Experiment set1IT032 for Pseudomonas simiae WCS417

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
PS417_08125 -4.4 -2.1 prephenate dehydratase compare
PS417_23545 -3.5 -6.3 gamma-glutamyl kinase compare
PS417_25720 -2.8 -10.7 anthranilate synthase component II compare
PS417_18585 -2.8 -8.4 3-isopropylmalate dehydrogenase compare
PS417_24745 -2.7 -4.7 gamma-glutamyl phosphate reductase compare
PS417_18560 -2.7 -14.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01605 -2.6 -2.6 phosphoglycerate mutase compare
PS417_25725 -2.6 -14.1 anthranilate synthase component I compare
PS417_17505 -2.5 -6.4 LuxR family transcriptional regulator compare
PS417_24155 -2.5 -3.8 ATP-binding protein compare
PS417_18600 -2.5 -4.8 isopropylmalate isomerase compare
PS417_01575 -2.5 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_16570 -2.5 -12.1 isocitrate lyase compare
PS417_18595 -2.5 -4.1 3-isopropylmalate dehydratase compare
PS417_27040 -2.5 -5.0 3-phosphoglycerate dehydrogenase compare
PS417_01565 -2.4 -9.0 imidazole glycerol phosphate synthase compare
PS417_23800 -2.4 -10.5 ketol-acid reductoisomerase compare
PS417_26740 -2.3 -9.2 homoserine acetyltransferase compare
PS417_17415 -2.3 -6.9 histidine kinase compare
PS417_16465 -2.3 -12.1 sirohydrochlorin ferrochelatase compare
PS417_04415 -2.3 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_17420 -2.3 -9.7 ethanol oxidation regulatory protein ercA (from data) compare
PS417_26745 -2.3 -7.4 methionine biosynthesis protein MetW compare
PS417_04420 -2.3 -10.2 histidinol dehydrogenase compare
PS417_23110 -2.2 -8.5 2-isopropylmalate synthase compare
PS417_17425 -2.2 -7.8 hypothetical protein compare
PS417_26730 -2.2 -1.8 pyrroline-5-carboxylate reductase compare
PS417_26890 -2.2 -6.8 dihydroxy-acid dehydratase compare
PS417_23810 -2.2 -10.9 acetolactate synthase 3 catalytic subunit compare
PS417_01855 -2.2 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_12290 -2.1 -11.4 sulfite reductase compare
PS417_00180 -2.1 -3.0 tryptophan synthase subunit alpha compare
PS417_25940 -2.1 -8.9 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_09470 -2.1 -2.2 hypothetical protein compare
PS417_23805 -2.1 -6.1 acetolactate synthase 3 regulatory subunit compare
PS417_25715 -2.1 -6.2 anthranilate phosphoribosyltransferase compare
PS417_21750 -2.1 -13.9 acetyl-CoA synthetase compare
PS417_17435 -2.1 -15.3 dehydrogenase compare
PS417_17490 -2.0 -3.1 ABC transporter ATP-binding protein compare
PS417_27195 -2.0 -2.3 N-acetylglutamate synthase compare
PS417_13510 -2.0 -2.3 polyketide cyclase compare
PS417_17480 -2.0 -8.1 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_17495 -2.0 -10.0 multidrug ABC transporter permease compare
PS417_17450 -2.0 -6.5 amino acid ABC transporter substrate-binding protein compare
PS417_20985 -2.0 -4.3 porin compare
PS417_05595 -2.0 -9.0 ornithine carbamoyltransferase compare
PS417_20610 -1.9 -2.4 hypothetical protein compare
PS417_26040 -1.9 -6.9 malate synthase compare
PS417_08205 -1.9 -6.3 acetyltransferase compare
PS417_01570 -1.9 -4.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_02005 -1.9 -9.7 glutamate synthase compare
PS417_08225 -1.9 -5.2 acetolactate synthase compare
PS417_17485 -1.8 -6.0 membrane protein compare
PS417_02000 -1.8 -11.7 glutamate synthase compare
PS417_08195 -1.8 -7.7 hypothetical protein compare
PS417_20665 -1.8 -8.9 hypothetical protein compare
PS417_25920 -1.8 -7.0 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_17455 -1.8 -4.2 cytochrome C compare
PS417_00185 -1.7 -6.4 tryptophan synthase subunit beta compare
PS417_02510 -1.7 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01850 -1.7 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18530 -1.7 -5.5 O-succinylhomoserine sulfhydrylase compare
PS417_23995 -1.6 -1.4 preprotein translocase subunit SecG compare
PS417_04380 -1.6 -2.9 ABC transporter permease compare
PS417_06245 -1.6 -2.7 zinc metallopeptidase RseP compare
PS417_25930 -1.6 -7.7 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_08730 -1.6 -2.8 cytochrome C compare
PS417_27875 -1.6 -7.7 histidine kinase compare
PS417_08230 -1.6 -2.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_01710 -1.5 -5.2 histidine utilization repressor compare
PS417_24835 -1.5 -4.6 hypothetical protein compare
PS417_01560 -1.5 -2.9 imidazoleglycerol-phosphate dehydratase compare
PS417_08245 -1.5 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_01580 -1.5 -2.3 imidazole glycerol phosphate synthase compare
PS417_21035 -1.4 -9.0 multidrug transporter compare
PS417_23775 -1.4 -3.5 exodeoxyribonuclease V subunit beta compare
PS417_22450 -1.3 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_27795 -1.3 -1.5 orotate phosphoribosyltransferase compare
PS417_15875 -1.3 -2.9 LuxR family transcriptional regulator compare
PS417_05840 -1.2 -3.9 LuxR family transcriptional regulator compare
PS417_24765 -1.2 -4.3 membrane protein compare
PS417_23770 -1.2 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_02225 -1.2 -2.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_07640 -1.2 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_17780 -1.1 -1.3 Ais protein compare
PS417_26995 -1.1 -5.8 phosphoserine phosphatase compare
PS417_20160 -1.1 -3.5 cysteine synthase compare
PS417_01290 -1.1 -2.2 ADP-ribose diphosphatase compare
PS417_17470 -1.1 -3.2 LuxR family transcriptional regulator compare
PS417_14940 -1.1 -2.3 LysR family transcriptional regulator compare
PS417_27815 -1.1 -2.1 hypothetical protein compare
PS417_02415 -1.1 -2.5 phosphoserine phosphatase compare
PS417_12855 -1.1 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_16490 -1.1 -2.7 cell division protein FtsK compare
PS417_04340 -1.1 -4.4 ribosome hibernation promoting factor HPF compare
PS417_04860 -1.1 -5.7 ATPase compare
PS417_27435 -1.0 -4.8 polyphosphate kinase compare
PS417_19965 -1.0 -6.9 histidine kinase compare
PS417_20620 -1.0 -3.4 glycosyl transferase family 2 compare
PS417_27870 -1.0 -3.8 ATP-dependent DNA helicase RecG compare
PS417_26755 -1.0 -1.4 nucleoside-triphosphate diphosphatase compare
PS417_16555 -1.0 -1.5 cupin compare
PS417_12310 -1.0 -5.5 methionine synthase compare
PS417_06710 -1.0 -2.1 beta-ketoadipyl CoA thiolase compare
PS417_27035 -1.0 -3.2 FAD-linked oxidase compare
PS417_06375 -1.0 -0.9 deoxycytidine triphosphate deaminase compare
PS417_19335 -1.0 -2.9 isochorismatase compare
PS417_25710 -1.0 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_08045 -1.0 -1.9 uracil permease compare
PS417_18445 -0.9 -1.9 glycerol-3-phosphatase compare
PS417_23900 -0.9 -5.1 poly(A) polymerase compare
PS417_08685 -0.9 -2.3 flagellar hook-length control protein FliK compare
PS417_17500 -0.9 -2.4 sulfurtransferase compare
PS417_22520 -0.9 -2.3 histidine kinase compare
PS417_21210 -0.9 -3.0 amidotransferase compare
PS417_15750 -0.9 -1.9 protease compare
PS417_26985 -0.9 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_05025 -0.9 -2.3 maleylacetoacetate isomerase compare
PS417_10695 -0.9 -2.3 decarboxylase compare
PS417_15510 -0.9 -1.8 hypothetical protein compare
PS417_13800 -0.9 -1.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_21705 -0.9 -3.9 arginine N-succinyltransferase compare
PS417_27300 -0.9 -1.2 cell division protein ZapA compare
PS417_09725 -0.9 -5.3 transporter compare
PS417_08250 -0.8 -2.2 competence protein ComEA compare
PS417_08200 -0.8 -2.1 hypothetical protein compare
PS417_05445 -0.8 -1.5 DNA mismatch repair protein MutT compare
PS417_27010 -0.8 -5.4 threonine dehydratase compare
PS417_00755 -0.8 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_15285 -0.8 -1.1 type VI secretion protein compare
PS417_17980 -0.8 -1.3 ABC transporter permease compare
PS417_01950 -0.8 -3.4 malate dehydrogenase compare
PS417_26510 -0.8 -4.5 5,10-methylenetetrahydrofolate reductase compare
PS417_17460 -0.8 -4.8 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) compare
PS417_06895 -0.8 -2.9 DNA-binding protein compare
PS417_04595 -0.8 -2.4 cell division protein MraZ compare
PS417_21360 -0.8 -1.2 termination factor Rho compare
PS417_11440 -0.8 -1.9 hypothetical protein compare
PS417_21425 -0.8 -1.4 4-amino-4-deoxychorismate lyase compare
PS417_00960 -0.7 -1.4 transcriptional regulator compare
PS417_05065 -0.7 -1.9 hypothetical protein compare
PS417_17475 -0.7 -3.8 histidine kinase compare
PS417_26470 -0.7 -1.1 cytochrome C compare
PS417_22445 -0.7 -1.6 ATP-dependent DNA helicase RuvB compare
PS417_20125 -0.7 -2.9 phosphoribosylglycinamide formyltransferase compare
PS417_10220 -0.7 -2.6 hypothetical protein compare
PS417_00030 -0.7 -1.2 hypothetical protein compare
PS417_13305 -0.7 -1.1 hypothetical protein compare
PS417_22305 -0.7 -2.5 histidine kinase compare
PS417_24620 -0.7 -1.4 hypothetical protein compare
PS417_27305 -0.7 -3.0 5-formyltetrahydrofolate cyclo-ligase compare
PS417_00995 -0.7 -1.1 alpha/beta hydrolase compare
PS417_03300 -0.7 -2.5 alanine acetyltransferase compare
PS417_20645 -0.7 -5.2 membrane protein compare
PS417_06600 -0.7 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_25815 -0.7 -2.1 magnesium transporter ApaG compare
PS417_13165 -0.7 -1.4 peroxidase compare
PS417_27535 -0.7 -5.2 chemotaxis protein CheY compare
PS417_07995 -0.7 -3.4 LOG family protein compare
PS417_22375 -0.6 -0.8 cold-shock protein compare
PS417_23725 -0.6 -1.5 methylmalonate-semialdehyde dehydrogenase compare
PS417_21510 -0.6 -1.4 histidine kinase compare
PS417_01590 -0.6 -1.1 polysaccharide deacetylase compare
PS417_19605 -0.6 -1.1 hypothetical protein compare
PS417_04410 -0.6 -0.9 hypothetical protein compare
PS417_28170 -0.6 -2.0 transcriptional regulator compare
PS417_11885 -0.6 -1.9 Inositol transport system sugar-binding protein (from data) compare
PS417_04080 -0.6 -1.9 peptide ABC transporter substrate-binding protein compare
PS417_19480 -0.6 -3.0 aminopeptidase compare
PS417_24810 -0.6 -3.7 aldehyde dehydrogenase compare
PS417_15095 -0.6 -1.9 hypothetical protein compare
PS417_00295 -0.6 -3.3 hypothetical protein compare
PS417_02150 -0.6 -3.9 potassium/proton antiporter compare
PS417_27515 -0.6 -3.0 heme biosynthesis protein HemY compare
PS417_00845 -0.6 -1.0 transcriptional regulator compare
PS417_18885 -0.6 -1.1 GntR family transcriptional regulator compare
PS417_20655 -0.6 -4.0 group 1 glycosyl transferase compare
PS417_00650 -0.6 -0.8 LysR family transcriptional regulator compare
PS417_18250 -0.6 -1.4 chemotaxis protein compare
PS417_04090 -0.6 -2.0 hypothetical protein compare
PS417_17885 -0.6 -2.3 moaF compare
PS417_10535 -0.6 -3.0 hypothetical protein compare
PS417_28110 -0.6 -2.0 transglycosylase compare
PS417_02465 -0.6 -2.3 carbohydrate kinase compare
PS417_08320 -0.6 -1.2 metal-chelation protein CHAD compare
PS417_07170 -0.6 -2.7 hypothetical protein compare
PS417_06370 -0.6 -1.0 cold-shock protein compare
PS417_24555 -0.6 -1.7 polyribonucleotide nucleotidyltransferase compare
PS417_27585 -0.6 -0.9 diaminopimelate epimerase compare
PS417_06200 -0.6 -2.8 protein-PII uridylyltransferase compare
PS417_03385 -0.6 -1.0 flavin reductase compare
PS417_18090 -0.6 -1.9 iron ABC transporter compare
PS417_09800 -0.6 -1.6 cytosine deaminase compare
PS417_19075 -0.6 -2.8 ABC transporter ATP-binding protein compare
PS417_13990 -0.6 -1.6 LysR family transcriptional regulator compare
PS417_20825 -0.6 -2.0 drug:proton antiporter compare
PS417_09440 -0.6 -1.4 MerR family transcriptional regulator compare
PS417_03655 -0.6 -2.2 short-chain dehydrogenase compare
PS417_11520 -0.6 -1.3 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_10025 -0.5 -0.8 bacteriophage lambda NinG family protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Sodium Fumarate dibasic in Pseudomonas simiae WCS417

For carbon source Sodium Fumarate dibasic across organisms