Experiment set1IT033 for Pseudomonas simiae WCS417

Compare to:

2-Deoxy-D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.7 -3.9 3-phosphoglycerate dehydrogenase compare
PS417_04415 -6.5 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18600 -6.1 -4.6 isopropylmalate isomerase compare
PS417_23545 -6.0 -5.8 gamma-glutamyl kinase compare
PS417_18560 -6.0 -12.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23805 -6.0 -8.1 acetolactate synthase 3 regulatory subunit compare
PS417_01855 -5.9 -5.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_01575 -5.7 -9.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23800 -5.5 -18.6 ketol-acid reductoisomerase compare
PS417_25725 -5.5 -18.9 anthranilate synthase component I compare
PS417_27795 -5.4 -2.1 orotate phosphoribosyltransferase compare
PS417_24745 -5.4 -8.2 gamma-glutamyl phosphate reductase compare
PS417_18595 -5.4 -6.6 3-isopropylmalate dehydratase compare
PS417_25720 -5.1 -12.1 anthranilate synthase component II compare
PS417_26740 -5.0 -14.4 homoserine acetyltransferase compare
PS417_00185 -5.0 -8.3 tryptophan synthase subunit beta compare
PS417_02510 -4.9 -4.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_16465 -4.8 -14.4 sirohydrochlorin ferrochelatase compare
PS417_23810 -4.8 -12.4 acetolactate synthase 3 catalytic subunit compare
PS417_07250 -4.7 -10.3 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) conserved
PS417_01565 -4.5 -6.1 imidazole glycerol phosphate synthase compare
PS417_18585 -4.5 -8.8 3-isopropylmalate dehydrogenase compare
PS417_04420 -4.5 -13.0 histidinol dehydrogenase compare
PS417_21035 -4.3 -18.2 multidrug transporter compare
PS417_00180 -4.2 -5.7 tryptophan synthase subunit alpha compare
PS417_26730 -4.2 -2.3 pyrroline-5-carboxylate reductase compare
PS417_07245 -4.2 -6.2 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_27195 -4.1 -2.1 N-acetylglutamate synthase compare
PS417_12290 -4.1 -10.6 sulfite reductase compare
PS417_26745 -4.0 -7.2 methionine biosynthesis protein MetW compare
PS417_02005 -4.0 -19.2 glutamate synthase compare
PS417_07260 -4.0 -15.1 2-deoxy-D-ribonate transporter 2 (from data) compare
PS417_25710 -3.9 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_18530 -3.9 -4.5 O-succinylhomoserine sulfhydrylase compare
PS417_23110 -3.9 -9.3 2-isopropylmalate synthase compare
PS417_01850 -3.7 -9.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_20160 -3.7 -5.4 cysteine synthase compare
PS417_23995 -3.6 -1.9 preprotein translocase subunit SecG compare
PS417_26890 -3.6 -6.4 dihydroxy-acid dehydratase compare
PS417_05595 -3.5 -8.4 ornithine carbamoyltransferase compare
PS417_25715 -3.5 -6.0 anthranilate phosphoribosyltransferase compare
PS417_01580 -3.5 -2.2 imidazole glycerol phosphate synthase compare
PS417_02000 -3.5 -18.2 glutamate synthase compare
PS417_20985 -3.4 -5.8 porin compare
PS417_01560 -3.3 -4.5 imidazoleglycerol-phosphate dehydratase compare
PS417_01605 -3.3 -2.8 phosphoglycerate mutase compare
PS417_07255 -3.2 -8.1 Deoxyribonolactonase (from data) conserved
PS417_02415 -3.1 -9.0 phosphoserine phosphatase compare
PS417_09725 -3.1 -10.3 transporter compare
PS417_07265 -3.0 -17.0 2-deoxy-D-ribonate transporter 1 (from data) compare
PS417_07240 -2.8 -7.4 Transcriptional regulator of deoxyribose catabolism (from data) compare
PS417_08670 -2.8 -8.3 molybdopterin biosynthesis protein B compare
PS417_24155 -2.7 -4.1 ATP-binding protein compare
PS417_14940 -2.7 -4.2 LysR family transcriptional regulator compare
PS417_13975 -2.7 -9.4 CdaR family transcriptional regulator compare
PS417_21395 -2.6 -15.5 radical SAM protein compare
PS417_07640 -2.6 -7.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_04875 -2.5 -3.3 molybdenum cofactor biosynthesis protein MoaE compare
PS417_06375 -2.5 -1.8 deoxycytidine triphosphate deaminase compare
PS417_04595 -2.5 -5.7 cell division protein MraZ compare
PS417_04865 -2.5 -8.4 molybdenum cofactor biosynthesis protein MoaC compare
PS417_13970 -2.4 -13.8 glycerate kinase conserved
PS417_10890 -2.4 -13.9 Deoxyribose 1-dehydrogenase, alpha subunit (from data) compare
PS417_08125 -2.4 -2.4 prephenate dehydratase compare
PS417_21490 -2.3 -12.9 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
PS417_10885 -2.2 -11.8 Deoxyribose 1-dehydrogenase, beta subunit (from data) compare
PS417_04180 -2.1 -5.7 GntR family transcriptional regulator compare
PS417_22520 -2.1 -4.9 histidine kinase compare
PS417_21495 -2.1 -2.8 lipoprotein compare
PS417_27875 -2.1 -10.1 histidine kinase compare
PS417_20610 -2.0 -3.2 hypothetical protein compare
PS417_01570 -2.0 -2.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_22445 -1.9 -5.5 ATP-dependent DNA helicase RuvB compare
PS417_08205 -1.9 -5.8 acetyltransferase compare
PS417_26995 -1.8 -11.5 phosphoserine phosphatase compare
PS417_23770 -1.8 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_20125 -1.7 -5.9 phosphoribosylglycinamide formyltransferase compare
PS417_24835 -1.7 -8.0 hypothetical protein compare
PS417_08195 -1.6 -9.2 hypothetical protein compare
PS417_16990 -1.6 -9.7 acyl-CoA dehydrogenase compare
PS417_04410 -1.6 -2.4 hypothetical protein compare
PS417_27435 -1.6 -8.4 polyphosphate kinase compare
PS417_26040 -1.6 -5.5 malate synthase compare
PS417_08225 -1.6 -5.5 acetolactate synthase compare
PS417_08200 -1.5 -4.4 hypothetical protein compare
PS417_08730 -1.5 -2.6 cytochrome C compare
PS417_16570 -1.5 -8.9 isocitrate lyase compare
PS417_01710 -1.4 -6.8 histidine utilization repressor compare
PS417_12310 -1.4 -9.1 methionine synthase compare
PS417_08230 -1.4 -2.8 lipopolysaccharide biosynthesis protein RfbH compare
PS417_21750 -1.4 -11.5 acetyl-CoA synthetase compare
PS417_08675 -1.3 -7.1 molybdenum cofactor biosynthesis protein MoaA compare
PS417_27835 -1.3 -5.4 endoribonuclease compare
PS417_22375 -1.3 -1.6 cold-shock protein compare
PS417_26990 -1.3 -1.9 RNA pyrophosphohydrolase compare
PS417_21030 -1.3 -5.7 GntR family transcriptional regulator compare
PS417_11845 -1.3 -5.6 RpiR family transcriptional regulator compare
PS417_20665 -1.3 -5.9 hypothetical protein compare
PS417_12855 -1.3 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_16490 -1.2 -1.8 cell division protein FtsK compare
PS417_22450 -1.2 -1.3 ATP-dependent DNA helicase RuvA compare
PS417_08155 -1.2 -3.3 integration host factor subunit beta compare
PS417_17505 -1.1 -3.2 LuxR family transcriptional regulator compare
PS417_13800 -1.1 -2.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_27870 -1.1 -4.2 ATP-dependent DNA helicase RecG compare
PS417_21705 -1.1 -4.7 arginine N-succinyltransferase compare
PS417_26985 -1.1 -4.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_17455 -1.1 -3.6 cytochrome C compare
PS417_27305 -1.0 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PS417_24370 -1.0 -1.3 (2Fe-2S)-binding protein compare
PS417_17415 -1.0 -5.1 histidine kinase compare
PS417_27035 -1.0 -4.3 FAD-linked oxidase compare
PS417_06200 -1.0 -4.4 protein-PII uridylyltransferase compare
PS417_07875 -1.0 -1.3 hypothetical protein compare
PS417_08220 -1.0 -0.9 epimerase compare
PS417_09915 -1.0 -1.4 hypothetical protein compare
PS417_17705 -0.9 -2.9 LacI family transcriptional regulator compare
PS417_26510 -0.9 -6.0 5,10-methylenetetrahydrofolate reductase compare
PS417_25940 -0.9 -4.6 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_17495 -0.9 -6.1 multidrug ABC transporter permease compare
PS417_25930 -0.9 -4.8 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_20620 -0.9 -5.2 glycosyl transferase family 2 compare
PS417_09705 -0.9 -3.8 hypothetical protein compare
PS417_17420 -0.9 -5.1 ethanol oxidation regulatory protein ercA (from data) compare
PS417_27605 -0.9 -4.0 hypothetical protein compare
PS417_05840 -0.9 -3.0 LuxR family transcriptional regulator compare
PS417_17435 -0.8 -6.6 dehydrogenase compare
PS417_28510 -0.8 -4.9 chromosome partitioning protein compare
PS417_09710 -0.8 -3.0 dehydrogenase compare
PS417_07615 -0.8 -4.0 TetR family transcriptional regulator compare
PS417_04585 -0.8 -1.7 hypothetical protein compare
PS417_17425 -0.8 -4.1 hypothetical protein compare
PS417_09325 -0.8 -3.3 peptidase S41 compare
PS417_23170 -0.8 -2.1 FeS assembly protein IscX compare
PS417_20140 -0.8 -2.8 nucleoprotein/polynucleotide-associated enzyme compare
PS417_20340 -0.8 -1.9 hypothetical protein compare
PS417_17480 -0.8 -4.3 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_21125 -0.8 -4.4 phosphoadenosine phosphosulfate reductase compare
PS417_19335 -0.8 -2.7 isochorismatase compare
PS417_23375 -0.8 -1.5 cytochrome C oxidase compare
PS417_18055 -0.8 -1.7 general secretion pathway protein GspK compare
PS417_27585 -0.8 -2.4 diaminopimelate epimerase compare
PS417_22115 -0.8 -2.3 transcriptional regulator compare
PS417_10880 -0.8 -4.1 cytochrome c component of deoxyribose dehydrogenase (from data) compare
PS417_06895 -0.7 -2.4 DNA-binding protein compare
PS417_10515 -0.7 -3.7 acetyl-CoA acetyltransferase compare
PS417_13295 -0.7 -4.0 TetR family transcriptional regulator compare
PS417_08245 -0.7 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_28220 -0.7 -1.6 LysR family transcriptional regulator compare
PS417_22670 -0.7 -3.4 AraC family transcriptional regulator compare
PS417_11930 -0.7 -4.2 hypothetical protein compare
PS417_25920 -0.7 -4.2 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_19965 -0.7 -5.5 histidine kinase compare
PS417_23775 -0.7 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_07560 -0.7 -1.5 universal stress protein UspA compare
PS417_02225 -0.7 -1.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_21655 -0.7 -1.0 aspartate kinase compare
PS417_08410 -0.7 -1.7 hypothetical protein compare
PS417_21000 -0.7 -2.0 CrfX protein compare
PS417_16515 -0.7 -2.1 Clp protease ClpS compare
PS417_17485 -0.7 -3.4 membrane protein compare
PS417_03310 -0.7 -3.4 carbonate dehydratase compare
PS417_16855 -0.7 -1.1 cation:proton antiporter compare
PS417_06100 -0.7 -1.5 SAM-dependent methyltransferase compare
PS417_22385 -0.7 -5.3 quinolinate synthase A compare
PS417_14590 -0.7 -1.4 LysR family transcriptional regulator compare
PS417_24620 -0.7 -2.6 hypothetical protein compare
PS417_00510 -0.6 -1.2 membrane protein compare
PS417_03925 -0.6 -2.7 nicotinate-nucleotide pyrophosphorylase compare
PS417_11400 -0.6 -1.5 phosphoglycerate mutase compare
PS417_02070 -0.6 -1.1 membrane protein compare
PS417_00220 -0.6 -1.5 hypothetical protein compare
PS417_01995 -0.6 -2.0 hypothetical protein compare
PS417_23900 -0.6 -4.0 poly(A) polymerase compare
PS417_01185 -0.6 -3.2 ribosomal protein S6 modification protein compare
PS417_12840 -0.6 -2.5 TetR family transcriptional regulator compare
PS417_09720 -0.6 -1.6 methyltransferase compare
PS417_23250 -0.6 -4.1 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_00085 -0.6 -2.1 16S rRNA methyltransferase compare
PS417_15540 -0.6 -1.2 NUDIX hydrolase compare
PS417_09575 -0.6 -2.1 glutathione S-transferase compare
PS417_14200 -0.6 -2.2 hypothetical protein compare
PS417_06245 -0.6 -1.7 zinc metallopeptidase RseP compare
PS417_20855 -0.6 -1.2 hypothetical protein compare
PS417_07175 -0.6 -2.3 beta-lactamase compare
PS417_21285 -0.6 -2.1 hypothetical protein compare
PS417_07470 -0.6 -1.3 hypothetical protein compare
PS417_25730 -0.6 -1.9 phosphoglycolate phosphatase compare
PS417_21870 -0.6 -2.3 glycerophosphodiester phosphodiesterase compare
PS417_25790 -0.6 -3.3 aminoglycoside phosphotransferase compare
PS417_07170 -0.6 -3.8 hypothetical protein compare
PS417_24765 -0.6 -2.4 membrane protein compare
PS417_00405 -0.6 -3.0 DNA polymerase I compare
PS417_06710 -0.6 -1.5 beta-ketoadipyl CoA thiolase compare
PS417_11440 -0.6 -1.6 hypothetical protein compare
PS417_17500 -0.6 -2.4 sulfurtransferase compare
PS417_25825 -0.6 -2.7 sulfurtransferase compare
PS417_15775 -0.6 -1.9 short-chain dehydrogenase compare
PS417_24615 -0.6 -1.1 hypothetical protein compare
PS417_10220 -0.6 -3.2 hypothetical protein compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Pseudomonas simiae WCS417

For carbon source 2-Deoxy-D-Ribose across organisms