6.8 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_3671 -1.4 -3.1 RNA compare
EX28DRAFT_0521 -1.4 -4.5 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2699 -1.4 -3.4 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_3613 -1.3 -3.2 RNA compare
EX28DRAFT_4421 -1.3 -0.5 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_3461 -1.3 -3.1 ornithine carbamoyltransferase compare
EX28DRAFT_4442 -1.3 -3.1 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_1123 -1.3 -6.4 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_2271 -1.3 -3.5 hypothetical protein compare
EX28DRAFT_0531 -1.3 -5.1 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2267 -1.3 -5.1 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_0494 -1.2 -1.6 Protein-tyrosine-phosphatase compare
EX28DRAFT_3710 -1.2 -5.1 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_3285 -1.2 -3.4 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_2531 -1.2 -2.7 endopeptidase La compare
EX28DRAFT_4280 -1.2 -0.8 Protein of unknown function (DUF2756) compare
EX28DRAFT_0526 -1.2 -2.2 hypothetical protein compare
EX28DRAFT_0693 -1.2 -1.2 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_0948 -1.1 -1.5 hypothetical protein compare
EX28DRAFT_0726 -1.1 -3.1 C-terminal peptidase (prc) compare
EX28DRAFT_4505 -1.1 -3.1 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_1740 -1.1 -0.9 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_0272 -1.1 -1.1 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0291 -1.1 -1.8 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_2853 -1.1 -3.7 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_0918 -1.1 -1.6 Ogr/Delta-like zinc finger compare
EX28DRAFT_2852 -1.1 -6.2 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_3401 -1.0 -0.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_2216 -1.0 -4.6 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_0092 -1.0 -0.5 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_0167 -1.0 -1.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_0214 -1.0 -2.9 cysteine synthase A compare
EX28DRAFT_0857 -1.0 -1.2 tRNA compare
EX28DRAFT_4386 -1.0 -1.3 Signal transduction histidine kinase compare
EX28DRAFT_1122 -1.0 -4.8 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_2240 -1.0 -2.3 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_2702 -1.0 -2.7 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_4085 -1.0 -4.0 Predicted xylanase/chitin deacetylase compare
EX28DRAFT_0068 -0.9 -1.3 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_2541 -0.9 -1.2 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_0972 -0.9 -1.8 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_1692 -0.9 -1.1 Biofilm development protein YmgB/AriR compare
EX28DRAFT_0523 -0.9 -0.8 Glycosyltransferase like family 2 compare
EX28DRAFT_2846 -0.9 -2.5 adenylyl-sulfate kinase compare
EX28DRAFT_2964 -0.9 -4.5 5,10-methenyltetrahydrofolate synthetase compare
EX28DRAFT_1841 -0.9 -1.1 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_2938 -0.9 -1.6 tRNA compare
EX28DRAFT_2492 -0.9 -2.4 Protein of unknown function (DUF2496) compare
EX28DRAFT_2945 -0.9 -1.6 tyrosine recombinase XerD compare
EX28DRAFT_1124 -0.9 -5.8 sucrose-6-phosphate hydrolase compare
EX28DRAFT_2250 -0.9 -1.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0952 -0.8 -2.5 Predicted membrane protein compare
EX28DRAFT_3253 -0.8 -2.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3278 -0.8 -2.1 Glutathione S-transferase compare
EX28DRAFT_0076 -0.8 -1.9 elongation factor 4 compare
EX28DRAFT_0111 -0.8 -1.3 FeS cluster assembly scaffold IscU compare
EX28DRAFT_4212 -0.8 -0.7 Acetyltransferase (GNAT) family compare
EX28DRAFT_4387 -0.8 -2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_2677 -0.8 -1.0 hypothetical protein compare
EX28DRAFT_2269 -0.8 -2.8 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_2848 -0.8 -3.9 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_1363 -0.8 -2.8 Domain of unknown function (DUF1852) compare
EX28DRAFT_3320 -0.8 -0.6 hypothetical protein compare
EX28DRAFT_1644 -0.8 -1.8 Predicted oxidoreductase compare
EX28DRAFT_2967 -0.8 -2.6 transcriptional regulator, ArgP family compare
EX28DRAFT_1877 -0.8 -2.0 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
EX28DRAFT_1719 -0.7 -0.6 integration host factor, alpha subunit compare
EX28DRAFT_2944 -0.7 -1.1 Protein-disulfide isomerase compare
EX28DRAFT_3507 -0.7 -0.9 Response regulator compare
EX28DRAFT_0069 -0.7 -0.9 Superfamily II DNA and RNA helicases compare
EX28DRAFT_0545 -0.7 -1.6 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_3645 -0.7 -1.2 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_1300 -0.7 -1.3 hypothetical protein compare
EX28DRAFT_3880 -0.7 -5.4 Glycosyltransferase compare
EX28DRAFT_3082 -0.7 -2.7 Uncharacterized conserved protein compare
EX28DRAFT_0529 -0.7 -3.0 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_3900 -0.7 -1.3 SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal compare
EX28DRAFT_3259 -0.7 -4.5 Predicted P-loop-containing kinase compare
EX28DRAFT_2948 -0.7 -3.0 Uncharacterized conserved protein compare
EX28DRAFT_1834 -0.7 -2.8 beta-ketoacyl-acyl-carrier-protein synthase II compare
EX28DRAFT_2849 -0.7 -1.9 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_2268 -0.7 -4.0 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_2037 -0.7 -1.3 DMSO reductase, iron-sulfur subunit compare
EX28DRAFT_4440 -0.7 -3.4 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_0725 -0.7 -1.5 Activator of osmoprotectant transporter ProP compare
EX28DRAFT_0132 -0.6 -1.9 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_3129 -0.6 -2.1 transcriptional regulator, TraR/DksA family compare
EX28DRAFT_4347 -0.6 -0.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4184 -0.6 -0.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3877 -0.6 -4.3 hypothetical protein compare
EX28DRAFT_0779 -0.6 -2.5 hypothetical protein compare
EX28DRAFT_2847 -0.6 -4.2 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_3540 -0.6 -1.2 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
EX28DRAFT_1590 -0.6 -1.1 hypothetical protein compare
EX28DRAFT_2543 -0.6 -2.0 protoheme IX farnesyltransferase compare
EX28DRAFT_0190 -0.6 -1.0 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_2773 -0.6 -1.0 RNA compare
EX28DRAFT_1825 -0.6 -1.2 uncharacterized proteobacterial lipoprotein compare
EX28DRAFT_2532 -0.6 -1.2 RNA compare
EX28DRAFT_3875 -0.6 -4.9 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0732 -0.6 -2.0 YebO-like protein compare
EX28DRAFT_3864 -0.6 -3.8 Membrane-bound metallopeptidase compare
EX28DRAFT_2225 -0.6 -2.7 3-carboxymuconate cyclase compare
EX28DRAFT_3878 -0.6 -3.0 lipopolysaccharide heptosyltransferase III, putative compare
EX28DRAFT_2539 -0.6 -2.4 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_2946 -0.6 -2.4 flavodoxin, long chain compare
EX28DRAFT_0118 -0.6 -2.1 SseB protein C-terminal domain/SseB protein N-terminal domain compare
EX28DRAFT_0181 -0.6 -2.0 Glycine cleavage system regulatory protein compare
EX28DRAFT_0166 -0.6 -2.9 polyphosphate kinase 1 compare
EX28DRAFT_4023 -0.6 -4.5 potassium uptake protein compare
EX28DRAFT_1584 -0.6 -1.8 hypothetical protein compare
EX28DRAFT_3647 -0.6 -2.9 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_2213 -0.5 -1.9 dethiobiotin synthase compare
EX28DRAFT_3659 -0.5 -2.6 thiamine ABC transporter, permease protein compare
EX28DRAFT_2974 -0.5 -2.0 transketolase, bacterial and yeast compare
EX28DRAFT_0770 -0.5 -1.5 Transglycosylase SLT domain compare
EX28DRAFT_0519 -0.5 -3.7 Predicted nucleoside-diphosphate sugar epimerases compare
EX28DRAFT_3302 -0.5 -3.4 diguanylate cyclase (GGDEF) domain compare
EX28DRAFT_0332 -0.5 -3.5 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_2758 -0.5 -1.9 Uncharacterized conserved protein compare
EX28DRAFT_2400 -0.5 -0.5 Cold shock proteins compare
EX28DRAFT_0074 -0.5 -2.9 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_3444 -0.5 -2.3 reactive intermediate/imine deaminase compare
EX28DRAFT_1932 -0.5 -1.1 Mg/Co/Ni transporter MgtE (contains CBS domain) compare
EX28DRAFT_3948 -0.5 -1.3 KAP family P-loop domain compare
EX28DRAFT_3410 -0.5 -1.1 hypothetical protein compare
EX28DRAFT_2901 -0.5 -2.3 prepilin-type N-terminal cleavage/methylation domain compare
EX28DRAFT_4155 -0.5 -1.6 DNA adenine methylase (dam) compare
EX28DRAFT_0706 -0.5 -1.0 Entner-Doudoroff aldolase compare
EX28DRAFT_0073 -0.5 -0.6 Negative regulator of sigma E activity compare
EX28DRAFT_1552 -0.5 -2.3 Uncharacterized conserved protein compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in no stress control experiments