Experiment set1IT033 for Pseudomonas fluorescens SBW25

Compare to:

Trisodium citrate dihydrate carbon source; with MOPS

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS14715 +2.3 8.7 protein-glutamate O-methyltransferase CheR compare
PFLU_RS00435 +1.9 13.0 PAS domain-containing protein compare
PFLU_RS00040 +1.5 12.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS29810 +1.3 10.5 LysR family transcriptional regulator compare
PFLU_RS22535 +1.3 10.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS28120 +1.3 1.6 DUF1090 domain-containing protein compare
PFLU_RS21795 +1.3 11.7 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS23325 +1.3 8.2 GlxA family transcriptional regulator compare
PFLU_RS00460 +1.3 8.4 glutamate/aspartate:proton symporter GltP compare
PFLU_RS13085 +1.3 2.9 DUF1315 family protein compare
PFLU_RS00375 +1.1 1.1 transcriptional repressor compare
PFLU_RS30555 +1.1 1.5 hypothetical protein compare
PFLU_RS21705 +1.1 7.2 flagellar biosynthesis protein FliQ compare
PFLU_RS10955 +1.1 3.0 peptide-methionine (S)-S-oxide reductase MsrA compare
PFLU_RS29780 +1.1 5.0 acyl-CoA thioesterase compare
PFLU_RS23175 +1.0 7.0 flagellar basal body rod protein FlgC compare
PFLU_RS14680 +1.0 2.5 cbb3-type cytochrome c oxidase subunit 3 compare
PFLU_RS29560 +1.0 1.2 hypothetical protein compare
PFLU_RS08185 +1.0 6.7 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS26145 +1.0 2.1 hypothetical protein compare
PFLU_RS21925 +1.0 4.4 YecA family protein compare
PFLU_RS23675 +1.0 1.2 hypothetical protein compare
PFLU_RS21735 +1.0 6.6 flagellar hook-length control protein FliK compare
PFLU_RS21700 +1.0 5.1 flagellar type III secretion system protein FliR compare
PFLU_RS08485 +1.0 1.9 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS17615 +1.0 1.3 DeoR/GlpR transcriptional regulator compare
PFLU_RS02890 +0.9 1.9 urea ABC transporter ATP-binding protein UrtD compare
PFLU_RS21710 +0.9 4.4 flagellar type III secretion system pore protein FliP compare
PFLU_RS07630 +0.9 7.1 transglycosylase SLT domain-containing protein compare
PFLU_RS27915 +0.9 1.4 DUF3010 family protein compare
PFLU_RS23180 +0.9 6.4 flagellar basal body rod protein FlgB compare
PFLU_RS21850 +0.9 6.7 flagellar basal body L-ring protein FlgH compare
PFLU_RS21860 +0.9 3.5 flagellar basal body rod protein FlgF compare
PFLU_RS28790 +0.9 1.3 hypothetical protein compare
PFLU_RS21660 +0.9 6.5 RNA polymerase sigma factor FliA compare
PFLU_RS24895 +0.9 1.2 preprotein translocase subunit YajC compare
PFLU_RS29350 +0.9 2.5 xanthine phosphoribosyltransferase compare
PFLU_RS21755 +0.8 4.7 flagella biosynthesis chaperone FliJ compare
PFLU_RS29815 +0.8 0.9 aspartate ammonia-lyase compare
PFLU_RS18700 +0.8 1.4 hypothetical protein compare
PFLU_RS22385 +0.8 5.5 oxygen-independent coproporphyrinogen III oxidase compare
PFLU_RS31590 +0.8 2.2 hypothetical protein compare
PFLU_RS17505 +0.8 1.7 hypothetical protein compare
PFLU_RS23195 +0.8 6.8 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS21845 +0.8 4.1 flagellar basal body P-ring protein FlgI compare
PFLU_RS17895 +0.8 2.9 glycosyltransferase family 2 protein compare
PFLU_RS23235 +0.8 2.4 Arc family DNA-binding protein compare
PFLU_RS26565 +0.8 0.9 rRNA maturation RNase YbeY compare
PFLU_RS21695 +0.8 5.7 flagellar biosynthesis protein FlhB compare
PFLU_RS13885 +0.8 1.6 hypothetical protein compare
PFLU_RS08765 +0.8 1.7 phosphonate C-P lyase system protein PhnH compare
PFLU_RS12375 +0.8 1.6 hypothetical protein compare
PFLU_RS31830 +0.8 2.0 hypothetical protein compare
PFLU_RS17130 +0.8 2.5 protein BatD compare
PFLU_RS21760 +0.8 5.2 flagellar protein export ATPase FliI compare
PFLU_RS24020 +0.8 4.4 RDD family protein compare
PFLU_RS29380 +0.8 5.5 D-amino acid dehydrogenase compare
PFLU_RS23165 +0.8 6.8 flagellar hook protein FlgE compare
PFLU_RS10655 +0.8 1.2 RcnB family protein compare
PFLU_RS05020 +0.8 1.4 DUF1120 domain-containing protein compare
PFLU_RS21675 +0.8 5.9 flagellar biosynthesis protein FlhA compare
PFLU_RS26955 +0.8 5.2 sugar nucleotide-binding protein compare
PFLU_RS01500 +0.8 0.8 cell division protein FtsQ compare
PFLU_RS30730 +0.7 2.3 helix-turn-helix domain-containing protein compare
PFLU_RS17110 +0.7 2.3 DUF58 domain-containing protein compare
PFLU_RS21840 +0.7 4.4 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS13215 +0.7 1.9 LysR family transcriptional regulator compare
PFLU_RS02575 +0.7 4.7 GTPase HflX compare
PFLU_RS31690 +0.7 1.2 hypothetical protein compare
PFLU_RS13965 +0.7 1.9 hypothetical protein compare
PFLU_RS17125 +0.7 3.5 VWA domain-containing protein compare
PFLU_RS29190 +0.7 5.3 disulfide bond formation protein B compare
PFLU_RS28395 +0.7 3.8 DUF4426 domain-containing protein compare
PFLU_RS20970 +0.7 2.2 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS19010 +0.7 2.0 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS00155 +0.7 4.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PFLU_RS00065 +0.7 3.6 lysophospholipid acyltransferase compare
PFLU_RS04980 +0.7 3.0 type II toxin-antitoxin system MqsA family antitoxin compare
PFLU_RS17105 +0.7 3.4 MoxR family ATPase compare
PFLU_RS00410 +0.7 4.1 cytochrome c4 compare
PFLU_RS03245 +0.7 4.5 hypothetical protein compare
PFLU_RS15515 +0.7 1.8 hypothetical protein compare
PFLU_RS14125 +0.6 1.0 lysozyme compare
PFLU_RS21780 +0.6 1.2 flagellar hook-basal body complex protein FliE compare
PFLU_RS24980 +0.6 1.2 purine-binding chemotaxis protein CheW compare
PFLU_RS23895 +0.6 1.2 DUF1289 domain-containing protein compare
PFLU_RS07270 +0.6 3.5 glycine cleavage system protein R compare
PFLU_RS21960 +0.6 3.5 hypothetical protein compare
PFLU_RS23205 +0.6 4.5 flagellar protein FlgN compare
PFLU_RS09495 +0.6 2.2 helix-turn-helix transcriptional regulator compare
PFLU_RS21690 +0.6 0.8 DNA-binding protein compare
PFLU_RS05660 +0.6 5.0 glycerol kinase GlpK compare
PFLU_RS02580 +0.6 4.2 FtsH protease activity modulator HflK compare
PFLU_RS05620 +0.6 1.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS28315 +0.6 0.6 response regulator compare
PFLU_RS31760 +0.6 2.8 AraC family transcriptional regulator compare
PFLU_RS08625 +0.6 1.4 molybdenum cofactor biosynthesis protein B compare
PFLU_RS31805 +0.6 1.6 hypothetical protein compare
PFLU_RS15795 +0.6 1.4 hypothetical protein compare
PFLU_RS20695 +0.6 4.0 M4 family metallopeptidase compare
PFLU_RS15940 +0.6 1.1 5-carboxymethyl-2-hydroxymuconate isomerase compare
PFLU_RS09190 +0.6 2.0 hypothetical protein compare
PFLU_RS04835 +0.6 0.7 hypothetical protein compare
PFLU_RS19475 +0.6 1.5 Zn-dependent hydrolase compare
PFLU_RS25210 +0.6 2.0 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS05720 +0.6 4.2 OmpA family protein compare
PFLU_RS02215 +0.6 1.5 hypothetical protein compare
PFLU_RS18420 +0.6 0.9 hypothetical protein compare
PFLU_RS17570 +0.6 2.1 DNA polymerase Y family protein compare
PFLU_RS21775 +0.6 3.7 flagellar basal body M-ring protein FliF compare
PFLU_RS05650 +0.6 0.8 glycerol-3-phosphate dehydrogenase compare
PFLU_RS09535 +0.6 1.0 TIGR03750 family conjugal transfer protein compare
PFLU_RS21765 +0.6 2.1 flagellar assembly protein FliH compare
PFLU_RS21725 +0.6 4.0 flagellar motor switch protein FliM compare
PFLU_RS16735 +0.6 2.8 ATP-binding protein compare
PFLU_RS18585 +0.6 1.2 high frequency lysogenization protein HflD compare
PFLU_RS07690 +0.6 2.1 helix-turn-helix transcriptional regulator compare
PFLU_RS15950 +0.6 1.8 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
PFLU_RS24130 +0.6 1.4 protein SlyX compare
PFLU_RS21855 +0.6 3.6 flagellar basal-body rod protein FlgG compare
PFLU_RS31530 +0.6 0.7 transposase compare
PFLU_RS21560 +0.6 0.7 enoyl-CoA hydratase compare
PFLU_RS12725 +0.6 0.9 GNAT family N-acetyltransferase compare
PFLU_RS08105 +0.6 2.1 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS00310 +0.5 1.4 twin transmembrane helix small protein compare
PFLU_RS21835 +0.5 4.0 flagellar hook-associated protein FlgK compare
PFLU_RS29505 +0.5 1.6 DNA-directed RNA polymerase subunit omega compare
PFLU_RS21790 +0.5 3.0 PAS domain-containing protein compare
PFLU_RS01470 +0.5 3.4 cellulose synthase operon protein YhjQ compare
PFLU_RS12550 +0.5 2.2 aldo/keto reductase compare
PFLU_RS07355 +0.5 2.5 SDR family oxidoreductase compare
PFLU_RS27300 +0.5 4.3 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS12800 +0.5 1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS30645 +0.5 1.1 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS10035 +0.5 1.8 metal ABC transporter ATP-binding protein compare
PFLU_RS00070 +0.5 2.2 tetratricopeptide repeat protein compare
PFLU_RS20550 +0.5 3.7 FimV family protein compare
PFLU_RS17635 +0.5 0.9 hypothetical protein compare
PFLU_RS21635 +0.5 2.2 flagellar motor protein compare
PFLU_RS22665 +0.5 0.7 alanyl-tRNA editing protein compare
PFLU_RS08615 +0.5 2.1 YgdI/YgdR family lipoprotein compare
PFLU_RS31045 +0.5 2.4 ribosome modulation factor compare
PFLU_RS14255 +0.5 2.3 TolC family protein compare
PFLU_RS00530 +0.5 0.6 DUF2388 domain-containing protein compare
PFLU_RS15895 +0.5 1.9 MFS transporter compare
PFLU_RS01475 +0.5 4.2 UDP-forming cellulose synthase catalytic subunit compare
PFLU_RS04490 +0.5 2.9 hypoxanthine-guanine phosphoribosyltransferase compare
PFLU_RS03585 +0.5 1.7 hypothetical protein compare
PFLU_RS01490 +0.5 4.3 cellulose biosynthesis protein BcsC compare
PFLU_RS23695 +0.5 0.6 MaoC family dehydratase compare
PFLU_RS29765 +0.5 4.4 ABC transporter permease subunit compare
PFLU_RS24330 +0.5 2.7 phosphogluconate dehydratase compare
PFLU_RS24870 +0.5 1.0 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ compare
PFLU_RS20150 +0.5 1.8 response regulator compare
PFLU_RS16075 +0.5 1.4 aldehyde dehydrogenase compare
PFLU_RS26400 +0.5 1.9 HAD family hydrolase compare
PFLU_RS29705 +0.5 1.7 rubredoxin compare
PFLU_RS21830 +0.5 4.4 flagellar hook-associated protein 3 compare
PFLU_RS08285 +0.5 2.0 hypothetical protein compare
PFLU_RS21770 +0.5 3.0 flagellar motor switch protein FliG compare
PFLU_RS26515 +0.5 4.2 AMP nucleosidase compare
PFLU_RS14760 +0.5 1.1 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS30420 +0.5 1.4 hypothetical protein compare
PFLU_RS06625 +0.5 3.1 ABC transporter ATP-binding protein compare
PFLU_RS16055 +0.5 1.6 GntR family transcriptional regulator compare
PFLU_RS01880 +0.5 2.2 twin-arginine translocase subunit TatC compare
PFLU_RS01480 +0.5 4.1 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB compare
PFLU_RS22215 +0.5 2.0 3-phosphoglycerate kinase compare
PFLU_RS04485 +0.5 3.7 uracil phosphoribosyltransferase compare
PFLU_RS15800 +0.5 1.6 immunity 49 family protein compare
PFLU_RS18550 +0.5 3.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS30500 +0.5 1.7 LapA family protein compare
PFLU_RS22260 +0.5 2.8 beta-ketoacyl-ACP synthase III compare
PFLU_RS14500 +0.5 0.7 hypothetical protein compare
PFLU_RS26460 +0.5 3.1 NYN domain-containing protein compare
PFLU_RS05705 +0.5 2.5 peroxiredoxin compare
PFLU_RS14370 +0.5 1.7 hypothetical protein compare
PFLU_RS24935 +0.5 1.8 two pore domain potassium channel family protein compare
PFLU_RS31430 +0.5 1.7 hypothetical protein compare
PFLU_RS27660 +0.5 1.8 LysR family transcriptional regulator compare
PFLU_RS31075 +0.5 2.2 hypothetical protein compare
PFLU_RS08875 +0.5 1.6 heme-binding protein compare
PFLU_RS17705 +0.5 2.3 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS16290 +0.5 1.7 hypothetical protein compare
PFLU_RS05665 +0.5 3.3 aquaporin compare
PFLU_RS30215 +0.5 2.0 KTSC domain-containing protein compare
PFLU_RS25215 +0.5 2.8 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS11560 +0.5 1.6 aldolase compare
PFLU_RS04205 +0.5 2.3 cytochrome c1 compare
PFLU_RS20700 +0.5 3.4 DNA/RNA non-specific endonuclease compare
PFLU_RS21910 +0.5 3.8 BamA/TamA family outer membrane protein compare
PFLU_RS12880 +0.5 2.7 ABC transporter ATP-binding protein compare
PFLU_RS22190 +0.5 0.6 hypothetical protein compare
PFLU_RS23095 +0.5 2.4 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
PFLU_RS24100 +0.5 3.2 YebC/PmpR family DNA-binding transcriptional regulator compare
PFLU_RS21335 +0.5 2.8 DUF1446 domain-containing protein compare
PFLU_RS21730 +0.5 2.8 flagellar basal body-associated protein FliL compare
PFLU_RS29620 +0.5 1.9 type VI secretion system-associated FHA domain protein TagH compare
PFLU_RS12330 +0.5 1.7 ABC transporter substrate-binding protein compare
PFLU_RS08980 +0.4 3.5 branched-chain amino acid transport system II carrier protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25 in carbon source experiments

For carbon source Trisodium citrate dihydrate across organisms