Experiment set1IT033 for Variovorax sp. OAS795

Compare to:

L-Glutamic acid monopotassium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS16595 -8.1 -5.6 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS01565 -7.4 -8.8 DNA starvation/stationary phase protection protein compare
ABID97_RS15380 -7.1 -10.8 nitrite/sulfite reductase compare
ABID97_RS15375 -6.7 -6.1 DUF934 domain-containing protein compare
ABID97_RS20615 -6.3 -6.8 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS16600 -5.7 -7.8 CysB family HTH-type transcriptional regulator compare
ABID97_RS02510 -5.0 -27.1 NADP-dependent malic enzyme compare
ABID97_RS05260 -4.9 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS08425 -4.4 -4.2 tryptophan synthase subunit alpha compare
ABID97_RS05250 -4.3 -7.8 anthranilate synthase component I compare
ABID97_RS15370 -4.3 -10.3 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS15365 -4.1 -5.4 sulfate adenylyltransferase subunit CysD compare
ABID97_RS16535 -4.0 -8.6 arginine/lysine/ornithine decarboxylase compare
ABID97_RS06345 -4.0 -2.7 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS13860 -4.0 -8.2 hypothetical protein compare
ABID97_RS06575 -3.9 -6.3 trehalose-phosphatase compare
ABID97_RS07775 -3.9 -4.8 phosphoribosylglycinamide formyltransferase compare
ABID97_RS02600 -3.9 -2.7 homoserine O-acetyltransferase compare
ABID97_RS13990 -3.8 -2.7 amino acid aminotransferase compare
ABID97_RS25015 -3.7 -4.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS09180 -3.7 -5.6 DNA polymerase I compare
ABID97_RS05275 -3.5 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS12180 -3.5 -2.4 hypothetical protein compare
ABID97_RS07405 -3.5 -15.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS07000 -3.4 -11.2 threonine ammonia-lyase, biosynthetic compare
ABID97_RS23425 -3.3 -3.2 tRNA-Pro compare
ABID97_RS15360 -3.3 -5.8 GTP-binding protein compare
ABID97_RS07430 -3.1 -11.6 pantoate--beta-alanine ligase compare
ABID97_RS23455 -3.1 -3.7 hypothetical protein compare
ABID97_RS27720 -2.9 -2.7 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS05280 -2.9 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS05755 -2.8 -2.7 glycosyltransferase compare
ABID97_RS21150 -2.8 -11.9 FAD-dependent oxidoreductase compare
ABID97_RS03800 -2.7 -2.6 O-antigen ligase family protein compare
ABID97_RS23450 -2.7 -5.1 MBOAT family protein compare
ABID97_RS06460 -2.6 -1.8 sigma 54-interacting transcriptional regulator compare
ABID97_RS05765 -2.6 -2.5 UDP-glucose 4-epimerase GalE compare
ABID97_RS14160 -2.6 -7.5 cell division protein ZapE compare
ABID97_RS17635 -2.5 -4.9 presqualene diphosphate synthase HpnD compare
ABID97_RS06450 -2.5 -2.4 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS07435 -2.5 -7.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS06160 -2.4 -9.1 GTP-binding protein compare
ABID97_RS10885 -2.4 -4.1 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS10305 -2.4 -1.8 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS24170 -2.4 -6.8 ATP-binding protein compare
ABID97_RS15465 -2.3 -10.2 sulfate ABC transporter substrate-binding protein compare
ABID97_RS08435 -2.3 -2.1 phosphoribosylanthranilate isomerase compare
ABID97_RS04505 -2.3 -3.0 ferric iron uptake transcriptional regulator compare
ABID97_RS03910 -2.2 -2.1 orotate phosphoribosyltransferase compare
ABID97_RS23440 -2.2 -12.1 A24 family peptidase compare
ABID97_RS10295 -2.2 -2.0 winged helix-turn-helix transcriptional regulator compare
ABID97_RS04500 -2.1 -2.0 HPr(Ser) kinase/phosphatase compare
ABID97_RS08775 -2.1 -2.4 ribosome small subunit-dependent GTPase A compare
ABID97_RS23915 -2.1 -4.2 heme o synthase compare
ABID97_RS03680 -2.1 -5.4 lysophospholipid transporter LplT compare
ABID97_RS03805 -2.1 -1.4 ATP-binding protein compare
ABID97_RS04440 -2.0 -3.9 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta compare
ABID97_RS20610 -2.0 -5.9 DNA-binding protein YbiB compare
ABID97_RS02110 -2.0 -13.0 type IV pilus modification protein PilV compare
ABID97_RS00255 -2.0 -12.7 type IV pilus twitching motility protein PilT compare
ABID97_RS05370 -2.0 -5.8 ATP-binding protein compare
ABID97_RS02120 -1.9 -11.8 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS06520 -1.9 -1.8 SAM-dependent methyltransferase compare
ABID97_RS16785 -1.9 -2.5 transporter compare
ABID97_RS12575 -1.9 -1.6 ATP-grasp domain-containing protein compare
ABID97_RS01650 -1.9 -1.3 orotidine-5'-phosphate decarboxylase compare
ABID97_RS05670 -1.9 -1.8 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS16985 -1.9 -3.7 transcriptional repressor LexA compare
ABID97_RS06600 -1.8 -5.3 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS02125 -1.8 -15.0 PilC/PilY family type IV pilus protein compare
ABID97_RS05925 -1.8 -8.0 LysR substrate-binding domain-containing protein compare
ABID97_RS02135 -1.8 -7.4 GspH/FimT family pseudopilin compare
ABID97_RS12140 -1.8 -6.9 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS08445 -1.8 -8.7 FimV/HubP family polar landmark protein compare
ABID97_RS07630 -1.7 -4.2 cytochrome o ubiquinol oxidase subunit III compare
ABID97_RS02130 -1.7 -9.9 type IV pilin protein compare
ABID97_RS18495 -1.7 -1.5 DUF2889 domain-containing protein compare
ABID97_RS23225 -1.7 -12.1 glutamate synthase-related protein compare
ABID97_RS04480 -1.7 -2.7 magnesium/cobalt transporter CorA compare
ABID97_RS24705 -1.7 -7.0 response regulator compare
ABID97_RS17590 -1.7 -8.3 endopeptidase La compare
ABID97_RS15505 -1.7 -1.1 ATP-binding cassette domain-containing protein compare
ABID97_RS25405 -1.7 -8.6 16S ribosomal RNA compare
ABID97_RS08220 -1.7 -8.4 phosphoenolpyruvate carboxylase compare
ABID97_RS22860 -1.6 -2.4 MurR/RpiR family transcriptional regulator compare
ABID97_RS02115 -1.6 -6.9 PilW family protein compare
ABID97_RS14100 -1.6 -8.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS28600 -1.6 -1.1 aspartate aminotransferase family protein compare
ABID97_RS02140 -1.6 -8.2 sugar transferase compare
ABID97_RS23435 -1.6 -11.1 type II secretion system F family protein compare
ABID97_RS08430 -1.6 -1.8 tryptophan synthase subunit beta compare
ABID97_RS28990 -1.5 -5.6 aspartate 1-decarboxylase compare
ABID97_RS23430 -1.5 -9.6 type IV-A pilus assembly ATPase PilB compare
ABID97_RS22705 -1.5 -7.6 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS23270 -1.5 -5.5 pilus assembly protein PilP compare
ABID97_RS05365 -1.5 -3.3 DUF4390 domain-containing protein compare
ABID97_RS02145 -1.5 -5.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS16690 -1.5 -4.6 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS14105 -1.5 -1.8 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS20905 -1.4 -2.6 hypothetical protein compare
ABID97_RS06415 -1.4 -9.1 sigma-54 dependent transcriptional regulator compare
ABID97_RS13865 -1.4 -3.6 hypothetical protein compare
ABID97_RS00235 -1.4 -7.8 Glu/Leu/Phe/Val dehydrogenase compare
ABID97_RS09680 -1.4 -1.8 hypothetical protein compare
ABID97_RS06175 -1.3 -10.0 STAS domain-containing protein compare
ABID97_RS15480 -1.3 -6.1 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS03915 -1.3 -4.3 DUF4124 domain-containing protein compare
ABID97_RS07615 -1.3 -3.2 ATP-binding protein compare
ABID97_RS19375 -1.3 -4.2 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS02455 -1.3 -3.6 nucleotidyltransferase family protein compare
ABID97_RS08710 -1.3 -5.3 polynucleotide adenylyltransferase PcnB compare
ABID97_RS01840 -1.3 -7.5 DUF1631 family protein compare
ABID97_RS23665 -1.3 -1.9 DNA-directed RNA polymerase subunit omega compare
ABID97_RS01825 -1.3 -8.6 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS20980 -1.3 -1.2 transcriptional repressor compare
ABID97_RS17200 -1.3 -9.6 ribonuclease R compare
ABID97_RS14905 -1.3 -8.0 2-isopropylmalate synthase compare
ABID97_RS14625 -1.3 -3.5 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS16695 -1.3 -9.4 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS10705 -1.3 -3.6 H-NS histone family protein compare
ABID97_RS14890 -1.3 -4.8 acetolactate synthase small subunit compare
ABID97_RS23650 -1.3 -9.2 serine/threonine-protein kinase compare
ABID97_RS24920 -1.2 -1.5 Holliday junction branch migration protein RuvA compare
ABID97_RS02460 -1.2 -9.6 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS15665 -1.2 -6.6 [protein-PII] uridylyltransferase compare
ABID97_RS15495 -1.2 -3.1 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS16470 -1.2 -1.5 translational GTPase TypA compare
ABID97_RS24045 -1.2 -2.4 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS23275 -1.2 -5.9 type 4a pilus biogenesis protein PilO compare
ABID97_RS17970 -1.2 -5.7 protein TolQ compare
ABID97_RS23380 -1.2 -7.0 lytic transglycosylase domain-containing protein compare
ABID97_RS16195 -1.2 -1.8 hypothetical protein compare
ABID97_RS08360 -1.2 -3.8 DUF4845 domain-containing protein compare
ABID97_RS09935 -1.2 -7.5 hypothetical protein compare
ABID97_RS25345 -1.2 -5.7 transporter associated domain-containing protein compare
ABID97_RS10695 -1.2 -4.7 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS15490 -1.2 -4.8 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS02200 -1.2 -9.7 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS23280 -1.2 -5.9 PilN domain-containing protein compare
ABID97_RS15470 -1.2 -2.3 NADPH-dependent FMN reductase compare
ABID97_RS09595 -1.1 -1.4 Arc family DNA-binding protein compare
ABID97_RS07870 -1.1 -7.5 SDR family oxidoreductase compare
ABID97_RS10815 -1.1 -8.2 phosphoenolpyruvate synthase compare
ABID97_RS25525 -1.1 -3.0 LacI family DNA-binding transcriptional regulator compare
ABID97_RS25690 -1.1 -1.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABID97_RS07635 -1.1 -8.1 cytochrome o ubiquinol oxidase subunit I compare
ABID97_RS13750 -1.1 -1.0 hypothetical protein compare
ABID97_RS15995 -1.1 -3.8 PilZ domain-containing protein compare
ABID97_RS14115 -1.1 -3.2 dihydrolipoyl dehydrogenase compare
ABID97_RS23220 -1.1 -1.6 glutamate synthase subunit beta compare
ABID97_RS07610 -1.1 -1.0 response regulator transcription factor compare
ABID97_RS02210 -1.1 -5.3 pilin compare
ABID97_RS01595 -1.1 -4.5 tRNA guanosine(34) transglycosylase Tgt compare
ABID97_RS17850 -1.1 -1.0 tetratricopeptide repeat protein compare
ABID97_RS24690 -1.1 -5.4 methyl-accepting chemotaxis protein compare
ABID97_RS08250 -1.1 -6.2 RluA family pseudouridine synthase compare
ABID97_RS20265 -1.1 -1.7 site-specific tyrosine recombinase XerD compare
ABID97_RS03015 -1.1 -1.4 hotdog fold thioesterase compare
ABID97_RS27985 -1.1 -1.9 amino acid ABC transporter substrate-binding protein compare
ABID97_RS06315 -1.1 -8.6 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS11935 -1.1 -2.0 hypothetical protein compare
ABID97_RS23285 -1.0 -6.4 pilus assembly protein PilM compare
ABID97_RS07500 -1.0 -1.6 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS07805 -1.0 -2.6 50S ribosomal protein L33 compare
ABID97_RS17640 -1.0 -1.8 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS07415 -1.0 -7.2 quinolinate synthase NadA compare
ABID97_RS17665 -1.0 -1.5 DUF1993 domain-containing protein compare
ABID97_RS14260 -1.0 -4.4 FtsH protease activity modulator HflK compare
ABID97_RS18205 -1.0 -2.5 XRE family transcriptional regulator compare
ABID97_RS12850 -1.0 -1.9 ribulose bisphosphate carboxylase small subunit compare
ABID97_RS22940 -1.0 -2.6 single-stranded-DNA-specific exonuclease RecJ compare
ABID97_RS27795 -1.0 -0.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS23185 -1.0 -1.0 ABC transporter ATP-binding protein compare
ABID97_RS17895 -1.0 -3.9 transcriptional regulator NrdR compare
ABID97_RS06390 -1.0 -2.2 carbohydrate kinase family protein compare
ABID97_RS03470 -1.0 -8.5 methionine synthase compare
ABID97_RS21945 -1.0 -2.5 hemolysin family protein compare
ABID97_RS27265 -1.0 -1.4 fumarylacetoacetate hydrolase family protein compare
ABID97_RS03515 -1.0 -3.1 amino acid synthesis family protein compare
ABID97_RS10590 -0.9 -6.2 nicotinate phosphoribosyltransferase compare
ABID97_RS25860 -0.9 -1.3 LysR family transcriptional regulator compare
ABID97_RS07850 -0.9 -3.9 ABC transporter ATP-binding protein compare
ABID97_RS06150 -0.9 -4.3 tyrosine recombinase XerC compare
ABID97_RS17425 -0.9 -6.1 TonB-dependent receptor compare
ABID97_RS08440 -0.9 -3.4 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS05195 -0.9 -2.4 type VI secretion system protein compare
ABID97_RS09150 -0.9 -3.4 UvrD-helicase domain-containing protein compare
ABID97_RS10690 -0.9 -5.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS14975 -0.9 -1.9 hypothetical protein compare
ABID97_RS02275 -0.9 -3.7 recombinase RecA compare
ABID97_RS07395 -0.9 -1.5 glutaredoxin 3 compare
ABID97_RS07640 -0.9 -4.7 ubiquinol oxidase subunit II compare
ABID97_RS23230 -0.9 -5.6 transposase compare
ABID97_RS23265 -0.9 -5.5 type IV pilus secretin PilQ compare
ABID97_RS02775 -0.9 -5.0 VIT and VWA domain-containing protein compare
ABID97_RS17085 -0.9 -1.5 ORF6N domain-containing protein compare
ABID97_RS03275 -0.9 -1.8 hypothetical protein compare
ABID97_RS10210 -0.9 -0.8 TfoX/Sxy family protein compare
ABID97_RS08200 -0.9 -5.1 LytTR family DNA-binding domain-containing protein compare
ABID97_RS07410 -0.9 -3.2 carboxylating nicotinate-nucleotide diphosphorylase compare


Specific Phenotypes

None in this experiment

For Variovorax sp. OAS795 in carbon source experiments

For carbon source L-Glutamic acid monopotassium salt monohydrate across organisms