Experiment set1IT034 for Caulobacter crescentus NA1000 Δfur

Compare to:

PYE with Dimethyl Sulfoxide 0.4 %

200 most detrimental genes:

  gene name fitness t score description  
CCNA_00761 +1.5 1.9 hypothetical protein compare
CCNA_00028 +1.2 10.8 TonB-dependent receptor compare
CCNA_03931 +1.1 1.2 hypothetical protein compare
CCNA_00027 +1.1 9.0 2OG-Fe(II) oxygenase compare
CCNA_01771 +1.1 3.3 hypothetical protein compare
CCNA_01814 +1.0 1.3 nitrogen regulation protein ntrB compare
CCNA_03927 +1.0 1.2 hypothetical protein compare
CCNA_01420 +0.9 3.3 NrdR family transcriptional regulator compare
CCNA_01059 +0.9 7.1 S-layer protein rsaA compare
CCNA_03961 +0.9 2.3 hypothetical protein compare
CCNA_00063 +0.8 1.0 MviN-family integral membrane protein compare
CCNA_01790 +0.8 2.2 protein translocase subunit secG compare
CCNA_03080 +0.8 2.5 antitoxin protein parD-4 compare
CCNA_00852 +0.8 3.8 TetR family transcriptional regulator compare
CCNA_03496 +0.8 0.7 hypothetical protein compare
CCNA_01754 +0.8 1.0 transglycosylase associated protein compare
CCNA_01375 +0.7 1.5 lactoylglutathione lyase compare
CCNA_01712 +0.7 3.5 CopY/TcrY family transcriptional repressor compare
CCNA_00896 +0.7 1.5 hypothetical protein compare
CCNA_00675 +0.7 3.9 VapC-like PIN domain ribonuclease compare
CCNA_00749 +0.7 0.9 ferrous iron transport protein B compare
CCNA_03710 +0.7 2.6 nitrogen regulatory IIA protein compare
CCNA_02277 +0.7 5.4 TonB-dependent outer membrane channel compare
CCNA_00147 +0.7 1.4 hypothetical protein compare
CCNA_R0033 +0.7 1.8 tRNA-Asn compare
CCNA_01276 +0.6 2.4 cytochrome c5 compare
CCNA_01613 +0.6 1.1 rod shape-determining protein MreC compare
CCNA_00769 +0.6 3.9 TetR family transcriptional regulator compare
CCNA_00924 +0.6 2.6 MarR/EmrR family transcriptional regulator compare
CCNA_02265 +0.6 3.3 peptide methionine sulfoxide reductase msrB compare
CCNA_02103 +0.6 2.3 hypothetical protein compare
CCNA_01373 +0.6 4.6 hypothetical protein compare
CCNA_02619 +0.6 5.0 stomatin/prohibitin-related protein compare
CCNA_01005 +0.6 4.0 flagellar basal-body rod protein flgC compare
CCNA_01949 +0.6 2.8 bactofilin A BacA compare
CCNA_01405 +0.6 4.3 GIY-YIG domain protein compare
CCNA_03274 +0.6 0.9 hypothetical protein compare
CCNA_03105 +0.6 3.8 DnaJ domain protein compare
CCNA_01751 +0.5 2.3 aminodeoxychorismate lyase compare
CCNA_03979 +0.5 2.1 hypothetical protein compare
CCNA_01974 +0.5 3.1 anthranilate synthase component II/para-aminobenzoate synthase glutamine amidotransferase component II compare
CCNA_01816 +0.5 3.9 nitrogen regulation protein ntrY compare
CCNA_02644 +0.5 1.3 cell division protein FtsL compare
CCNA_01993 +0.5 3.1 membrane endopeptidase MmpA compare
CCNA_03635 +0.5 1.7 hypothetical protein compare
CCNA_00966 +0.5 1.2 pyridoxamine 5'-phosphate oxidase compare
CCNA_00011 +0.5 3.0 chaperone protein DnaJ compare
CCNA_02318 +0.5 0.9 hypothetical protein compare
CCNA_03044 +0.5 3.4 CpaC-related secretion pathway protein compare
CCNA_01393 +0.5 4.1 soluble lytic murein transglycosylase compare
CCNA_00848 +0.5 1.2 leucine-responsive regulatory protein compare
CCNA_01596 +0.5 1.4 DNA helicase II compare
CCNA_01347 +0.5 3.1 hypothetical protein compare
CCNA_02866 +0.5 2.9 hypothetical protein compare
CCNA_01964 +0.5 0.8 NADH dehydrogenase compare
CCNA_01619 +0.5 3.0 NYN domain protein compare
CCNA_01948 +0.5 3.9 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_02843 +0.5 2.0 toxin protein parE-3 compare
CCNA_00097 +0.5 1.2 hypothetical protein compare
CCNA_01804 +0.5 2.6 glutathione peroxidase compare
CCNA_00561 +0.5 2.4 conserved hypothetical cytosolic protein compare
CCNA_02350 +0.5 1.4 dimeric ferredoxin-like protein compare
CCNA_03952 +0.5 3.0 hypothetical protein compare
CCNA_01923 +0.5 3.5 ATP-dependent RNA helicase compare
CCNA_00803 +0.5 2.7 chemotaxis protein cheW compare
CCNA_01731 +0.5 2.1 colicin V production protein CvpA compare
CCNA_01821 +0.5 2.3 MazG protein compare
CCNA_02859 +0.5 1.1 hypothetical protein compare
CCNA_00059 +0.5 2.1 oxygen-insensitive NADH nitroreductase compare
CCNA_02257 +0.5 1.8 fliN family protein compare
CCNA_01526 +0.5 2.1 flagellar biosynthesis regulatory protein flaF compare
CCNA_01530 +0.5 3.5 flagellin FljJ compare
CCNA_01931 +0.5 2.7 TetR-family transcriptional regulator compare
CCNA_03707 +0.5 3.4 hypothetical protein compare
CCNA_01333 +0.5 1.5 hypothetical protein compare
CCNA_01608 +0.4 2.6 TetR-family transcriptional regulator compare
CCNA_01252 +0.4 4.0 soluble lytic murein transglycosylase compare
CCNA_01460 +0.4 1.5 hypothetical protein compare
CCNA_01004 +0.4 1.3 flagellar basal-body rod protein FlgB compare
CCNA_00878 +0.4 1.4 ATP-dependent RNA helicase compare
CCNA_02141 +0.4 3.0 flagellar fliL protein compare
CCNA_02036 +0.4 2.1 DNA-binding protein HU compare
CCNA_01531 +0.4 2.6 acetyltransferase compare
CCNA_00225 +0.4 0.6 hypothetical protein compare
CCNA_01295 +0.4 2.3 integral membrane protein compare
CCNA_00056 +0.4 2.4 ribosomal-protein-S18-alanine acetyltransferase compare
CCNA_00562 +0.4 3.0 dihydroorotate dehydrogenase compare
CCNA_01962 +0.4 2.4 leucyl/phenylalanyl-tRNA--protein transferase compare
CCNA_02139 +0.4 2.2 polar flagellum positioning protein pflI compare
CCNA_02270 +0.4 1.8 MarR-family transcriptional regulator compare
CCNA_03031 +0.4 2.1 NlpC/P60 family protein compare
CCNA_02957 +0.4 2.4 ArsR-family transcriptional regulator compare
CCNA_03400 +0.4 2.1 hypothetical protein compare
CCNA_03129 +0.4 3.4 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_02425 +0.4 1.3 non-essential pilus assembly protein compare
CCNA_03287 +0.4 2.0 PadR-family transcriptional regulator compare
CCNA_02243 +0.4 3.6 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_03216 +0.4 1.7 hypothetical protein compare
CCNA_01919 +0.4 2.6 FrnE protein compare
CCNA_03612 +0.4 1.8 HTH XRE-family transcriptional regulator compare
CCNA_01914 +0.4 2.4 16S rRNA m(2)G 1207 methyltransferase RsmC compare
CCNA_03604 +0.4 2.4 hypothetical protein compare
CCNA_02551 +0.4 1.8 hypothetical protein compare
CCNA_02312 +0.4 2.8 TraB superfamily protein compare
CCNA_00762 +0.4 2.3 hypothetical protein compare
CCNA_01811 +0.4 1.8 competence/damage-inducible protein CinA compare
CCNA_01777 +0.4 3.0 hybrid sensor histidine kinase/receiver domain protein compare
CCNA_01763 +0.4 1.9 multifunctional aminopeptidase compare
CCNA_00750 +0.4 2.9 FeaR-family transcriptional regulator compare
CCNA_01629 +0.4 2.6 signal peptidase I compare
CCNA_01954 +0.4 1.8 ribonuclease E compare
CCNA_02179 +0.4 2.8 long-chain fatty acid transport protein precursor compare
CCNA_02860 +0.4 2.9 DnaJ-class molecular chaperone compare
CCNA_02515 +0.4 1.8 TPR repeat/SEL1 family protein compare
CCNA_01529 +0.4 2.6 FlaG superfamily protein compare
CCNA_02817 +0.4 1.1 hypothetical protein compare
CCNA_01929 +0.4 0.9 hypothetical protein compare
CCNA_03854 +0.4 2.2 phosphoribosyl-ATP pyrophosphatase compare
CCNA_01752 +0.4 1.8 YicC-family protein compare
CCNA_01525 +0.4 1.4 flagellar biosynthesis repressor flbT compare
CCNA_00511 +0.4 2.3 carboxymethylenebutenolidase compare
CCNA_01756 +0.4 1.5 hypothetical protein compare
CCNA_03949 +0.4 1.7 hypothetical protein compare
CCNA_00895 +0.4 1.8 hypothetical protein compare
CCNA_03590 +0.4 1.9 anti-sigma factor NepR compare
CCNA_03587 +0.4 1.1 entericidin B-like protein compare
CCNA_01197 +0.4 1.1 hypothetical protein compare
CCNA_01782 +0.4 2.9 polyphosphate kinase 1 compare
CCNA_02324 +0.4 2.9 heat shock protein 33 hsp33 compare
CCNA_01840 +0.4 2.4 MerR-family transcriptional regulator compare
CCNA_01392 +0.4 1.9 glycosyltransferase involved in cell wall biogenesis compare
CCNA_02021 +0.4 2.2 hypothetical protein compare
CCNA_00080 +0.4 1.0 LexA-related transcriptional repressor compare
CCNA_00154 +0.4 2.1 hypothetical protein compare
CCNA_00051 +0.4 2.1 magnesium and cobalt efflux protein CorC compare
CCNA_01581 +0.4 1.2 hypothetical protein compare
CCNA_02096 +0.4 1.2 CusF-family protein compare
CCNA_00161 +0.4 2.3 hypothetical protein compare
CCNA_02379 +0.4 2.0 hypothetical protein compare
CCNA_02134 +0.4 2.7 phosphogluconate dehydratase compare
CCNA_01823 +0.4 0.7 hypothetical protein compare
CCNA_03039 +0.4 2.6 pilus assembly protein CpaD compare
CCNA_02542 +0.4 2.0 hypothetical protein compare
CCNA_02144 +0.4 2.2 flagella basal body P ring formation protein flgA compare
CCNA_03327 +0.4 2.6 hypothetical protein compare
CCNA_02568 +0.4 2.7 LAO/AO transport system kinase compare
CCNA_00168 +0.4 2.6 polysaccharide export protein compare
CCNA_01921 +0.4 0.6 Sdh5 family flavination protein compare
CCNA_01218 +0.4 2.3 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_00527 +0.4 2.6 hypothetical protein compare
CCNA_02731 +0.4 2.2 acetyltransferase compare
CCNA_00707 +0.4 2.8 hypothetical protein compare
CCNA_02124 +0.4 1.5 hypothetical protein compare
CCNA_03933 +0.4 1.3 hypothetical protein compare
CCNA_02245 +0.4 1.8 DnaJ domain protein compare
CCNA_00047 +0.4 2.4 tRNA m7-G46 methyltransferase compare
CCNA_01079 +0.4 1.8 hypothetical protein compare
CCNA_01173 +0.4 2.2 chorismate mutase compare
CCNA_03256 +0.4 1.4 chorismate synthase compare
CCNA_01502 +0.4 2.8 conserved membrane spanning protein compare
CCNA_01217 +0.4 2.8 phosphatidylglycerophosphate synthase compare
CCNA_02961 +0.4 2.7 NeuB-family N-acetylneuraminate synthase compare
CCNA_01219 +0.4 2.5 putative cytosolic protein compare
CCNA_03157 +0.3 2.6 hypothetical protein compare
CCNA_00508 +0.3 2.6 aspartate protease compare
CCNA_01828 +0.3 1.9 hypothetical protein compare
CCNA_03863 +0.3 2.3 hypothetical protein compare
CCNA_00359 +0.3 2.7 SH3 domain-containing cell surface protein compare
CCNA_01245 +0.3 1.8 23S rRNA methyltransferase compare
CCNA_01178 +0.3 1.2 conserved hypothetical protein, DUF934 compare
CCNA_00572 +0.3 0.7 PTS system, N-acetylglucosamine-specific IIBC component compare
CCNA_02187 +0.3 1.5 adapter for ClpXP proteolysis of tmRNA-tagged proteins SspB compare
CCNA_01508 +0.3 2.6 cystine-binding protein compare
CCNA_01434 +0.3 2.1 MerR-family transcriptional regulator compare
CCNA_03526 +0.3 2.0 hypothetical protein compare
CCNA_01745 +0.3 2.1 thioredoxin peroxidase compare
CCNA_01416 +0.3 2.3 3-hydroxyisobutyrate dehydrogenase compare
CCNA_02663 +0.3 0.7 DnaK suppressor protein DksA compare
CCNA_00499 +0.3 1.7 hypothetical protein compare
CCNA_01490 +0.3 2.4 FAD-dependent dehydrogenase compare
CCNA_03064 +0.3 2.5 PadR-family transcriptional regulator compare
CCNA_00693 +0.3 1.4 heat shock protein 15 compare
CCNA_01918 +0.3 2.1 cyclic di-GMP effector protein PopA compare
CCNA_03893 +0.3 1.4 hypothetical protein compare
CCNA_01916 +0.3 2.4 ribonuclease BN compare
CCNA_02030 +0.3 1.1 hypothetical protein compare
CCNA_00889 +0.3 2.1 lumazine-binding domain protein compare
CCNA_00558 +0.3 2.2 methyltransferase compare
CCNA_00450 +0.3 1.9 cheE protein compare
CCNA_00058 +0.3 2.0 hypothetical protein compare
CCNA_00284 +0.3 2.4 pyrimidine 5'-nucleotidase family protein compare
CCNA_01972 +0.3 2.2 anthranilate synthase component I compare
CCNA_01855 +0.3 2.1 iron/manganese superoxide dismutase compare
CCNA_00035 +0.3 2.2 tRNA pseudouridine synthase B compare
CCNA_00162 +0.3 2.3 hypothetical protein compare
CCNA_03929 +0.3 1.0 hypothetical protein compare
CCNA_00449 +0.3 2.1 cheYIII compare
CCNA_00767 +0.3 1.7 hypothetical protein compare
CCNA_02307 +0.3 1.6 cyclohexadienyl dehydrogenase compare
CCNA_02732 +0.3 1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 Δfur in stress experiments

For stress Dimethyl Sulfoxide across organisms