Experiment set1IT032 for Variovorax sp. OAS795

Compare to:

L-Histidine carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS03440 -7.5 -6.9 formimidoylglutamate deiminase conserved
ABID97_RS07430 -6.5 -8.4 pantoate--beta-alanine ligase compare
ABID97_RS03425 -6.3 -8.6 urocanate hydratase conserved
ABID97_RS16595 -6.2 -4.3 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS20615 -6.0 -4.9 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS15380 -5.9 -12.0 nitrite/sulfite reductase compare
ABID97_RS07435 -5.9 -7.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS03410 -5.8 -3.1 ABC transporter ATP-binding protein compare
ABID97_RS03445 -5.7 -11.0 N-formylglutamate deformylase conserved
ABID97_RS03435 -5.6 -6.6 imidazolonepropionase conserved
ABID97_RS06575 -5.4 -7.4 trehalose-phosphatase compare
ABID97_RS16535 -5.4 -3.7 arginine/lysine/ornithine decarboxylase compare
ABID97_RS03420 -5.3 -3.2 histidine ammonia-lyase compare
ABID97_RS22760 -5.3 -3.5 TetR/AcrR family transcriptional regulator compare
ABID97_RS07000 -5.2 -5.1 threonine ammonia-lyase, biosynthetic compare
ABID97_RS25525 -5.2 -3.2 LacI family DNA-binding transcriptional regulator compare
ABID97_RS16915 -5.0 -9.6 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS15375 -4.9 -4.2 DUF934 domain-containing protein compare
ABID97_RS14095 -4.9 -8.2 PAS domain S-box protein compare
ABID97_RS07845 -4.9 -12.2 ABC transporter ATP-binding protein compare
ABID97_RS07840 -4.9 -10.4 branched-chain amino acid ABC transporter permease compare
ABID97_RS10355 -4.9 -8.3 FadR/GntR family transcriptional regulator compare
ABID97_RS03400 -4.8 -8.0 ABC transporter substrate-binding protein compare
ABID97_RS05260 -4.8 -1.5 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS07850 -4.7 -8.8 ABC transporter ATP-binding protein compare
ABID97_RS09405 -4.6 -1.4 xanthine dehydrogenase family protein subunit M compare
ABID97_RS13860 -4.6 -4.1 hypothetical protein compare
ABID97_RS03405 -4.5 -11.7 ABC transporter permease compare
ABID97_RS16600 -4.5 -9.1 CysB family HTH-type transcriptional regulator compare
ABID97_RS14260 -4.4 -7.4 FtsH protease activity modulator HflK compare
ABID97_RS07415 -4.4 -16.7 quinolinate synthase NadA compare
ABID97_RS10885 -4.4 -5.2 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS17590 -4.3 -13.8 endopeptidase La compare
ABID97_RS14265 -4.3 -7.7 protease modulator HflC compare
ABID97_RS09180 -4.3 -2.9 DNA polymerase I compare
ABID97_RS07410 -4.2 -7.7 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS08425 -4.2 -4.1 tryptophan synthase subunit alpha compare
ABID97_RS22135 -4.1 -1.3 LysR family transcriptional regulator compare
ABID97_RS05250 -4.1 -7.9 anthranilate synthase component I compare
ABID97_RS25345 -4.1 -9.3 transporter associated domain-containing protein compare
ABID97_RS16565 -4.0 -12.7 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS24920 -4.0 -2.1 Holliday junction branch migration protein RuvA compare
ABID97_RS23425 -4.0 -2.4 tRNA-Pro compare
ABID97_RS15365 -4.0 -5.0 sulfate adenylyltransferase subunit CysD compare
ABID97_RS12140 -3.9 -9.3 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS01565 -3.9 -12.0 DNA starvation/stationary phase protection protein compare
ABID97_RS13450 -3.9 -2.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS15505 -3.8 -1.2 ATP-binding cassette domain-containing protein compare
ABID97_RS07405 -3.8 -13.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS23170 -3.7 -3.2 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
ABID97_RS02510 -3.6 -22.6 NADP-dependent malic enzyme compare
ABID97_RS21945 -3.6 -4.8 hemolysin family protein compare
ABID97_RS16910 -3.6 -9.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS10705 -3.5 -4.4 H-NS histone family protein compare
ABID97_RS03110 -3.5 -7.3 helix-turn-helix transcriptional regulator compare
ABID97_RS22625 -3.5 -14.9 HAMP domain-containing sensor histidine kinase compare
ABID97_RS21770 -3.5 -11.5 aminopeptidase N compare
ABID97_RS05775 -3.5 -15.4 catalase compare
ABID97_RS25015 -3.5 -4.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS03125 -3.5 -9.2 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS20405 -3.5 -6.4 MarR family transcriptional regulator compare
ABID97_RS02600 -3.4 -3.4 homoserine O-acetyltransferase compare
ABID97_RS08570 -3.4 -6.6 ferrous iron transporter B compare
ABID97_RS13990 -3.4 -3.3 amino acid aminotransferase compare
ABID97_RS15370 -3.4 -10.3 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS24040 -3.4 -2.0 MarR family transcriptional regulator compare
ABID97_RS06345 -3.3 -3.2 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS15465 -3.3 -12.4 sulfate ABC transporter substrate-binding protein compare
ABID97_RS16290 -3.3 -7.6 protein-glutamate O-methyltransferase CheR compare
ABID97_RS05275 -3.3 -2.0 anthranilate phosphoribosyltransferase compare
ABID97_RS22620 -3.3 -9.5 response regulator transcription factor compare
ABID97_RS19930 -3.3 -1.4 DUF2160 domain-containing protein compare
ABID97_RS15490 -3.3 -6.6 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS17270 -3.2 -7.9 ATP-binding protein compare
ABID97_RS05925 -3.2 -12.8 LysR substrate-binding domain-containing protein compare
ABID97_RS19065 -3.2 -6.2 GntR family transcriptional regulator compare
ABID97_RS06190 -3.2 -6.0 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS21150 -3.1 -6.8 FAD-dependent oxidoreductase compare
ABID97_RS02460 -3.1 -16.1 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS17600 -3.1 -2.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS04760 -3.1 -1.9 SPOR domain-containing protein compare
ABID97_RS05020 -3.1 -1.3 hypothetical protein compare
ABID97_RS04480 -3.0 -2.1 magnesium/cobalt transporter CorA compare
ABID97_RS14080 -3.0 -14.6 M3 family metallopeptidase compare
ABID97_RS24170 -3.0 -4.8 ATP-binding protein compare
ABID97_RS20095 -3.0 -2.0 DNA topoisomerase IV subunit B compare
ABID97_RS08250 -3.0 -5.8 RluA family pseudouridine synthase compare
ABID97_RS04505 -3.0 -2.8 ferric iron uptake transcriptional regulator compare
ABID97_RS23455 -3.0 -2.9 hypothetical protein compare
ABID97_RS14090 -2.9 -1.2 response regulator transcription factor compare
ABID97_RS02060 -2.9 -11.6 TonB-dependent siderophore receptor compare
ABID97_RS25085 -2.9 -3.9 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS17265 -2.9 -2.9 two-component system response regulator OmpR compare
ABID97_RS28635 -2.9 -5.5 IclR family transcriptional regulator compare
ABID97_RS23915 -2.9 -3.9 heme o synthase compare
ABID97_RS14625 -2.9 -4.9 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS27720 -2.9 -2.0 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS11640 -2.8 -9.3 TetR family transcriptional regulator compare
ABID97_RS13570 -2.7 -5.2 IclR family transcriptional regulator compare
ABID97_RS02455 -2.7 -3.8 nucleotidyltransferase family protein compare
ABID97_RS14665 -2.7 -2.6 UvrD-helicase domain-containing protein compare
ABID97_RS14925 -2.7 -9.1 arginyltransferase compare
ABID97_RS15360 -2.7 -6.2 GTP-binding protein compare
ABID97_RS01570 -2.7 -7.5 LysR substrate-binding domain-containing protein compare
ABID97_RS14850 -2.7 -3.6 P-II family nitrogen regulator compare
ABID97_RS07500 -2.7 -2.5 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS05280 -2.6 -1.8 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS07440 -2.6 -11.8 L-aspartate oxidase compare
ABID97_RS05095 -2.6 -1.1 DUF4150 domain-containing protein compare
ABID97_RS24500 -2.6 -6.7 oxalyl-CoA decarboxylase compare
ABID97_RS07345 -2.6 -4.3 hypothetical protein compare
ABID97_RS14575 -2.6 -9.1 polyphosphate kinase 1 compare
ABID97_RS17895 -2.6 -7.1 transcriptional regulator NrdR compare
ABID97_RS07855 -2.5 -2.5 ABC transporter ATP-binding protein compare
ABID97_RS03910 -2.5 -1.7 orotate phosphoribosyltransferase compare
ABID97_RS15100 -2.5 -2.4 helix-turn-helix transcriptional regulator compare
ABID97_RS06605 -2.5 -7.5 LysR substrate-binding domain-containing protein compare
ABID97_RS14305 -2.5 -1.4 arylesterase compare
ABID97_RS05765 -2.5 -1.7 UDP-glucose 4-epimerase GalE compare
ABID97_RS03800 -2.5 -2.4 O-antigen ligase family protein compare
ABID97_RS05755 -2.5 -2.4 glycosyltransferase compare
ABID97_RS08435 -2.4 -1.7 phosphoribosylanthranilate isomerase compare
ABID97_RS04765 -2.4 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS15470 -2.4 -2.4 NADPH-dependent FMN reductase compare
ABID97_RS08220 -2.4 -9.8 phosphoenolpyruvate carboxylase compare
ABID97_RS23645 -2.4 -1.7 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS18255 -2.3 -1.4 hypothetical protein compare
ABID97_RS07260 -2.3 -5.5 TIM44-like domain-containing protein compare
ABID97_RS07170 -2.3 -7.9 hemolysin family protein compare
ABID97_RS27780 -2.3 -1.3 efflux RND transporter periplasmic adaptor subunit compare
ABID97_RS04960 -2.3 -1.0 ATP-binding protein compare
ABID97_RS11170 -2.3 -4.7 GntR family transcriptional regulator compare
ABID97_RS18445 -2.3 -1.4 helix-turn-helix transcriptional regulator compare
ABID97_RS23450 -2.2 -4.9 MBOAT family protein compare
ABID97_RS21385 -2.2 -3.6 phosphomannomutase/phosphoglucomutase compare
ABID97_RS16690 -2.2 -3.6 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS02135 -2.2 -6.2 GspH/FimT family pseudopilin compare
ABID97_RS17850 -2.1 -0.9 tetratricopeptide repeat protein compare
ABID97_RS02275 -2.1 -5.5 recombinase RecA compare
ABID97_RS19630 -2.1 -0.9 TRAP transporter small permease compare
ABID97_RS27370 -2.1 -1.1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
ABID97_RS14160 -2.1 -5.7 cell division protein ZapE compare
ABID97_RS16580 -2.1 -2.6 leucyl aminopeptidase compare
ABID97_RS15665 -2.1 -5.7 [protein-PII] uridylyltransferase compare
ABID97_RS25580 -2.1 -1.3 nucleotidyltransferase family protein compare
ABID97_RS28990 -2.1 -4.7 aspartate 1-decarboxylase compare
ABID97_RS04825 -2.1 -5.9 hypothetical protein compare
ABID97_RS23185 -2.1 -2.0 ABC transporter ATP-binding protein compare
ABID97_RS00255 -2.1 -10.2 type IV pilus twitching motility protein PilT compare
ABID97_RS16210 -2.1 -1.6 cytochrome-c oxidase, cbb3-type subunit III compare
ABID97_RS20610 -2.1 -5.2 DNA-binding protein YbiB compare
ABID97_RS20695 -2.0 -10.0 metalloprotease PmbA compare
ABID97_RS16740 -2.0 -1.9 YebC/PmpR family DNA-binding transcriptional regulator compare
ABID97_RS27365 -2.0 -0.8 nitrogen assimilation transcriptional regulator NAC compare
ABID97_RS08445 -2.0 -8.1 FimV/HubP family polar landmark protein compare
ABID97_RS14975 -2.0 -3.4 hypothetical protein compare
ABID97_RS05750 -2.0 -2.6 glycosyltransferase compare
ABID97_RS02120 -1.9 -9.9 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS15480 -1.9 -4.7 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS08790 -1.9 -5.9 oligoribonuclease compare
ABID97_RS06275 -1.9 -1.5 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS17970 -1.9 -5.1 protein TolQ compare
ABID97_RS03805 -1.9 -1.0 ATP-binding protein compare
ABID97_RS06600 -1.9 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS02110 -1.9 -10.5 type IV pilus modification protein PilV compare
ABID97_RS12440 -1.9 -8.8 CaiB/BaiF CoA-transferase family protein compare
ABID97_RS27980 -1.9 -1.5 alcohol dehydrogenase catalytic domain-containing protein compare
ABID97_RS06335 -1.9 -13.0 metalloprotease TldD compare
ABID97_RS19020 -1.9 -1.2 2-methylaconitate cis-trans isomerase PrpF compare
ABID97_RS24055 -1.9 -1.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS20020 -1.9 -2.2 LacI family DNA-binding transcriptional regulator compare
ABID97_RS06160 -1.8 -7.1 GTP-binding protein compare
ABID97_RS24595 -1.8 -4.3 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS16450 -1.8 -7.1 anti-sigma factor compare
ABID97_RS06150 -1.8 -6.1 tyrosine recombinase XerC compare
ABID97_RS23220 -1.8 -1.1 glutamate synthase subunit beta compare
ABID97_RS13995 -1.8 -9.7 excinuclease ABC subunit UvrB compare
ABID97_RS17425 -1.8 -8.8 TonB-dependent receptor compare
ABID97_RS12850 -1.8 -1.0 ribulose bisphosphate carboxylase small subunit compare
ABID97_RS16560 -1.8 -7.0 response regulator compare
ABID97_RS23290 -1.8 -7.7 penicillin-binding protein 1A compare
ABID97_RS17200 -1.8 -10.8 ribonuclease R compare
ABID97_RS28415 -1.8 -1.3 CoA transferase compare
ABID97_RS27830 -1.8 -1.7 AMP-binding protein compare
ABID97_RS09955 -1.8 -6.3 exodeoxyribonuclease III compare
ABID97_RS02145 -1.7 -6.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS12155 -1.7 -5.4 glycogen debranching protein GlgX compare
ABID97_RS23435 -1.7 -9.3 type II secretion system F family protein compare
ABID97_RS19220 -1.7 -1.3 DNA polymerase Y family protein compare
ABID97_RS15285 -1.7 -0.9 hypothetical protein compare
ABID97_RS12180 -1.7 -1.7 hypothetical protein compare
ABID97_RS15580 -1.7 -3.6 sulfate ABC transporter permease subunit CysW compare
ABID97_RS02125 -1.7 -12.8 PilC/PilY family type IV pilus protein compare
ABID97_RS01120 -1.7 -0.9 citrate synthase compare
ABID97_RS14200 -1.7 -3.3 pseudouridine synthase compare
ABID97_RS08430 -1.7 -1.1 tryptophan synthase subunit beta compare
ABID97_RS04610 -1.7 -6.1 potassium transporter Kup compare
ABID97_RS24675 -1.6 -3.9 YqgE/AlgH family protein compare
ABID97_RS05850 -1.6 -5.2 TetR/AcrR family transcriptional regulator compare
ABID97_RS03495 -1.6 -7.7 TetR family transcriptional regulator compare


Specific Phenotypes

For 38 genes in this experiment

For carbon source L-Histidine in Variovorax sp. OAS795

For carbon source L-Histidine across organisms