Experiment set1IT032 for Pseudomonas sp. S08-1

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
OH686_14595 -5.9 -4.1 Imidazole glycerol phosphate synthase cyclase subunit compare
OH686_15135 -5.7 -5.5 Anthranilate phosphoribosyltransferase compare
OH686_14580 -5.5 -12.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
OH686_02480 -5.5 -6.5 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
OH686_13885 -5.3 -12.2 argininosuccinate lyase compare
OH686_02475 -5.2 -11.1 Integral membrane sensor signal transduction histidine kinase , glucose catabolism cluster compare
OH686_14590 -5.2 -13.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
OH686_21370 -5.1 -5.0 tRNA-Arg compare
OH686_12425 -5.1 -12.8 tryptophan synthase, beta subunit compare
OH686_11120 -5.0 -12.0 amino-acid N-acetyltransferase compare
OH686_15195 -5.0 -9.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
OH686_10000 -4.9 -17.9 Glutamate synthase [NADPH] small chain compare
OH686_10020 -4.9 -5.8 Shikimate kinase I compare
OH686_12430 -4.8 -13.6 tryptophan synthase, alpha subunit compare
OH686_00475 -4.8 -13.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
OH686_11400 -4.8 -15.6 threonine ammonia-lyase, biosynthetic compare
OH686_10005 -4.8 -29.1 Glutamate synthase [NADPH] large chain compare
OH686_13600 -4.8 -14.9 N-acetylglutamate kinase compare
OH686_04470 -4.7 -17.3 3-isopropylmalate dehydrogenase compare
OH686_14100 -4.7 -17.5 dihydroxy-acid dehydratase compare
OH686_04480 -4.7 -11.3 3-isopropylmalate dehydratase large subunit compare
OH686_11000 -4.6 -18.5 homoserine O-acetyltransferase compare
OH686_04475 -4.6 -8.3 3-isopropylmalate dehydratase small subunit compare
OH686_11700 -4.6 -8.3 Glutaryl-CoA dehydrogenase compare
OH686_03930 -4.6 -13.1 argininosuccinate synthase compare
OH686_08125 -4.5 -14.5 acetolactate synthase, small subunit compare
OH686_02455 -4.4 -11.8 Glucose ABC transporter, ATP-binding subunit compare
OH686_15125 -4.4 -21.1 anthranilate synthase component I compare
OH686_08465 -4.4 -19.3 histidinol-phosphate transaminase compare
OH686_02435 -4.4 -17.5 glucose-6-phosphate dehydrogenase compare
OH686_08130 -4.4 -19.5 acetolactate synthase, large subunit, biosynthetic type compare
OH686_21970 -4.3 -3.0 L,D-transpeptidase compare
OH686_04445 -4.3 -14.5 Phosphoribosylanthranilate isomerase compare
OH686_02460 -4.3 -13.5 Glucose ABC transport system, inner membrane component 2 compare
OH686_15140 -4.3 -20.0 Indole-3-glycerol phosphate synthase compare
OH686_11005 -4.3 -13.8 methionine biosynthesis protein MetW compare
OH686_09445 -4.3 -15.0 ATP phosphoribosyltransferase, regulatory subunit compare
OH686_02490 -4.3 -15.5 phosphogluconate dehydratase compare
OH686_07395 -4.3 -13.8 copper-translocating P-type ATPase compare
OH686_08470 -4.3 -18.3 Histidinol dehydrogenase compare
OH686_02465 -4.2 -16.5 Glucose ABC transport system, inner membrane component 1 compare
OH686_08115 -4.1 -10.7 ketol-acid reductoisomerase compare
OH686_08475 -4.1 -17.3 ATP phosphoribosyltransferase compare
OH686_10160 -4.1 -9.6 Phosphoribosyl-AMP cyclohydrolase compare
OH686_02485 -4.1 -11.9 glucokinase compare
OH686_02470 -4.0 -11.6 ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron) compare
OH686_10820 -4.0 -16.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
OH686_13545 -3.9 -13.9 RidA/YER057c/UK114 superfamily protein compare
OH686_02415 -3.9 -15.3 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
OH686_02425 -3.8 -13.0 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase compare
OH686_11420 -3.7 -13.5 Phosphoserine phosphatase compare
OH686_07585 -3.7 -6.1 3-dehydroquinate dehydratase, type II compare
OH686_16305 -3.6 -7.8 Glutamate 5-kinase / RNA-binding C-terminal domain PUA compare
OH686_04115 -3.6 -2.5 hypothetical protein compare
OH686_02430 -3.6 -3.1 6-phosphogluconolactonase , eukaryotic type compare
OH686_13590 -3.6 -3.4 Orotate phosphoribosyltransferase compare
OH686_17260 -3.5 -7.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
OH686_12485 -3.5 -6.2 Shikimate 5-dehydrogenase I alpha compare
OH686_00660 -3.5 -8.9 Isochorismatase compare
OH686_20405 -3.5 -9.9 ornithine carbamoyltransferase compare
OH686_04415 -3.5 -13.6 O-succinylhomoserine sulfhydrylase compare
OH686_09340 -3.4 -7.6 Gamma-glutamyl phosphate reductase compare
OH686_21330 -3.4 -3.5 aspartate kinase, monofunctional class compare
OH686_10980 -3.4 -4.6 pyrroline-5-carboxylate reductase compare
OH686_20895 -3.3 -3.9 integration host factor, beta subunit compare
OH686_11285 -3.3 -19.2 D-2-hydroxyglutarate dehydrogenase compare
OH686_13800 -3.3 -2.3 diaminopimelate decarboxylase compare
OH686_03470 -3.3 -15.9 Sulfite reductase [NADPH] hemoprotein beta-component compare
OH686_14575 -3.3 -6.7 Imidazoleglycerol-phosphate dehydratase compare
OH686_11225 -3.2 -12.4 5-formyltetrahydrofolate cyclo-ligase compare
OH686_20870 -3.2 -4.4 Chorismate mutase I / Prephenate dehydratase compare
OH686_00120 -3.2 -2.2 NADH-ubiquinone oxidoreductase chain I compare
OH686_17100 -3.1 -2.1 Cell division-associated, ATP-dependent zinc metalloprotease FtsH compare
OH686_00140 -3.1 -3.6 NADH-ubiquinone oxidoreductase chain E compare
OH686_13550 -3.0 -2.1 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase / GTP pyrophosphokinase , (p)ppGpp synthetase II compare
OH686_00285 -3.0 -14.6 Precorrin-2 oxidase or Sirohydrochlorin ferrochelatase activity of CysG / Uroporphyrinogen-III methyltransferase compare
OH686_03640 -2.9 -2.0 ATP-dependent Clp protease, ATP-binding subunit ClpX compare
OH686_09505 -2.9 -2.8 3'-to-5' oligoribonuclease (orn) compare
OH686_21295 -2.9 -4.4 arginine/ornithine succinyltransferase, alpha subunit compare
OH686_00095 -2.9 -5.2 NADH-ubiquinone oxidoreductase chain N compare
OH686_18180 -2.9 -2.0 Murein hydrolase activator NlpD compare
OH686_00145 -2.9 -5.8 NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D compare
OH686_11275 -2.8 -7.8 Exopolyphosphatase compare
OH686_09625 -2.8 -8.0 hypothetical protein compare
OH686_04280 -2.8 -3.6 hypothetical protein compare
OH686_17570 -2.8 -11.2 2-isopropylmalate synthase compare
OH686_08560 -2.8 -10.2 RNase adapter protein RapZ compare
OH686_14435 -2.8 -19.6 Glycosyl transferase, group 1 family protein compare
OH686_00135 -2.8 -4.2 NADH oxidoreductase (quinone), F subunit compare
OH686_09555 -2.8 -13.0 phosphoserine phosphatase SerB compare
OH686_13815 -2.7 -2.6 iron donor protein CyaY compare
OH686_08525 -2.7 -3.6 LPS export ABC transporter periplasmic protein LptC compare
OH686_14280 -2.7 -11.6 thiamine biosynthesis protein ThiS compare
OH686_01680 -2.7 -1.9 2-methylisocitrate dehydratase, Fe/S-dependent compare
OH686_03475 -2.7 -5.5 Oxidoreductase putative compare
OH686_07905 -2.7 -1.9 protein-(glutamine-N5) methyltransferase, release factor-specific compare
OH686_17765 -2.7 -1.9 threonine synthase compare
OH686_17505 -2.7 -6.7 FeS assembly protein IscX compare
OH686_09710 -2.7 -4.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OH686_00130 -2.7 -5.0 NADH dehydrogenase (quinone), G subunit compare
OH686_14385 -2.6 -17.3 UDP-N-acetylglucosamine 2-epimerase compare
OH686_13425 -2.6 -10.6 phosphate ABC transporter, ATP-binding protein compare
OH686_01625 -2.6 -3.5 Nonspecific porin and structural outer membrane protein OprF compare
OH686_13455 -2.6 -11.2 Phosphate regulon metal ion transporter containing CBS domains compare
OH686_14390 -2.6 -16.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
OH686_00115 -2.6 -2.4 NADH-ubiquinone oxidoreductase chain J compare
OH686_13205 -2.5 -17.4 oxaloacetate decarboxylase alpha subunit compare
OH686_02215 -2.5 -2.4 Putative analog of CcoH, COG3198 compare
OH686_10165 -2.5 -5.3 Phosphoribosyl-ATP pyrophosphatase compare
OH686_11705 -2.5 -14.3 Uncharacterized protein compare
OH686_00100 -2.5 -4.7 NADH-ubiquinone oxidoreductase chain M compare
OH686_13200 -2.4 -15.5 acetyl-CoA carboxylase, biotin carboxylase subunit compare
OH686_08365 -2.4 -5.0 Uncharacterized protein YraP compare
OH686_00105 -2.4 -5.8 NADH-ubiquinone oxidoreductase chain L compare
OH686_00150 -2.4 -5.3 NADH-ubiquinone oxidoreductase chain B compare
OH686_14285 -2.4 -13.4 Thiazole synthase compare
OH686_00125 -2.4 -2.3 NADH-ubiquinone oxidoreductase chain H compare
OH686_11110 -2.3 -5.1 glutamate--cysteine ligase compare
OH686_08495 -2.3 -2.7 Phospholipid ABC transporter shuttle protein MlaC compare
OH686_02735 -2.3 -7.0 Flagellar synthesis regulator FleN compare
OH686_08510 -2.3 -2.2 Phospholipid ABC transporter ATP-binding protein MlaF compare
OH686_02205 -2.3 -2.2 cytochrome c oxidase, cbb3-type, subunit III compare
OH686_08500 -2.3 -2.2 outer membrane lipid asymmetry maintenance protein MlaD compare
OH686_16520 -2.2 -11.8 nicotinate-nucleotide diphosphorylase (carboxylating) compare
OH686_09475 -2.2 -4.9 tRNA dimethylallyltransferase compare
OH686_13700 -2.2 -7.4 Putrescine utilization regulator compare
OH686_14425 -2.2 -14.9 glycosyl transferase, group 1 family protein compare
OH686_01780 -2.2 -8.6 L,D-transpeptidase compare
OH686_17525 -2.2 -3.8 Cytoskeleton protein RodZ compare
OH686_12075 -2.1 -2.4 Exodeoxyribonuclease V beta chain compare
OH686_21965 -2.1 -2.4 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
OH686_13410 -2.1 -14.7 Phosphate ABC transporter, substrate-binding protein PstS compare
OH686_17760 -2.1 -2.4 Homoserine dehydrogenase compare
OH686_00155 -2.0 -4.5 NADH ubiquinone oxidoreductase chain A compare
OH686_22870 -2.0 -2.9 integration host factor, alpha subunit compare
OH686_13555 -2.0 -4.3 DNA-directed RNA polymerase, omega subunit compare
OH686_18800 -2.0 -9.5 pyruvate kinase compare
OH686_02195 -2.0 -2.2 cytochrome c oxidase, cbb3-type, subunit II compare
OH686_08505 -1.9 -2.2 Phospholipid ABC transporter permease protein MlaE compare
OH686_09190 -1.9 -10.2 Thiamin-phosphate pyrophosphorylase compare
OH686_13415 -1.9 -12.0 Phosphate ABC transporter, permease protein PstC compare
OH686_07900 -1.9 -7.5 Molybdopterin-synthase adenylyltransferase compare
OH686_21095 -1.9 -4.9 maleylacetoacetate isomerase compare
OH686_17265 -1.9 -9.8 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
OH686_14145 -1.9 -2.8 Uncharacterized ferredoxin-like protein YfhL compare
OH686_20910 -1.9 -2.1 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
OH686_02190 -1.9 -4.2 cytochrome c oxidase, cbb3-type, subunit I compare
OH686_02995 -1.9 -2.5 flagellar biosynthesis anti-sigma factor FlgM compare
OH686_09185 -1.8 -7.2 Hydroxymethylpyrimidine phosphate kinase ThiD compare
OH686_22675 -1.8 -8.7 Heavy metal sensor histidine kinase compare
OH686_07640 -1.8 -2.4 probable sensor/response regulator hybrid compare
OH686_11205 -1.8 -12.8 Xaa-Pro aminopeptidase compare
OH686_22720 -1.8 -2.6 Outer-membrane-phospholipid-binding lipoprotein MlaA compare
OH686_19190 -1.7 -10.3 quinolinate synthetase complex, A subunit compare
OH686_08155 -1.7 -7.4 hypothetical protein compare
OH686_00235 -1.7 -10.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
OH686_20060 -1.7 -2.5 HtrA protease/chaperone protein compare
OH686_22005 -1.7 -9.6 Soluble pyridine nucleotide transhydrogenase compare
OH686_23215 -1.7 -1.9 hypothetical protein compare
OH686_23035 -1.7 -1.5 hypothetical protein' product='hypothetical protein compare
OH686_01165 -1.7 -2.4 hypothetical protein compare
OH686_13790 -1.6 -4.6 Protein of unknown function DUF484 compare
OH686_15890 -1.6 -10.9 Outer membrane channel TolC (OpmH) compare
OH686_14420 -1.6 -7.6 hypothetical protein compare
OH686_21310 -1.6 -5.5 succinylarginine dihydrolase compare
OH686_15065 -1.6 -7.7 Nucleotidyl transferase putative compare
OH686_12250 -1.6 -5.4 Zinc ABC transporter, permease protein ZnuB compare
OH686_16240 -1.5 -9.6 Energy-dependent translational throttle protein EttA compare
OH686_09560 -1.5 -2.4 HAMP domain protein compare
OH686_10915 -1.5 -8.0 glutathione synthase compare
OH686_22050 -1.5 -2.4 MotA/TolQ/ExbB proton channel family protein compare
OH686_19125 -1.5 -5.2 crossover junction endodeoxyribonuclease RuvC compare
OH686_18175 -1.5 -5.7 protein-L-isoaspartate O-methyltransferase compare
OH686_03635 -1.4 -7.3 endopeptidase La compare
OH686_13430 -1.4 -4.9 phosphate transport system regulatory protein PhoU compare
OH686_17405 -1.4 -2.9 Predicted transmembrane protein compare
OH686_13420 -1.4 -9.5 phosphate ABC transporter, permease protein PstA compare
OH686_10320 -1.4 -9.1 Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] compare
OH686_22150 -1.4 -3.7 beta-ketoacyl-acyl-carrier-protein synthase II compare
OH686_17385 -1.4 -7.4 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
OH686_02620 -1.3 -4.5 Cytochrome c heme lyase subunit CcmH compare
OH686_08565 -1.3 -1.2 Phosphocarrier protein, nitrogen regulation associated compare
OH686_18990 -1.3 -1.8 phosphoribosylglycinamide formyltransferase compare
OH686_21305 -1.3 -1.7 succinylglutamate-semialdehyde dehydrogenase compare
OH686_12545 -1.3 -2.3 Lipid A biosynthesis lauroyl acyltransferase compare
OH686_01030 -1.3 -2.2 ABC-type siderophore export system, fused ATPase and permease components compare
OH686_22695 -1.3 -8.0 Copper resistance protein B compare
OH686_15690 -1.3 -5.5 transcriptional regulator NrdR compare
OH686_19640 -1.3 -2.7 DNA recombination-dependent growth factor RdgC compare
OH686_22680 -1.3 -6.0 Copper-sensing two-component system response regulator CusR compare
OH686_20840 -1.3 -7.1 phosphoglycolate phosphatase, bacterial compare
OH686_04585 -1.2 -7.1 Biosynthetic Aromatic amino acid aminotransferase alpha or Aromatic-amino-acid aminotransferase compare
OH686_21570 -1.2 -1.5 Phage recombination protein NinG compare
OH686_12195 -1.2 -2.4 Periplasmic thiol:disulfide interchange protein DsbA compare
OH686_13460 -1.2 -6.1 phosphate regulon sensor kinase PhoR compare
OH686_21960 -1.2 -3.9 repressor LexA compare
OH686_12080 -1.2 -3.9 exodeoxyribonuclease V, gamma subunit compare
OH686_13775 -1.2 -5.6 hypothetical protein compare
OH686_21585 -1.2 -6.0 hypothetical protein compare
OH686_07610 -1.2 -3.9 tRNA-dihydrouridine synthase DusB compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. S08-1 in carbon source experiments

For carbon source D-Glucose across organisms