Experiment set1IT033 for Pseudomonas simiae WCS417

Compare to:

2-Deoxy-D-Ribose carbon source

200 most detrimental genes:

  gene name fitness t score description  
PS417_03560 +2.1 6.9 GTP-binding protein compare
PS417_19825 +2.0 15.5 ATPase AAA compare
PS417_16370 +1.9 11.5 chemotaxis protein CheY compare
PS417_10720 +1.7 5.5 chemotaxis protein CheY compare
PS417_27690 +1.3 5.1 XRE family transcriptional regulator compare
PS417_19805 +1.3 6.2 flagellar M-ring protein FliF compare
PS417_21565 +1.2 4.5 flagellar basal body rod protein FlgC compare
PS417_03145 +1.2 2.3 acetyl-CoA acetyltransferase compare
PS417_28265 +1.2 1.9 pyridoxamine kinase compare
PS417_19560 +1.0 7.5 amino acid ABC transporter substrate-binding protein compare
PS417_23855 +1.0 3.0 ABC transporter substrate-binding protein compare
PS417_19695 +1.0 6.9 flagellar biosynthesis sigma factor compare
PS417_19765 +0.9 5.4 flagellar hook-length control protein compare
PS417_19885 +0.9 2.9 flagellar basal body rod protein FlgG compare
PS417_24885 +0.9 3.3 transcriptional regulator compare
PS417_19725 +0.9 4.8 flagellar biosynthesis protein FlhB compare
PS417_18390 +0.9 6.6 LacI family transcriptional regulator compare
PS417_21570 +0.9 5.9 flagellar basal body rod protein FlgB compare
PS417_19740 +0.9 4.5 flagellar biosynthesis protein flip compare
PS417_19745 +0.9 5.3 flagellar assembly protein FliO compare
PS417_19735 +0.8 5.2 flagellar biosynthesis protein FliQ compare
PS417_19795 +0.8 5.8 flagellar assembly protein FliH compare
PS417_02280 +0.8 2.8 GlcNAc-PI de-N-acetylase compare
PS417_19620 +0.8 1.4 hypothetical protein compare
PS417_16565 +0.8 3.5 secretin compare
PS417_00845 +0.8 1.6 transcriptional regulator compare
PS417_03725 +0.8 2.2 acyltransferase compare
PS417_19880 +0.8 5.8 flagellar basal body L-ring protein compare
PS417_21630 +0.8 2.9 magnesium transporter compare
PS417_21585 +0.8 4.4 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_21555 +0.8 5.6 flagellar hook protein FlgE compare
PS417_09220 +0.7 1.8 cupin compare
PS417_19730 +0.7 2.5 flagellar biosynthesis protein FliR compare
PS417_09635 +0.7 5.1 mannose-1-phosphate guanylyltransferase compare
PS417_13090 +0.7 2.7 dienelactone hydrolase compare
PS417_27135 +0.7 1.0 glutamine synthetase compare
PS417_08025 +0.7 1.9 acetylornithine aminotransferase compare
PS417_23205 +0.7 1.3 transcriptional regulator compare
PS417_19710 +0.7 5.0 flagellar biosynthesis protein FlhA compare
PS417_19835 +0.7 2.0 flagellar biosynthesis protein FliS compare
PS417_22690 +0.7 2.5 phosphogluconate dehydratase compare
PS417_19785 +0.7 1.3 flagellar biogenesis protein compare
PS417_19870 +0.7 2.0 flagellar rod assembly protein FlgJ compare
PS417_15480 +0.6 1.5 ABC transporter substrate-binding protein compare
PS417_07985 +0.6 1.5 AbrB family transcriptional regulator compare
PS417_12735 +0.6 1.5 peroxidase compare
PS417_06865 +0.6 2.2 transporter compare
PS417_16160 +0.6 1.6 ABC transporter substrate-binding protein compare
PS417_21850 +0.6 1.2 LysR family transcriptional regulator compare
PS417_22315 +0.6 2.5 DNA-3-methyladenine glycosylase compare
PS417_00195 +0.6 1.8 hypothetical protein compare
PS417_18690 +0.6 1.6 aromatic amino acid aminotransferase compare
PS417_09245 +0.6 1.5 recombinase RdgC compare
PS417_03525 +0.6 1.1 hypothetical protein compare
PS417_10900 +0.6 3.6 ABC transporter substrate-binding protein compare
PS417_26760 +0.6 4.7 oxidase compare
PS417_10910 +0.6 2.2 FAD-dependent oxidoreductase compare
PS417_15215 +0.6 1.5 protein activator of alkane oxidation PraA compare
PS417_21480 +0.6 1.0 23S rRNA pseudouridylate synthase compare
PS417_06745 +0.6 1.9 polysaccharide deacetylase compare
PS417_26335 +0.6 2.2 BetI family transcriptional regulator compare
PS417_19865 +0.6 4.2 flagellar hook protein FlgK compare
PS417_14235 +0.6 1.7 hypothetical protein compare
PS417_22875 +0.6 1.7 hypothetical protein compare
PS417_19755 +0.6 1.4 flagellar motor switch protein FliM compare
PS417_13940 +0.6 1.5 racemase compare
PS417_17945 +0.6 0.8 hypothetical protein compare
PS417_06970 +0.6 1.2 LysR family transcriptional regulator compare
PS417_22810 +0.6 1.9 DNA base-flipping protein YbaZ compare
PS417_09605 +0.6 1.6 glycosyl transferase compare
PS417_03455 +0.6 1.3 type III secretion protein compare
PS417_21405 +0.6 3.1 hydrolase TatD compare
PS417_00975 +0.5 1.2 hypothetical protein compare
PS417_19820 +0.5 2.4 histidine kinase compare
PS417_10405 +0.5 0.8 filamentous hemagglutinin compare
PS417_09210 +0.5 0.6 TetR family transcriptional regulator compare
PS417_27290 +0.5 1.2 hypothetical protein compare
PS417_19830 +0.5 2.1 flagellar assembly protein FliT compare
PS417_19285 +0.5 1.3 ankyrin compare
PS417_24430 +0.5 1.4 3-dehydroquinate dehydratase compare
PS417_05500 +0.5 1.6 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_09865 +0.5 1.2 hypothetical protein compare
PS417_24650 +0.5 1.5 membrane protein compare
PS417_06635 +0.5 1.0 ferredoxin compare
PS417_12035 +0.5 1.2 dihydroxyacetone kinase compare
PS417_06845 +0.5 0.8 lipoprotein compare
PS417_12110 +0.5 1.3 ATP-binding protein compare
PS417_03200 +0.5 2.3 ArsR family transcriptional regulator compare
PS417_28450 +0.5 1.5 XRE family transcriptional regulator compare
PS417_17590 +0.5 1.8 ABC transporter substrate-binding protein compare
PS417_17935 +0.5 2.0 endoribonuclease L-PSP compare
PS417_19800 +0.5 1.9 flagellar motor switch protein FliG compare
PS417_19095 +0.5 1.1 hypothetical protein compare
PS417_10895 +0.5 3.2 AMP-dependent synthetase compare
PS417_15495 +0.5 1.3 FAD-dependent oxidoreductase compare
PS417_25905 +0.5 1.8 AsnC family transcriptional regulator compare
PS417_06335 +0.5 1.5 S-formylglutathione hydrolase compare
PS417_08185 +0.5 2.2 glycosyl transferase compare
PS417_23460 +0.5 1.5 LysR family transcriptional regulator compare
PS417_09640 +0.5 2.9 capsular biosynthesis protein compare
PS417_03920 +0.5 1.9 dephospho-CoA kinase compare
PS417_01400 +0.5 1.8 hypothetical protein compare
PS417_09825 +0.5 2.5 hypothetical protein compare
PS417_18475 +0.5 1.6 Pyrrolidone-carboxylate peptidase compare
PS417_12525 +0.5 2.5 hypothetical protein compare
PS417_22300 +0.5 1.2 LTXXQ domain protein compare
PS417_06960 +0.5 2.5 membrane protein compare
PS417_27940 +0.5 1.0 type VI secretion protein compare
PS417_05035 +0.5 1.4 hypothetical protein compare
PS417_27475 +0.5 1.6 membrane protein compare
PS417_20650 +0.5 3.4 hypothetical protein compare
PS417_13445 +0.4 1.0 D-aminopeptidase compare
PS417_11380 +0.4 1.3 peptidylprolyl isomerase compare
PS417_13770 +0.4 1.9 major facilitator transporter compare
PS417_14065 +0.4 2.5 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_24235 +0.4 2.1 hypothetical protein compare
PS417_04705 +0.4 1.6 hypothetical protein compare
PS417_02740 +0.4 1.5 LysR family transcriptional regulator compare
PS417_10985 +0.4 0.7 NADH:flavin oxidoreductase compare
PS417_09420 +0.4 1.1 LysR family transcriptional regulator compare
PS417_27635 +0.4 1.8 magnesium chelatase compare
PS417_00705 +0.4 1.3 MarR family transcriptional regulator compare
PS417_16885 +0.4 1.6 hypothetical protein compare
PS417_20880 +0.4 1.5 GntR family transcriptional regulator compare
PS417_17965 +0.4 1.8 LysR family transcriptional regulator compare
PS417_09620 +0.4 2.9 lipopolysaccharide biosynthesis protein compare
PS417_18040 +0.4 1.0 general secretion pathway protein GspN compare
PS417_27800 +0.4 2.6 exodeoxyribonuclease III compare
PS417_24895 +0.4 1.0 hypothetical protein compare
PS417_11760 +0.4 1.4 Fis family transcriptional regulator compare
PS417_26275 +0.4 1.4 glycine/betaine ABC transporter substrate-binding protein compare
PS417_22660 +0.4 2.0 hypothetical protein compare
PS417_03475 +0.4 1.2 type III secretion protein compare
PS417_16475 +0.4 2.0 camphor resistance protein CrcB compare
PS417_10925 +0.4 3.2 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
PS417_27155 +0.4 1.0 aliphatic sulfonates transport ATP-binding subunit compare
PS417_08435 +0.4 0.8 pilus assembly protein PilZ compare
PS417_27315 +0.4 0.9 hypothetical protein compare
PS417_10905 +0.4 3.0 hypothetical protein compare
PS417_02435 +0.4 2.2 flagellar motor protein MotA compare
PS417_09625 +0.4 1.6 sugar ABC transporter substrate-binding protein compare
PS417_12655 +0.4 2.1 methionine aminopeptidase compare
PS417_27245 +0.4 2.7 aminotransferase DegT compare
PS417_22705 +0.4 1.3 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_08985 +0.4 2.0 histidine kinase compare
PS417_12460 +0.4 1.5 hypothetical protein compare
PS417_06125 +0.4 1.8 hypothetical protein compare
PS417_26695 +0.4 0.7 uracil phosphoribosyltransferase compare
PS417_24535 +0.4 0.9 membrane protein compare
PS417_00455 +0.4 0.8 hypothetical protein compare
PS417_06280 +0.4 1.3 ribonuclease HII compare
PS417_10675 +0.4 0.6 TetR family transcriptional regulator compare
PS417_00450 +0.4 2.3 chemotaxis protein CheY compare
PS417_01645 +0.4 1.3 cupin compare
PS417_05140 +0.4 1.3 dipicolinate synthase compare
PS417_04800 +0.4 1.6 alginate O-acetyltransferase compare
PS417_01195 +0.4 1.4 RNA-binding protein S4 compare
PS417_27485 +0.4 2.0 hypothetical protein compare
PS417_13780 +0.4 1.8 integrase compare
PS417_23050 +0.4 1.6 trehalose PTS system, EII-BC components TreB (from data) compare
PS417_03260 +0.4 0.8 5S ribosomal RNA compare
PS417_10915 +0.4 2.9 ornithine cyclodeaminase compare
PS417_13730 +0.4 1.3 hypothetical protein compare
PS417_04435 +0.4 3.4 uracil phosphoribosyltransferase compare
PS417_04170 +0.4 1.5 stringent starvation protein A compare
PS417_23105 +0.4 1.0 hypothetical protein compare
PS417_12725 +0.4 2.2 AraC family transcriptional regulator compare
PS417_15820 +0.4 0.9 universal stress protein UspA compare
PS417_10245 +0.4 0.7 hypothetical protein compare
PS417_26550 +0.4 1.5 ABC transporter compare
PS417_16215 +0.4 2.1 ABC transporter substrate-binding protein compare
PS417_05820 +0.4 1.1 recombinase RecX compare
PS417_16100 +0.4 1.6 antibiotic biosynthesis monooxygenase compare
PS417_24310 +0.4 1.4 ankyrin compare
PS417_09585 +0.4 2.3 acetyltransferase compare
PS417_10390 +0.4 1.1 RNA polymerase subunit sigma24 compare
PS417_12260 +0.4 1.7 hypothetical protein compare
PS417_19975 +0.4 1.2 hypothetical protein compare
PS417_19685 +0.4 2.1 protein phosphatase compare
PS417_19930 +0.4 1.4 DNA methyltransferase compare
PS417_09615 +0.4 1.7 glycosyl transferase family 1 compare
PS417_27065 +0.4 1.8 hypothetical protein compare
PS417_18930 +0.4 0.9 restriction endonuclease subunit S compare
PS417_20540 +0.4 2.1 multidrug ABC transporter ATP-binding protein compare
PS417_23150 +0.4 1.5 Cro/Cl family transcriptional regulator compare
PS417_14905 +0.4 1.1 C4-dicarboxylate ABC transporter compare
PS417_05685 +0.4 2.5 hypothetical protein compare
PS417_01750 +0.4 1.7 histidine ammonia-lyase compare
PS417_19790 +0.4 0.9 ATP synthase compare
PS417_01210 +0.4 2.4 hypothetical protein compare
PS417_26115 +0.4 2.3 glutamine ABC transporter ATP-binding protein compare
PS417_07010 +0.4 1.1 pseudouridine synthase compare
PS417_08425 +0.4 2.1 acetyltransferase compare
PS417_21560 +0.3 2.1 flagellar basal body rod modification protein FlgD compare
PS417_11395 +0.3 1.8 hypothetical protein compare
PS417_27715 +0.3 1.1 Fe-S oxidoreductase compare
PS417_13760 +0.3 1.8 transcriptional regulator compare
PS417_09610 +0.3 1.9 beta-xylosidase compare
PS417_26125 +0.3 0.8 glutathione S-transferase compare
PS417_27295 +0.3 1.7 hypothetical protein compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Pseudomonas simiae WCS417

For carbon source 2-Deoxy-D-Ribose across organisms