Experiment set1IT034 for Caulobacter crescentus NA1000 Δfur

Compare to:

PYE with Dimethyl Sulfoxide 0.4 %

200 most important genes:

  gene name fitness t score description  
CCNA_03577 -3.8 -2.6 DNA polymerase I compare
CCNA_02941 -3.6 -1.9 transcription elongation factor greA compare
CCNA_00294 -3.6 -2.7 phosphate transport ATP-binding protein pstB compare
CCNA_03975 -3.6 -1.3 hypothetical protein compare
CCNA_01496 -3.5 -2.2 2-dehydro-3-deoxyphosphooctonate aldolase compare
CCNA_01118 -3.4 -2.3 hypothetical protein compare
CCNA_03337 -3.3 -3.2 peptidoglycan-associated lipoprotein pal compare
CCNA_03072 -3.2 -2.2 TetR-family transcriptional regulator compare
CCNA_00304 -2.9 -3.4 3-deoxy-D-manno-octulosonic-acid transferase compare
CCNA_01692 -2.9 -3.4 GMP synthase GuaA compare
CCNA_00708 -2.9 -2.0 cobaltochelatase cobT subunit compare
CCNA_01988 -2.8 -1.9 UDP-N-acetylglucosamine O-acyltransferase LpxA compare
CCNA_00953 -2.8 -3.1 flagellar motor switch protein FliN compare
CCNA_01556 -2.7 -2.6 LacI-family transcriptional regulator compare
CCNA_03650 -2.7 -1.8 mannose-1-phosphate guanyltransferase compare
CCNA_01538 -2.6 -1.8 pyruvate phosphate dikinase compare
CCNA_03755 -2.6 -6.8 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase compare
CCNA_01676 -2.6 -1.7 hypothetical protein compare
CCNA_01103 -2.4 -5.5 ADP-heptose--LPS heptosyltransferase compare
CCNA_02344 -2.3 -2.2 phosphoglycerate mutase compare
CCNA_01971 -2.2 -2.6 peptidyl-prolyl cis-trans isomerase compare
CCNA_02278 -2.2 -1.2 hypothetical protein compare
CCNA_03878 -2.2 -3.0 ferrochelatase compare
CCNA_00976 -2.2 -2.6 signal peptide peptidase A compare
CCNA_00893 -2.2 -3.3 helix-turn-helix DNA-binding protein compare
CCNA_00293 -2.2 -3.2 phosphate transport system permease protein pstA compare
CCNA_03859 -2.1 -2.8 two-component response regulator cenR compare
CCNA_03336 -2.1 -6.0 Tol system periplasmic component YbgF compare
CCNA_00239 -2.1 -1.8 serine kinase/phosphatase HprK compare
CCNA_00135 -2.0 -5.9 trypsin-like peptidase compare
CCNA_00502 -2.0 -5.1 glycosyl transferase family protein compare
CCNA_03736 -2.0 -1.4 YGGT family membrane protein compare
CCNA_02650 -1.9 -3.8 N-acetyl-anhydromuramyl-L-alanine amidase compare
CCNA_03135 -1.9 -5.8 flagellum-specific ATP synthase fliL compare
CCNA_03835 -1.9 -2.6 3-oxoacyl-(acyl-carrier-protein) synthase compare
CCNA_02085 -1.9 -4.3 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase compare
CCNA_03683 -1.9 -2.8 maleylpyruvate isomerase compare
CCNA_01275 -1.8 -1.8 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase compare
CCNA_00306 -1.8 -4.9 lysophospholipid acyltransferase compare
CCNA_03960 -1.8 -1.3 hypothetical protein compare
CCNA_03548 -1.8 -6.3 carboxy-terminal processing protease precursor compare
CCNA_02320 -1.8 -5.4 2'-deoxycytidine 5'-triphosphate deaminase compare
CCNA_00128 -1.7 -1.8 argininosuccinate synthase compare
CCNA_00217 -1.6 -1.3 thiol:disulfide interchange protein DsbD compare
CCNA_03702 -1.6 -2.1 SSU ribosomal protein S1P compare
CCNA_03786 -1.6 -3.4 heme chaperone heme-lyase compare
CCNA_03277 -1.6 -4.5 glycosyltransferase compare
CCNA_01131 -1.6 -5.2 flagellar biosynthesis protein FlhB compare
CCNA_02942 -1.5 -4.5 nucleoside-diphosphate-sugar epimerase compare
CCNA_01130 -1.5 -3.6 flagellar biosynthesis protein FliR compare
CCNA_01968 -1.5 -1.2 pentapeptide repeats containing protein compare
CCNA_02064 -1.5 -1.8 UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase compare
CCNA_03013 -1.4 -4.6 alkyl hydroperoxide reductase subunit F compare
CCNA_00667 -1.4 -5.9 lipopolysaccharide biosynthesis protein compare
CCNA_00952 -1.3 -4.1 flagellar assembly protein FlbE/FliH compare
CCNA_02062 -1.3 -3.4 DNA repair protein recN compare
CCNA_03516 -1.3 -2.4 protoheme IX farnesyltransferase coxE compare
CCNA_01279 -1.3 -1.8 inorganic polyphosphate/ATP-NAD kinase compare
CCNA_01407 -1.3 -2.4 hypothetical protein compare
CCNA_00292 -1.3 -3.0 phosphate transport system permease protein pstC compare
CCNA_00134 -1.3 -3.9 surface protein compare
CCNA_01002 -1.2 -2.2 flagellar biosyntheis protein FliP compare
CCNA_03782 -1.2 -1.6 cytochrome c biogenesis ATP-binding export protein CcmA compare
CCNA_03652 -1.2 -4.7 ATP-dependent nuclease subunit A compare
CCNA_03726 -1.2 -4.4 3-amino-5-hydroxybenzoic acid synthase family compare
CCNA_03354 -1.2 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
CCNA_03732 -1.2 -3.4 N-acyl-D-glucosamine 2-epimerase compare
CCNA_01324 -1.2 -1.7 LSU ribosomal protein L30P compare
CCNA_03872 -1.2 -4.9 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase compare
CCNA_02333 -1.2 -2.2 lipid A biosynthesis lauroyl acyltransferase compare
CCNA_01129 -1.2 -2.0 flagellar biosynthesis protein FliQ compare
CCNA_02329 -1.2 -1.3 exodeoxyribonuclease VII large subunit compare
CCNA_00296 -1.2 -5.0 phosphate regulon response regulator PhoB compare
CCNA_01474 -1.2 -3.1 cytochrome cbb3 oxidase maturation protein ccoS compare
CCNA_01060 -1.2 -2.1 type I protein secretion ATP-binding protein RsaD compare
CCNA_02572 -1.2 -3.8 adenylosuccinate lyase compare
CCNA_00512 -1.1 -4.0 GTP-binding protein, probable translation factor compare
CCNA_03114 -1.1 -2.2 hypothetical protein compare
CCNA_00379 -1.1 -1.0 thiol:disulfide interchange protein dsbA compare
CCNA_03651 -1.1 -2.7 ATP-dependent nuclease subunit B compare
CCNA_03201 -1.1 -7.5 adenylosuccinate synthetase compare
CCNA_R0010 -1.1 -4.6 tRNA-Arg compare
CCNA_00375 -1.1 -4.8 hypothetical protein compare
CCNA_00036 -1.1 -2.1 ribosome-binding factor A compare
CCNA_03329 -1.1 -1.3 hypothetical protein compare
CCNA_01732 -1.1 -1.8 DNA repair protein RadA compare
CCNA_02645 -1.1 -1.6 S-adenosyl-methyltransferase MraW compare
CCNA_03026 -1.1 -3.3 two-component response regulator petR compare
CCNA_02094 -1.0 -2.1 MviM-like NAD-dependent oxidoreductase compare
CCNA_03790 -1.0 -2.1 hypothetical protein compare
CCNA_01461 -1.0 -4.2 hypothetical protein compare
CCNA_03052 -1.0 -3.2 acyltransferase compare
CCNA_02704 -1.0 -2.5 NADP-dependent malic enzyme compare
CCNA_00240 -1.0 -1.6 PTS system, IIA component compare
CCNA_01719 -1.0 -1.1 hypothetical protein compare
CCNA_01467 -1.0 -6.3 cytochrome cbb3 oxidase subunit I ccoN compare
CCNA_01817 -1.0 -3.3 nitrogen assimilation regulatory protein ntrX compare
CCNA_02818 -1.0 -0.9 hypothetical protein compare
CCNA_02390 -1.0 -1.8 phosphoglycolate phosphatase compare
CCNA_02449 -1.0 -3.3 hypothetical protein compare
CCNA_00892 -0.9 -3.1 phosphoenolpyruvate-protein phosphotransferase PtsP compare
CCNA_01844 -0.9 -3.1 DNA integration/recombination/inversion protein compare
CCNA_03657 -0.9 -1.9 tryptophan synthase alpha chain compare
CCNA_R0047 -0.9 -1.6 tRNA-Val compare
CCNA_02777 -0.9 -3.0 vitamin B12 receptor compare
CCNA_00257 -0.9 -4.9 adenosylhomocysteinase compare
CCNA_03916 -0.9 -1.4 hypothetical protein compare
CCNA_01123 -0.9 -5.2 peptide chain release factor RF-3 compare
CCNA_03397 -0.9 -1.8 conserved coiled-coil domain protein compare
CCNA_02664 -0.9 -1.0 flagellar assembly regulator FliX compare
CCNA_00956 -0.9 -3.8 flagellar biosynthesis protein FlhA compare
CCNA_00950 -0.9 -4.3 flagellar M-ring protein FliF compare
CCNA_00252 -0.9 -4.7 multimodular transpeptidase-transglycosylase PbpX compare
CCNA_00860 -0.9 -2.6 holdfast inhibitor protein HfiA compare
CCNA_00425 -0.9 -1.7 hypothetical protein compare
CCNA_03788 -0.9 -1.8 thiol:disulfide interchange protein tlpA compare
CCNA_02346 -0.9 -2.1 arabinose-5-phosphate isomerase compare
CCNA_02177 -0.9 -4.0 hypothetical protein compare
CCNA_00543 -0.9 -3.5 methyl-accepting chemotaxis protein compare
CCNA_03944 -0.8 -0.7 hypothetical protein compare
CCNA_01003 -0.8 -2.8 flagellar biosynthesis protein FliO compare
CCNA_02252 -0.8 -3.7 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_02655 -0.8 -3.6 NTF2 superfamily protein compare
CCNA_03030 -0.8 -0.9 cytochrome c2 compare
CCNA_00209 -0.8 -4.4 undecaprenyl-phosphomannose:protein mannosyltransferase compare
CCNA_02487 -0.8 -4.4 4-hydroxybenzoate 3-monooxygenase compare
CCNA_01628 -0.8 -1.1 hypothetical protein compare
CCNA_01910 -0.8 -3.0 ABC transporter substrate-binding protein compare
CCNA_01875 -0.8 -4.4 acyl-CoA dehydrogenase, short-chain specific compare
CCNA_03882 -0.8 -1.0 phage gp6-like head-tail connector protein compare
CCNA_03273 -0.8 -4.4 hypothetical protein compare
CCNA_02375 -0.8 -2.9 hypothetical protein compare
CCNA_02488 -0.8 -3.4 acetate/3-ketoacid CoA transferase, subunit A compare
CCNA_00264 -0.8 -3.2 C4-dicarboxylate transport protein compare
CCNA_02468 -0.8 -2.9 hypothetical protein compare
CCNA_03136 -0.8 -2.3 flagellar export protein FliJ compare
CCNA_03238 -0.8 -5.2 ABC-type spermidine/putrescine transport system, permease component II compare
CCNA_01837 -0.8 -3.0 transposase, IS30 family compare
CCNA_02481 -0.8 -5.6 TonB-dependent receptor compare
CCNA_01214 -0.7 -2.0 YjgP/YjgQ family membrane permease compare
CCNA_02631 -0.7 -1.2 P-loop NTPase-related protein compare
CCNA_01061 -0.7 -2.4 type I secretion adaptor protein RsaE compare
CCNA_02469 -0.7 -4.4 protein hipA compare
CCNA_00668 -0.7 -3.0 capsular polysaccharide biosynthesis protein compare
CCNA_01876 -0.7 -4.1 oxidoreductase compare
CCNA_00518 -0.7 -1.6 LSU ribosomal protein L25P compare
CCNA_00197 -0.7 -0.9 LSU ribosomal protein L19P compare
CCNA_01622 -0.7 -4.0 Rsh ppGpp hydrolase-synthetase compare
CCNA_03748 -0.7 -2.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
CCNA_03138 -0.7 -3.4 peroxidase/catalase katG compare
CCNA_01909 -0.7 -4.5 ABC transporter substrate-binding protein compare
CCNA_03705 -0.7 -1.2 hypothetical protein compare
CCNA_01795 -0.7 -1.6 phosphopyruvate hydratase compare
CCNA_03101 -0.7 -1.5 site-specific tyrosine recombinase XerD compare
CCNA_01449 -0.7 -2.3 fructose-1,6-bisphosphatase, FIG superfamily compare
CCNA_01086 -0.7 -3.7 GTP-binding protein lepA compare
CCNA_00954 -0.7 -2.6 AAA-family response regulator flbD compare
CCNA_01242 -0.7 -3.5 amino acid permease compare
CCNA_02892 -0.7 -0.8 hypothetical protein compare
CCNA_02115 -0.7 -4.2 secreted pectate lyase-family protein compare
CCNA_03895 -0.7 -3.3 hypothetical protein compare
CCNA_01880 -0.7 -3.9 3-ketoacyl-(acyl-carrier-protein) reductase FabG compare
CCNA_02109 -0.7 -3.5 thiamine biosynthesis protein thiC compare
CCNA_03588 -0.7 -4.0 two-component sensor histidine kinase PhyK compare
CCNA_01475 -0.7 -2.7 OmpW family outer membrane cation channel compare
CCNA_01120 -0.7 -1.5 hypothetical protein compare
CCNA_01869 -0.7 -4.6 TonB-dependent receptor compare
CCNA_02479 -0.7 -4.4 aryl-alcohol dehydrogenase compare
CCNA_02788 -0.7 -1.8 Xre-family transcriptional regulator compare
CCNA_01873 -0.7 -1.6 magnesium and cobalt transport protein corA compare
CCNA_03649 -0.6 -3.5 Ser/Thr kinase-related phosphotransferase compare
CCNA_01466 -0.6 -2.5 hypothetical protein compare
CCNA_03312 -0.6 -1.9 hypothetical protein compare
CCNA_00190 -0.6 -1.3 acyl-CoA hydrolase compare
CCNA_01883 -0.6 -3.6 acyl-CoA dehydrogenase compare
CCNA_02478 -0.6 -3.7 dihydrolipoamide acetyltransferase component of acetoin cleaving system compare
CCNA_03542 -0.6 -2.3 hypothetical protein compare
CCNA_00628 -0.6 -2.9 chemotaxis protein cheY compare
CCNA_02232 -0.6 -4.7 TonB-dependent receptor compare
CCNA_01784 -0.6 -1.2 hypothetical protein compare
CCNA_03945 -0.6 -2.1 hypothetical protein compare
CCNA_01472 -0.6 -3.1 cation pump-linked membrane protein fixH compare
CCNA_02778 -0.6 -2.5 hypothetical protein compare
CCNA_01119 -0.6 -2.6 hypothetical protein compare
CCNA_02218 -0.6 -2.1 DnaJ-like protein djlA compare
CCNA_02317 -0.6 -1.6 hypothetical protein compare
CCNA_00573 -0.6 -5.0 TonB-dependent receptor compare
CCNA_00143 -0.6 -2.9 ribosomal RNA small subunit methyltransferase I compare
CCNA_03353 -0.6 -3.8 metallophosphatase domain protein compare
CCNA_00816 -0.6 -1.9 hypothetical protein compare
CCNA_03538 -0.6 -2.3 NADH-ubiquinone oxidoreductase compare
CCNA_02532 -0.6 -1.7 hypothetical protein compare
CCNA_03940 -0.6 -1.2 hypothetical protein compare
CCNA_01171 -0.6 -3.0 histidine phosphotransferase ShpA compare
CCNA_01510 -0.6 -2.5 hypothetical protein compare
CCNA_02377 -0.6 -2.6 hypothetical protein compare
CCNA_02497 -0.6 -4.3 hypothetical protein compare
CCNA_00642 -0.6 -2.7 hypothetical protein compare
CCNA_00670 -0.6 -1.4 ABC-type polysaccharide/polyol phosphate transport system, ATPase component compare
CCNA_02040 -0.6 -1.0 phosphoserine phosphatase compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 Δfur in stress experiments

For stress Dimethyl Sulfoxide across organisms