Experiment set1IT033 for Enterobacter asburiae PDN3

Compare to:

MS_media no stress control

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_3667 -6.0 -4.0 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_2635 -5.1 -8.6 Fructose-2,6-bisphosphatase compare
EX28DRAFT_0538 -4.5 -6.1 histidinol-phosphate aminotransferase compare
EX28DRAFT_2027 -4.3 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_2651 -4.1 -7.1 glutamate 5-kinase compare
EX28DRAFT_0936 -4.0 -5.9 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_2893 -3.9 -4.9 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_4493 -3.9 -5.3 Transcriptional regulator compare
EX28DRAFT_3730 -3.8 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_4422 -3.8 -5.4 argininosuccinate lyase compare
EX28DRAFT_3668 -3.7 -8.4 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_4419 -3.7 -2.0 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_0932 -3.6 -4.0 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_0934 -3.5 -10.2 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_3276 -3.3 -4.7 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_0537 -3.3 -7.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_3224 -3.2 -3.1 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_3614 -3.1 -6.1 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_1986 -3.1 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_4446 -3.1 -7.5 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_2272 -3.1 -7.0 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0933 -3.0 -9.8 tryptophan synthase, beta subunit compare
EX28DRAFT_4544 -2.9 -0.8 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_1121 -2.9 -2.4 Sugar kinases, ribokinase family compare
EX28DRAFT_3669 -2.9 -6.0 3-isopropylmalate dehydrogenase compare
EX28DRAFT_2701 -2.9 -6.3 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0533 -2.9 -5.0 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_4418 -2.8 -6.0 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_2916 -2.8 -6.1 diaminopimelate decarboxylase compare
EX28DRAFT_4421 -2.7 -0.7 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_2632 -2.7 -11.1 Major Facilitator Superfamily compare
EX28DRAFT_2650 -2.6 -4.5 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_4292 -2.6 -5.6 Acetyltransferase (GNAT) domain compare
EX28DRAFT_2958 -2.5 -1.8 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_1719 -2.5 -1.5 integration host factor, alpha subunit compare
EX28DRAFT_4444 -2.5 -4.8 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_3729 -2.5 -5.1 pantoate--beta-alanine ligase compare
EX28DRAFT_3728 -2.4 -3.4 L-aspartate 1-decarboxylase (EC 4.1.1.11) compare
EX28DRAFT_0935 -2.4 -4.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_2917 -2.4 -3.8 Transcriptional regulator compare
EX28DRAFT_2851 -2.4 -2.6 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_3275 -2.4 -10.4 Glutamate synthase domain 2 compare
EX28DRAFT_4478 -2.3 -4.3 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_4445 -2.3 -4.9 Transcriptional regulator compare
EX28DRAFT_0046 -2.3 -2.0 shikimate dehydrogenase compare
EX28DRAFT_0540 -2.2 -4.8 ATP phosphoribosyltransferase compare
EX28DRAFT_0111 -2.2 -2.0 FeS cluster assembly scaffold IscU compare
EX28DRAFT_2270 -2.2 -1.0 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_0534 -2.2 -4.2 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_2265 -2.2 -0.8 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0539 -2.1 -4.3 histidinol dehydrogenase compare
EX28DRAFT_0292 -2.1 -1.2 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_2633 -2.1 -3.1 Uncharacterised nucleotidyltransferase compare
EX28DRAFT_4153 -2.1 -1.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_2252 -2.0 -1.9 TolA protein compare
EX28DRAFT_0535 -2.0 -4.4 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_2585 -2.0 -1.3 pyrroline-5-carboxylate reductase compare
EX28DRAFT_4507 -2.0 -4.7 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_4443 -2.0 -7.1 dihydroxy-acid dehydratase compare
EX28DRAFT_4350 -2.0 -0.7 nitrogen regulation protein NR(I) compare
EX28DRAFT_3670 -1.9 -5.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_1596 -1.9 -1.0 Protein of unknown function (DUF1019) compare
EX28DRAFT_4156 -1.8 -1.8 ribulose-phosphate 3-epimerase compare
EX28DRAFT_2699 -1.8 -3.6 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_4386 -1.8 -2.5 Signal transduction histidine kinase compare
EX28DRAFT_2546 -1.8 -7.0 2-dehydropantoate 2-reductase compare
EX28DRAFT_2043 -1.8 -4.8 transcriptional regulator, AsnC family compare
EX28DRAFT_3461 -1.7 -3.0 ornithine carbamoyltransferase compare
EX28DRAFT_0693 -1.7 -1.0 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_4420 -1.7 -0.6 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_4331 -1.7 -5.2 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_1877 -1.6 -2.9 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
EX28DRAFT_2271 -1.6 -5.0 hypothetical protein compare
EX28DRAFT_4170 -1.6 -4.6 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_0068 -1.6 -1.5 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_3883 -1.6 -3.7 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_4411 -1.6 -6.5 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_0536 -1.6 -1.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_0620 -1.6 -0.9 Flagellar protein FliT compare
EX28DRAFT_3046 -1.6 -3.8 cystathionine beta-lyase, bacterial compare
EX28DRAFT_0167 -1.5 -1.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_4297 -1.5 -1.4 cell division ATP-binding protein FtsE compare
EX28DRAFT_2531 -1.5 -2.7 endopeptidase La compare
EX28DRAFT_1123 -1.5 -5.7 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_4271 -1.5 -0.8 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_0494 -1.4 -1.4 Protein-tyrosine-phosphatase compare
EX28DRAFT_3285 -1.4 -4.3 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_2250 -1.4 -2.1 peptidoglycan-associated lipoprotein compare
EX28DRAFT_2702 -1.4 -3.5 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_2634 -1.4 -4.6 hypothetical protein compare
EX28DRAFT_3671 -1.4 -1.9 RNA compare
EX28DRAFT_0523 -1.3 -0.9 Glycosyltransferase like family 2 compare
EX28DRAFT_2853 -1.3 -3.3 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_0190 -1.3 -1.3 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_0531 -1.3 -4.4 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_3879 -1.2 -2.6 Glycosyltransferase compare
EX28DRAFT_4442 -1.2 -3.4 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_4184 -1.2 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1122 -1.2 -6.1 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_3616 -1.2 -1.5 threonine synthase compare
EX28DRAFT_4280 -1.1 -0.9 Protein of unknown function (DUF2756) compare
EX28DRAFT_2540 -1.1 -3.4 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_0526 -1.1 -1.9 hypothetical protein compare
EX28DRAFT_0769 -1.1 -0.7 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_2267 -1.1 -4.1 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_2216 -1.1 -4.9 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_0972 -1.1 -1.0 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_2008 -1.1 -2.8 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_3754 -1.1 -0.6 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_3710 -1.1 -3.8 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_0291 -1.1 -1.5 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_4452 -1.1 -1.4 thioredoxin compare
EX28DRAFT_3613 -1.1 -2.6 RNA compare
EX28DRAFT_4085 -1.1 -4.3 Predicted xylanase/chitin deacetylase compare
EX28DRAFT_2974 -1.0 -3.6 transketolase, bacterial and yeast compare
EX28DRAFT_0069 -1.0 -1.7 Superfamily II DNA and RNA helicases compare
EX28DRAFT_0272 -1.0 -1.2 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0545 -1.0 -2.0 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_0092 -1.0 -0.5 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_4296 -0.9 -2.7 putative protein insertion permease FtsX compare
EX28DRAFT_0857 -0.9 -1.0 tRNA compare
EX28DRAFT_2492 -0.9 -2.3 Protein of unknown function (DUF2496) compare
EX28DRAFT_3369 -0.9 -0.9 RNA chaperone Hfq compare
EX28DRAFT_1841 -0.9 -1.0 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_0901 -0.9 -1.1 hypothetical protein compare
EX28DRAFT_4426 -0.9 -0.9 transcriptional regulator, TetR family compare
EX28DRAFT_2852 -0.9 -3.7 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_1310 -0.9 -1.3 phage replication protein P compare
EX28DRAFT_4505 -0.9 -2.6 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_0517 -0.9 -2.6 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
EX28DRAFT_0330 -0.9 -1.9 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_2400 -0.9 -0.6 Cold shock proteins compare
EX28DRAFT_0038 -0.9 -1.2 K+ transport systems, NAD-binding component compare
EX28DRAFT_2213 -0.9 -2.5 dethiobiotin synthase compare
EX28DRAFT_4267 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2541 -0.8 -1.0 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_1396 -0.8 -0.8 Amidases related to nicotinamidase compare
EX28DRAFT_0779 -0.8 -2.4 hypothetical protein compare
EX28DRAFT_2945 -0.8 -0.7 tyrosine recombinase XerD compare
EX28DRAFT_1474 -0.8 -0.9 AraC-type DNA-binding domain-containing proteins compare
EX28DRAFT_0181 -0.8 -3.0 Glycine cleavage system regulatory protein compare
EX28DRAFT_1909 -0.8 -1.2 Protein of unknown function (DUF3574) compare
EX28DRAFT_3645 -0.8 -2.0 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_2964 -0.8 -2.1 5,10-methenyltetrahydrofolate synthetase compare
EX28DRAFT_1124 -0.8 -4.4 sucrose-6-phosphate hydrolase compare
EX28DRAFT_1128 -0.8 -1.0 hypothetical protein compare
EX28DRAFT_0286 -0.8 -1.1 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_3634 -0.8 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
EX28DRAFT_2268 -0.8 -4.1 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_1374 -0.7 -0.7 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_0732 -0.7 -1.9 YebO-like protein compare
EX28DRAFT_2225 -0.7 -2.7 3-carboxymuconate cyclase compare
EX28DRAFT_3948 -0.7 -1.5 KAP family P-loop domain compare
EX28DRAFT_0647 -0.7 -1.1 Ferritin-like protein compare
EX28DRAFT_2421 -0.7 -0.9 Protein of unknown function (DUF1158) compare
EX28DRAFT_0783 -0.7 -2.2 ABC-type phosphate/phosphonate transport system, periplasmic component compare
EX28DRAFT_2849 -0.7 -2.0 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_0118 -0.7 -2.2 SseB protein C-terminal domain/SseB protein N-terminal domain compare
EX28DRAFT_3372 -0.7 -2.5 HflC protein compare
EX28DRAFT_1882 -0.7 -3.4 Periplasmic glucans biosynthesis protein compare
EX28DRAFT_4318 -0.7 -2.3 Glucose-6-phosphate isomerase compare
EX28DRAFT_2948 -0.7 -2.6 Uncharacterized conserved protein compare
EX28DRAFT_3253 -0.7 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2543 -0.7 -3.8 protoheme IX farnesyltransferase compare
EX28DRAFT_0529 -0.7 -1.6 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_0001 -0.7 -1.3 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_2846 -0.7 -1.6 adenylyl-sulfate kinase compare
EX28DRAFT_1039 -0.7 -1.2 Sortase and related acyltransferases compare
EX28DRAFT_2269 -0.7 -1.9 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_1785 -0.7 -0.9 Putative hemolysin compare
EX28DRAFT_3070 -0.7 -1.1 Predicted phosphohydrolases compare
EX28DRAFT_4437 -0.7 -2.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3259 -0.7 -3.6 Predicted P-loop-containing kinase compare
EX28DRAFT_1016 -0.7 -1.2 Uncharacterized conserved protein compare
EX28DRAFT_1029 -0.6 -1.0 ABC-type spermidine/putrescine transport system, permease component II compare
EX28DRAFT_1295 -0.6 -1.4 Protein of unknown function (DUF2570) compare
EX28DRAFT_3375 -0.6 -0.5 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_4341 -0.6 -1.4 Protein-disulfide isomerase compare
EX28DRAFT_3626 -0.6 -1.2 RNA compare
EX28DRAFT_3410 -0.6 -1.5 hypothetical protein compare
EX28DRAFT_1699 -0.6 -1.5 hypothetical protein compare
EX28DRAFT_1771 -0.6 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3825 -0.6 -1.5 YsaB-like lipoprotein compare
EX28DRAFT_2816 -0.6 -2.4 Transcriptional repressor of hyc and hyp operons compare
EX28DRAFT_1471 -0.6 -1.5 Predicted transcriptional regulator compare
EX28DRAFT_0219 -0.6 -2.1 Predicted Na+-dependent transporter compare
EX28DRAFT_2999 -0.6 -1.1 Fe-S cluster protector protein compare
EX28DRAFT_3864 -0.6 -3.5 Membrane-bound metallopeptidase compare
EX28DRAFT_0621 -0.6 -1.5 flagellar biosynthetic protein FliS compare
EX28DRAFT_1644 -0.6 -1.3 Predicted oxidoreductase compare
EX28DRAFT_4147 -0.6 -2.4 hypothetical protein compare
EX28DRAFT_2847 -0.6 -3.6 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_1650 -0.6 -0.7 ribonuclease T compare
EX28DRAFT_3910 -0.6 -1.5 Helix-turn-helix domain compare
EX28DRAFT_0132 -0.6 -1.6 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_1823 -0.6 -1.3 Beta-glucosidase-related glycosidases compare
EX28DRAFT_3036 -0.6 -1.6 RNA compare
EX28DRAFT_2873 -0.6 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1932 -0.6 -1.2 Mg/Co/Ni transporter MgtE (contains CBS domain) compare
EX28DRAFT_1626 -0.6 -0.8 electron transport complex, RnfABCDGE type, D subunit compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in no stress control experiments