Experiment set1IT033 for Pseudomonas sp. S08-1

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
OH686_04475 -5.5 -6.6 3-isopropylmalate dehydratase small subunit compare
OH686_20010 -5.3 -11.2 Tricarboxylate transport sensor protein TctE compare
OH686_13600 -5.1 -13.6 N-acetylglutamate kinase compare
OH686_13885 -5.1 -11.8 argininosuccinate lyase compare
OH686_15195 -5.1 -8.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
OH686_10005 -5.0 -28.1 Glutamate synthase [NADPH] large chain compare
OH686_15135 -5.0 -5.9 Anthranilate phosphoribosyltransferase compare
OH686_14590 -4.9 -13.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
OH686_14580 -4.9 -15.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
OH686_21330 -4.9 -3.1 aspartate kinase, monofunctional class compare
OH686_04480 -4.8 -11.3 3-isopropylmalate dehydratase large subunit compare
OH686_20005 -4.8 -11.6 Tricarboxylate transport transcriptional regulator TctD compare
OH686_04470 -4.8 -16.7 3-isopropylmalate dehydrogenase compare
OH686_03930 -4.8 -12.0 argininosuccinate synthase compare
OH686_11400 -4.7 -15.5 threonine ammonia-lyase, biosynthetic compare
OH686_15125 -4.7 -20.6 anthranilate synthase component I compare
OH686_14100 -4.7 -17.9 dihydroxy-acid dehydratase compare
OH686_00475 -4.7 -13.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
OH686_14595 -4.7 -7.1 Imidazole glycerol phosphate synthase cyclase subunit compare
OH686_08125 -4.6 -14.0 acetolactate synthase, small subunit compare
OH686_10000 -4.6 -19.2 Glutamate synthase [NADPH] small chain compare
OH686_10160 -4.6 -9.2 Phosphoribosyl-AMP cyclohydrolase compare
OH686_08130 -4.5 -18.9 acetolactate synthase, large subunit, biosynthetic type compare
OH686_12430 -4.5 -14.2 tryptophan synthase, alpha subunit compare
OH686_15140 -4.5 -20.2 Indole-3-glycerol phosphate synthase compare
OH686_11000 -4.4 -18.5 homoserine O-acetyltransferase compare
OH686_10020 -4.4 -7.3 Shikimate kinase I compare
OH686_12425 -4.3 -13.6 tryptophan synthase, beta subunit compare
OH686_04445 -4.3 -14.3 Phosphoribosylanthranilate isomerase compare
OH686_08465 -4.3 -19.0 histidinol-phosphate transaminase compare
OH686_11120 -4.3 -13.4 amino-acid N-acetyltransferase compare
OH686_04415 -4.2 -13.8 O-succinylhomoserine sulfhydrylase compare
OH686_19995 -4.2 -14.0 Tripartite tricarboxylate transporter TctC family compare
OH686_10820 -4.2 -15.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
OH686_09445 -4.2 -15.0 ATP phosphoribosyltransferase, regulatory subunit compare
OH686_20405 -4.1 -8.4 ornithine carbamoyltransferase compare
OH686_08470 -4.1 -18.5 Histidinol dehydrogenase compare
OH686_08115 -4.1 -10.2 ketol-acid reductoisomerase compare
OH686_08475 -4.0 -15.7 ATP phosphoribosyltransferase compare
OH686_17260 -4.0 -4.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
OH686_03470 -4.0 -15.2 Sulfite reductase [NADPH] hemoprotein beta-component compare
OH686_11420 -3.9 -12.9 Phosphoserine phosphatase compare
OH686_07585 -3.8 -6.4 3-dehydroquinate dehydratase, type II compare
OH686_12485 -3.8 -4.5 Shikimate 5-dehydrogenase I alpha compare
OH686_13590 -3.8 -2.6 Orotate phosphoribosyltransferase compare
OH686_20870 -3.4 -4.1 Chorismate mutase I / Prephenate dehydratase compare
OH686_09555 -3.4 -15.5 phosphoserine phosphatase SerB compare
OH686_13545 -3.3 -13.2 RidA/YER057c/UK114 superfamily protein compare
OH686_14575 -3.3 -6.3 Imidazoleglycerol-phosphate dehydratase compare
OH686_03475 -3.3 -6.3 Oxidoreductase putative compare
OH686_09340 -3.3 -7.9 Gamma-glutamyl phosphate reductase compare
OH686_10980 -3.3 -4.5 pyrroline-5-carboxylate reductase compare
OH686_00285 -3.3 -14.3 Precorrin-2 oxidase or Sirohydrochlorin ferrochelatase activity of CysG / Uroporphyrinogen-III methyltransferase compare
OH686_13800 -3.3 -2.2 diaminopimelate decarboxylase compare
OH686_09625 -3.3 -5.0 hypothetical protein compare
OH686_10165 -3.2 -6.8 Phosphoribosyl-ATP pyrophosphatase compare
OH686_17570 -3.2 -13.3 2-isopropylmalate synthase compare
OH686_11280 -3.2 -6.4 D-3-phosphoglycerate dehydrogenase compare
OH686_18990 -3.1 -2.1 phosphoribosylglycinamide formyltransferase compare
OH686_20895 -3.1 -4.2 integration host factor, beta subunit compare
OH686_01030 -3.1 -2.1 ABC-type siderophore export system, fused ATPase and permease components compare
OH686_16305 -3.1 -8.1 Glutamate 5-kinase / RNA-binding C-terminal domain PUA compare
OH686_17100 -3.1 -2.1 Cell division-associated, ATP-dependent zinc metalloprotease FtsH compare
OH686_21295 -3.0 -3.0 arginine/ornithine succinyltransferase, alpha subunit compare
OH686_00115 -3.0 -2.1 NADH-ubiquinone oxidoreductase chain J compare
OH686_09505 -2.9 -2.8 3'-to-5' oligoribonuclease (orn) compare
OH686_02735 -2.9 -6.1 Flagellar synthesis regulator FleN compare
OH686_14280 -2.9 -10.0 thiamine biosynthesis protein ThiS compare
OH686_09710 -2.8 -2.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OH686_22870 -2.8 -2.7 integration host factor, alpha subunit compare
OH686_19985 -2.7 -14.2 Tripartite tricarboxylate transporter TctA family compare
OH686_12055 -2.7 -18.0 Citrate/H+ symporter of CitMHS family compare
OH686_17765 -2.7 -1.8 threonine synthase compare
OH686_11285 -2.7 -16.6 D-2-hydroxyglutarate dehydrogenase compare
OH686_00120 -2.6 -3.1 NADH-ubiquinone oxidoreductase chain I compare
OH686_19190 -2.6 -12.8 quinolinate synthetase complex, A subunit compare
OH686_11005 -2.6 -10.7 methionine biosynthesis protein MetW compare
OH686_21965 -2.6 -1.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
OH686_12195 -2.5 -4.4 Periplasmic thiol:disulfide interchange protein DsbA compare
OH686_16520 -2.5 -13.9 nicotinate-nucleotide diphosphorylase (carboxylating) compare
OH686_07900 -2.5 -9.7 Molybdopterin-synthase adenylyltransferase compare
OH686_20910 -2.5 -2.4 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
OH686_12075 -2.5 -1.7 Exodeoxyribonuclease V beta chain compare
OH686_12235 -2.5 -4.9 Zinc ABC transporter, substrate-binding protein ZnuA compare
OH686_17470 -2.4 -3.0 iron-sulfur cluster assembly transcription factor IscR compare
OH686_00145 -2.4 -7.4 NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D compare
OH686_07905 -2.4 -2.3 protein-(glutamine-N5) methyltransferase, release factor-specific compare
OH686_14285 -2.4 -14.6 Thiazole synthase compare
OH686_18180 -2.4 -2.3 Murein hydrolase activator NlpD compare
OH686_08505 -2.4 -2.3 Phospholipid ABC transporter permease protein MlaE compare
OH686_00135 -2.4 -4.7 NADH oxidoreductase (quinone), F subunit compare
OH686_00095 -2.3 -6.6 NADH-ubiquinone oxidoreductase chain N compare
OH686_09190 -2.3 -11.1 Thiamin-phosphate pyrophosphorylase compare
OH686_00130 -2.3 -5.7 NADH dehydrogenase (quinone), G subunit compare
OH686_12250 -2.3 -6.5 Zinc ABC transporter, permease protein ZnuB compare
OH686_07640 -2.3 -2.2 probable sensor/response regulator hybrid compare
OH686_14420 -2.2 -8.1 hypothetical protein compare
OH686_08495 -2.2 -2.9 Phospholipid ABC transporter shuttle protein MlaC compare
OH686_02195 -2.2 -2.1 cytochrome c oxidase, cbb3-type, subunit II compare
OH686_00100 -2.2 -4.9 NADH-ubiquinone oxidoreductase chain M compare
OH686_00140 -2.1 -4.2 NADH-ubiquinone oxidoreductase chain E compare
OH686_08500 -2.1 -2.5 outer membrane lipid asymmetry maintenance protein MlaD compare
OH686_03640 -2.1 -2.4 ATP-dependent Clp protease, ATP-binding subunit ClpX compare
OH686_21300 -2.1 -7.1 arginine N-succinyltransferase compare
OH686_14410 -2.0 -8.4 Glycosyl transferase, group 1 compare
OH686_20060 -2.0 -2.4 HtrA protease/chaperone protein compare
OH686_00150 -2.0 -5.5 NADH-ubiquinone oxidoreductase chain B compare
OH686_09185 -2.0 -8.4 Hydroxymethylpyrimidine phosphate kinase ThiD compare
OH686_00235 -2.0 -12.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
OH686_14425 -2.0 -13.4 glycosyl transferase, group 1 family protein compare
OH686_08510 -2.0 -2.9 Phospholipid ABC transporter ATP-binding protein MlaF compare
OH686_14435 -1.9 -14.8 Glycosyl transferase, group 1 family protein compare
OH686_00660 -1.9 -6.0 Isochorismatase compare
OH686_09620 -1.9 -8.7 Serine acetyltransferase compare
OH686_04115 -1.9 -2.2 hypothetical protein compare
OH686_08560 -1.9 -8.7 RNase adapter protein RapZ compare
OH686_22720 -1.9 -2.5 Outer-membrane-phospholipid-binding lipoprotein MlaA compare
OH686_05835 -1.9 -3.6 Transcriptional regulator, MarR family compare
OH686_11110 -1.9 -5.1 glutamate--cysteine ligase compare
OH686_03635 -1.8 -8.6 endopeptidase La compare
OH686_22150 -1.8 -4.3 beta-ketoacyl-acyl-carrier-protein synthase II compare
OH686_17760 -1.8 -2.7 Homoserine dehydrogenase compare
OH686_15885 -1.8 -14.1 phosphomethylpyrimidine synthase compare
OH686_01780 -1.8 -7.9 L,D-transpeptidase compare
OH686_00105 -1.8 -5.4 NADH-ubiquinone oxidoreductase chain L compare
OH686_02190 -1.8 -4.3 cytochrome c oxidase, cbb3-type, subunit I compare
OH686_09475 -1.7 -4.6 tRNA dimethylallyltransferase compare
OH686_12545 -1.7 -2.6 Lipid A biosynthesis lauroyl acyltransferase compare
OH686_13700 -1.7 -6.5 Putrescine utilization regulator compare
OH686_21945 -1.7 -8.4 hypothetical protein compare
OH686_09560 -1.7 -2.5 HAMP domain protein compare
OH686_21350 -1.7 -2.9 tRNA-Arg compare
OH686_11060 -1.7 -6.0 phosphoenolpyruvate carboxykinase (ATP) compare
OH686_17715 -1.7 -3.3 Inner membrane protein YpjD compare
OH686_19990 -1.7 -5.6 Tripartite tricarboxylate transporter TctB family compare
OH686_17405 -1.7 -3.1 Predicted transmembrane protein compare
OH686_12050 -1.6 -4.7 hypothetical protein' product='hypothetical protein compare
OH686_23215 -1.6 -1.9 hypothetical protein compare
OH686_00155 -1.6 -4.0 NADH ubiquinone oxidoreductase chain A compare
OH686_12240 -1.6 -3.4 Zinc uptake regulation protein Zur compare
OH686_14385 -1.6 -13.2 UDP-N-acetylglucosamine 2-epimerase compare
OH686_13425 -1.6 -8.4 phosphate ABC transporter, ATP-binding protein compare
OH686_01680 -1.6 -4.1 2-methylisocitrate dehydratase, Fe/S-dependent compare
OH686_13410 -1.6 -11.6 Phosphate ABC transporter, substrate-binding protein PstS compare
OH686_16990 -1.6 -11.9 Two-component system sensor histidine kinase compare
OH686_14415 -1.6 -8.9 Adenylylsulfate kinase compare
OH686_20320 -1.5 -1.4 hypothetical protein compare
OH686_13550 -1.5 -1.7 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase / GTP pyrophosphokinase , (p)ppGpp synthetase II compare
OH686_21550 -1.5 -2.0 Origin specific replication binding factor compare
OH686_14390 -1.5 -11.7 UDP-N-acetyl-D-mannosamine dehydrogenase compare
OH686_13415 -1.5 -10.1 Phosphate ABC transporter, permease protein PstC compare
OH686_21290 -1.5 -5.1 Succinylornithine transaminase compare
OH686_10575 -1.5 -10.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
OH686_00125 -1.5 -2.7 NADH-ubiquinone oxidoreductase chain H compare
OH686_20435 -1.5 -1.9 monothiol glutaredoxin, Grx4 family compare
OH686_11225 -1.5 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
OH686_12080 -1.4 -4.1 exodeoxyribonuclease V, gamma subunit compare
OH686_11425 -1.4 -4.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase compare
OH686_14395 -1.4 -11.4 hypothetical protein compare
OH686_07610 -1.4 -4.7 tRNA-dihydrouridine synthase DusB compare
OH686_17525 -1.4 -2.9 Cytoskeleton protein RodZ compare
OH686_16715 -1.4 -6.3 putative membrane protein compare
OH686_02205 -1.3 -1.9 cytochrome c oxidase, cbb3-type, subunit III compare
OH686_20315 -1.3 -1.4 UPF0337 protein compare
OH686_18935 -1.3 -1.8 hypothetical protein compare
OH686_15870 -1.3 -4.1 hypothetical protein compare
OH686_05545 -1.3 -2.0 hypothetical protein compare
OH686_19125 -1.3 -4.7 crossover junction endodeoxyribonuclease RuvC compare
OH686_17265 -1.3 -7.9 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
OH686_10320 -1.2 -8.2 Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] compare
OH686_13420 -1.2 -9.1 phosphate ABC transporter, permease protein PstA compare
OH686_21665 -1.2 -2.3 hypothetical protein compare
OH686_20000 -1.2 -6.3 Tricarboxylate porin OpdH compare
OH686_04735 -1.2 -6.2 Na(+) H(+) antiporter subunit F compare
OH686_14555 -1.2 -3.1 A/G-specific adenine glycosylase compare
OH686_03625 -1.2 -5.9 Peptidyl-prolyl cis-trans isomerase PpiD compare
OH686_13235 -1.2 -1.3 hypothetical protein compare
OH686_15625 -1.2 -6.8 dTDP-4-dehydrorhamnose reductase compare
OH686_19135 -1.2 -5.1 Holliday junction DNA helicase RuvB compare
OH686_09740 -1.2 -1.3 hypothetical protein compare
OH686_21595 -1.1 -3.2 hypothetical protein compare
OH686_08365 -1.1 -3.0 Uncharacterized protein YraP compare
OH686_17065 -1.1 -0.8 chaperone protein DnaJ compare
OH686_18175 -1.1 -4.5 protein-L-isoaspartate O-methyltransferase compare
OH686_22050 -1.1 -1.8 MotA/TolQ/ExbB proton channel family protein compare
OH686_04640 -1.1 -2.2 hypothetical protein compare
OH686_21570 -1.1 -1.9 Phage recombination protein NinG compare
OH686_05085 -1.1 -8.0 precorrin-6A synthase (deacetylating) compare
OH686_21960 -1.1 -2.5 repressor LexA compare
OH686_19770 -1.1 -3.3 septum site-determining protein MinD compare
OH686_18945 -1.1 -7.4 Signal transduction histidine-protein kinase BarA compare
OH686_17540 -1.1 -2.3 UPF0070 protein YfgM compare
OH686_21305 -1.1 -1.8 succinylglutamate-semialdehyde dehydrogenase compare
OH686_12130 -1.1 -1.7 UPF0391 membrane protein YtjA compare
OH686_07285 -1.1 -2.7 hypothetical protein' product='hypothetical protein compare
OH686_03465 -1.1 -4.0 CDS compare
OH686_10030 -1.1 -3.0 CDS compare
OH686_20815 -1.1 -1.3 hypothetical protein compare
OH686_17740 -1.0 -1.6 ribosomal protein L19 compare
OH686_03280 -1.0 -1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. S08-1 in carbon source experiments

For carbon source Trisodium citrate dihydrate across organisms