Experiment set1IT033 for Caulobacter crescentus NA1000 Δfur

Compare to:

PYE with CHIR-090 10 ug/mL

200 most important genes:

  gene name fitness t score description  
CCNA_02286 -4.1 -1.3 hypothetical protein compare
CCNA_01279 -3.9 -2.4 inorganic polyphosphate/ATP-NAD kinase compare
CCNA_01496 -3.6 -2.0 2-dehydro-3-deoxyphosphooctonate aldolase compare
CCNA_00239 -3.1 -1.7 serine kinase/phosphatase HprK compare
CCNA_03337 -3.1 -3.1 peptidoglycan-associated lipoprotein pal compare
CCNA_00304 -3.1 -3.7 3-deoxy-D-manno-octulosonic-acid transferase compare
CCNA_01218 -3.0 -10.7 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_00379 -3.0 -1.9 thiol:disulfide interchange protein dsbA compare
CCNA_01988 -2.9 -2.0 UDP-N-acetylglucosamine O-acyltransferase LpxA compare
CCNA_00953 -2.9 -2.8 flagellar motor switch protein FliN compare
CCNA_01211 -2.9 -5.5 MobA-like NTP transferase domain protein compare
CCNA_02962 -2.9 -1.3 HicB-family RNAse H fold protein compare
CCNA_03650 -2.8 -1.9 mannose-1-phosphate guanyltransferase compare
CCNA_03577 -2.8 -2.3 DNA polymerase I compare
CCNA_03835 -2.8 -1.9 3-oxoacyl-(acyl-carrier-protein) synthase compare
CCNA_03336 -2.7 -6.3 Tol system periplasmic component YbgF compare
CCNA_01214 -2.7 -3.3 YjgP/YjgQ family membrane permease compare
CCNA_02217 -2.7 -2.8 hypothetical protein compare
CCNA_01217 -2.7 -16.3 phosphatidylglycerophosphate synthase compare
CCNA_01971 -2.7 -2.6 peptidyl-prolyl cis-trans isomerase compare
CCNA_01538 -2.6 -1.8 pyruvate phosphate dikinase compare
CCNA_01676 -2.6 -1.8 hypothetical protein compare
CCNA_01212 -2.6 -12.4 dATP pyrophosphohydrolase compare
CCNA_00036 -2.6 -3.5 ribosome-binding factor A compare
CCNA_01223 -2.6 -12.9 acyl-CoA synthetase compare
CCNA_02849 -2.6 -2.7 cytochrome c-type biogenesis heme chaperone compare
CCNA_01222 -2.5 -9.4 NADH-ubiquinone oxidoreductase compare
CCNA_01324 -2.5 -2.4 LSU ribosomal protein L30P compare
CCNA_03072 -2.5 -2.4 TetR-family transcriptional regulator compare
CCNA_01556 -2.5 -2.9 LacI-family transcriptional regulator compare
CCNA_03859 -2.5 -3.4 two-component response regulator cenR compare
CCNA_03755 -2.5 -6.7 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase compare
CCNA_03732 -2.4 -4.6 N-acyl-D-glucosamine 2-epimerase compare
CCNA_02664 -2.4 -1.8 flagellar assembly regulator FliX compare
CCNA_03052 -2.4 -5.3 acyltransferase compare
CCNA_01220 -2.4 -9.6 7-keto-8-aminopelargonate synthetase compare
CCNA_02325 -2.4 -2.4 ornithine carbamoyltransferase compare
CCNA_00349 -2.3 -2.5 integrase/recombinase, XerC-CodV family compare
CCNA_01221 -2.3 -7.4 acyl carrier protein compare
CCNA_01224 -2.3 -7.3 O-antigen membrane transport protein compare
CCNA_00293 -2.3 -2.9 phosphate transport system permease protein pstA compare
CCNA_00135 -2.3 -6.6 trypsin-like peptidase compare
CCNA_03277 -2.2 -5.3 glycosyltransferase compare
CCNA_01213 -2.2 -3.3 YjgP/YjgQ family membrane permease compare
CCNA_01219 -2.2 -6.8 putative cytosolic protein compare
CCNA_01129 -2.2 -3.0 flagellar biosynthesis protein FliQ compare
CCNA_02094 -2.0 -3.0 MviM-like NAD-dependent oxidoreductase compare
CCNA_01795 -2.0 -3.2 phosphopyruvate hydratase compare
CCNA_00306 -1.9 -5.9 lysophospholipid acyltransferase compare
CCNA_00708 -1.9 -2.6 cobaltochelatase cobT subunit compare
CCNA_02941 -1.9 -1.3 transcription elongation factor greA compare
CCNA_02329 -1.8 -1.7 exodeoxyribonuclease VII large subunit compare
CCNA_00294 -1.8 -2.1 phosphate transport ATP-binding protein pstB compare
CCNA_02075 -1.8 -5.4 peptidoglycan binding endopeptidase DipM compare
CCNA_00976 -1.8 -2.7 signal peptide peptidase A compare
CCNA_01210 -1.8 -6.6 nucleotidyltransferase family protein compare
CCNA_01103 -1.8 -5.2 ADP-heptose--LPS heptosyltransferase compare
CCNA_02390 -1.8 -3.5 phosphoglycolate phosphatase compare
CCNA_03790 -1.7 -2.3 hypothetical protein compare
CCNA_02085 -1.7 -4.2 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase compare
CCNA_03548 -1.7 -6.0 carboxy-terminal processing protease precursor compare
CCNA_02650 -1.7 -3.9 N-acetyl-anhydromuramyl-L-alanine amidase compare
CCNA_02892 -1.7 -1.3 hypothetical protein compare
CCNA_01968 -1.6 -1.1 pentapeptide repeats containing protein compare
CCNA_02645 -1.6 -2.0 S-adenosyl-methyltransferase MraW compare
CCNA_01226 -1.6 -7.5 hypothetical protein compare
CCNA_00950 -1.6 -6.5 flagellar M-ring protein FliF compare
CCNA_01430 -1.6 -2.6 hypothetical protein compare
CCNA_03872 -1.6 -4.8 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase compare
CCNA_02848 -1.6 -4.5 heme chaperone-apocytochrome heme-lyase compare
CCNA_00252 -1.6 -7.4 multimodular transpeptidase-transglycosylase PbpX compare
CCNA_00134 -1.6 -4.0 surface protein compare
CCNA_03871 -1.6 -1.9 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
CCNA_00273 -1.5 -0.9 peptide deformylase compare
CCNA_03702 -1.5 -2.4 SSU ribosomal protein S1P compare
CCNA_02064 -1.5 -1.5 UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase compare
CCNA_03026 -1.5 -4.4 two-component response regulator petR compare
CCNA_01130 -1.5 -3.7 flagellar biosynthesis protein FliR compare
CCNA_03786 -1.5 -2.9 heme chaperone heme-lyase compare
CCNA_01060 -1.5 -2.0 type I protein secretion ATP-binding protein RsaD compare
CCNA_01497 -1.5 -4.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare
CCNA_03683 -1.5 -2.6 maleylpyruvate isomerase compare
CCNA_00893 -1.4 -2.3 helix-turn-helix DNA-binding protein compare
CCNA_00292 -1.4 -3.1 phosphate transport system permease protein pstC compare
CCNA_03273 -1.4 -6.2 hypothetical protein compare
CCNA_03782 -1.4 -1.8 cytochrome c biogenesis ATP-binding export protein CcmA compare
CCNA_00671 -1.4 -4.1 ABC-type polysaccharide/polyol phosphate export system, permease component compare
CCNA_03609 -1.4 -6.5 outer membrane protein compare
CCNA_01817 -1.4 -4.0 nitrogen assimilation regulatory protein ntrX compare
CCNA_03861 -1.4 -2.6 pyridoxal 5'-phosphate dependent enzyme class III compare
CCNA_01120 -1.3 -1.9 hypothetical protein compare
CCNA_02346 -1.3 -3.4 arabinose-5-phosphate isomerase compare
CCNA_02320 -1.3 -4.2 2'-deoxycytidine 5'-triphosphate deaminase compare
CCNA_03201 -1.3 -7.7 adenylosuccinate synthetase compare
CCNA_00001 -1.3 -5.5 ATP/GTP-binding protein compare
CCNA_00512 -1.3 -4.3 GTP-binding protein, probable translation factor compare
CCNA_03726 -1.2 -3.5 3-amino-5-hydroxybenzoic acid synthase family compare
CCNA_R0010 -1.2 -4.9 tRNA-Arg compare
CCNA_03542 -1.2 -3.5 hypothetical protein compare
CCNA_00641 -1.2 -2.4 hypothetical protein compare
CCNA_01131 -1.2 -3.6 flagellar biosynthesis protein FlhB compare
CCNA_01638 -1.2 -4.9 beta-lactamase family protein compare
CCNA_02062 -1.2 -3.0 DNA repair protein recN compare
CCNA_03651 -1.1 -2.1 ATP-dependent nuclease subunit B compare
CCNA_00296 -1.1 -5.0 phosphate regulon response regulator PhoB compare
CCNA_00747 -1.1 -4.5 cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF compare
CCNA_00057 -1.1 -0.9 glycoprotease family protein compare
CCNA_01123 -1.1 -5.4 peptide chain release factor RF-3 compare
CCNA_01896 -1.1 -1.2 hypothetical protein compare
CCNA_00951 -1.1 -2.9 flagellar motor switch protein FliG compare
CCNA_02704 -1.0 -2.0 NADP-dependent malic enzyme compare
CCNA_03114 -1.0 -1.9 hypothetical protein compare
CCNA_01442 -1.0 -1.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
CCNA_03878 -1.0 -1.2 ferrochelatase compare
CCNA_03788 -1.0 -1.8 thiol:disulfide interchange protein tlpA compare
CCNA_01844 -1.0 -3.7 DNA integration/recombination/inversion protein compare
CCNA_01407 -1.0 -1.9 hypothetical protein compare
CCNA_01061 -1.0 -2.7 type I secretion adaptor protein RsaE compare
CCNA_01955 -1.0 -4.6 zinc metalloprotease compare
CCNA_01275 -1.0 -1.4 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase compare
CCNA_02116 -1.0 -3.9 hypothetical protein compare
CCNA_02252 -1.0 -3.9 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_01002 -1.0 -1.7 flagellar biosyntheis protein FliP compare
CCNA_02934 -1.0 -4.8 hypothetical protein compare
CCNA_03275 -1.0 -1.7 hypothetical protein compare
CCNA_00044 -1.0 -2.0 ribosome maturation protein RimP compare
CCNA_01171 -1.0 -5.0 histidine phosphotransferase ShpA compare
CCNA_03704 -1.0 -0.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
CCNA_03591 -1.0 -3.3 anti-anti sigma factor/receiver protein PhyR compare
CCNA_02344 -1.0 -1.0 phosphoglycerate mutase compare
CCNA_02572 -1.0 -4.0 adenylosuccinate lyase compare
CCNA_03354 -0.9 -2.9 5-formyltetrahydrofolate cyclo-ligase compare
CCNA_R0037 -0.9 -0.5 tRNA-Glu compare
CCNA_01003 -0.9 -2.4 flagellar biosynthesis protein FliO compare
CCNA_03021 -0.9 -0.8 hypothetical protein compare
CCNA_02488 -0.9 -3.3 acetate/3-ketoacid CoA transferase, subunit A compare
CCNA_02469 -0.9 -4.9 protein hipA compare
CCNA_03135 -0.9 -2.7 flagellum-specific ATP synthase fliL compare
CCNA_01552 -0.9 -2.9 polar localization protein TipN compare
CCNA_03101 -0.9 -1.8 site-specific tyrosine recombinase XerD compare
CCNA_01893 -0.9 -2.5 SnoaL-like domain protein compare
CCNA_03983 -0.9 -1.9 HicA-related toxin-antitoxin protein compare
CCNA_02631 -0.9 -2.0 P-loop NTPase-related protein compare
CCNA_02490 -0.8 -2.1 3-ketoacyl-CoA thiolase compare
CCNA_00264 -0.8 -2.7 C4-dicarboxylate transport protein compare
CCNA_01474 -0.8 -2.0 cytochrome cbb3 oxidase maturation protein ccoS compare
CCNA_02251 -0.8 -1.7 methylglutaconyl-CoA hydratase compare
CCNA_01875 -0.8 -4.4 acyl-CoA dehydrogenase, short-chain specific compare
CCNA_01909 -0.8 -5.2 ABC transporter substrate-binding protein compare
CCNA_00588 -0.8 -2.2 SapA domain protein compare
CCNA_02289 -0.8 -2.2 MarR/EmrR family transcriptional regulator compare
CCNA_02449 -0.8 -3.0 hypothetical protein compare
CCNA_02552 -0.8 -1.5 ATP-dependent Clp protease adaptor protein ClpS compare
CCNA_00952 -0.8 -2.2 flagellar assembly protein FlbE/FliH compare
CCNA_03013 -0.8 -3.0 alkyl hydroperoxide reductase subunit F compare
CCNA_00011 -0.8 -2.3 chaperone protein DnaJ compare
CCNA_01693 -0.8 -3.0 LysR-family transcriptional regulator compare
CCNA_00137 -0.8 -4.7 hybrid two-component histidine kinase/receiver protein ShkA compare
CCNA_01515 -0.8 -4.4 C4-dicarboxylate transporter large subunit compare
CCNA_02847 -0.8 -2.3 cytochrome c-type biogenesis protein ccmH compare
CCNA_00956 -0.8 -3.0 flagellar biosynthesis protein FlhA compare
CCNA_03652 -0.8 -2.7 ATP-dependent nuclease subunit A compare
CCNA_02234 -0.7 -2.7 EF hand domain protein compare
CCNA_00478 -0.7 -3.9 hypothetical protein compare
CCNA_01162 -0.7 -5.5 beta-D-glucoside glucohydrolase compare
CCNA_01270 -0.7 -1.1 hypothetical protein compare
CCNA_02926 -0.7 -1.8 hypothetical protein compare
CCNA_01890 -0.7 -4.5 enoyl-CoA hydratase/isomerase family protein compare
CCNA_00049 -0.7 -1.8 HTH transcriptional regulator compare
CCNA_03767 -0.7 -0.5 SSU ribosomal protein S16P compare
CCNA_03942 -0.7 -2.4 hypothetical protein compare
CCNA_01805 -0.7 -1.0 dihydrolipoamide dehydrogenase compare
CCNA_01845 -0.7 -2.0 two-component response regulator protein compare
CCNA_03987 -0.7 -1.5 hypothetical protein compare
CCNA_02487 -0.7 -3.5 4-hydroxybenzoate 3-monooxygenase compare
CCNA_00519 -0.7 -3.6 hypothetical protein compare
CCNA_01889 -0.7 -3.8 long-chain-fatty-acid--CoA ligase compare
CCNA_01581 -0.7 -1.4 hypothetical protein compare
CCNA_02532 -0.7 -2.1 hypothetical protein compare
CCNA_02278 -0.7 -0.5 hypothetical protein compare
CCNA_02468 -0.7 -2.6 hypothetical protein compare
CCNA_01675 -0.7 -0.9 outer membrane protein compare
CCNA_02250 -0.7 -3.3 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_00240 -0.7 -1.1 PTS system, IIA component compare
CCNA_01876 -0.7 -3.5 oxidoreductase compare
CCNA_00102 -0.7 -3.6 hypothetical protein compare
CCNA_02942 -0.7 -1.9 nucleoside-diphosphate-sugar epimerase compare
CCNA_00299 -0.7 -4.1 phosphoribosylamine--glycine ligase compare
CCNA_01216 -0.7 -4.7 phosphohydrolase, Icc family compare
CCNA_03783 -0.7 -0.6 cytochrome c biogenesis ABC transporter permease component CcmB compare
CCNA_03588 -0.7 -3.1 two-component sensor histidine kinase PhyK compare
CCNA_00257 -0.7 -3.0 adenosylhomocysteinase compare
CCNA_01197 -0.7 -0.8 hypothetical protein compare
CCNA_01883 -0.7 -3.6 acyl-CoA dehydrogenase compare
CCNA_01837 -0.7 -3.2 transposase, IS30 family compare
CCNA_00189 -0.6 -1.9 zinc-finger domain protein compare
CCNA_03516 -0.6 -1.2 protoheme IX farnesyltransferase coxE compare
CCNA_00255 -0.6 -3.1 esterase compare
CCNA_01242 -0.6 -3.5 amino acid permease compare
CCNA_01585 -0.6 -4.0 TonB-dependent receptor compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 Δfur in stress experiments

For stress CHIR-090 across organisms