Experiment set1IT032 for Pseudomonas fluorescens SBW25

Compare to:

Trisodium citrate dihydrate carbon source; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS12975 -5.3 -3.7 DUF934 domain-containing protein compare
PFLU_RS28695 -5.0 -7.7 phosphoglycerate dehydrogenase compare
PFLU_RS01625 -5.0 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS02490 -4.9 -12.1 phosphoserine phosphatase SerB compare
PFLU_RS01605 -4.8 -6.5 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS27370 -4.7 -13.8 anthranilate phosphoribosyltransferase compare
PFLU_RS20575 -4.7 -6.3 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27365 -4.6 -10.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20540 -4.6 -11.4 phosphoribosylanthranilate isomerase compare
PFLU_RS00180 -4.5 -9.2 tryptophan synthase subunit beta compare
PFLU_RS28535 -4.4 -15.5 dihydroxy-acid dehydratase compare
PFLU_RS20580 -4.3 -12.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS04465 -4.3 -12.0 ATP phosphoribosyltransferase compare
PFLU_RS01620 -4.1 -11.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS25640 -4.1 -12.5 ketol-acid reductoisomerase compare
PFLU_RS01645 -4.0 -14.1 S41 family peptidase compare
PFLU_RS18505 -4.0 -9.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS24125 -4.0 -8.9 cold-shock protein compare
PFLU_RS20565 -4.0 -17.3 3-isopropylmalate dehydrogenase compare
PFLU_RS28390 -4.0 -12.2 methionine biosynthesis protein MetW compare
PFLU_RS24765 -4.0 -21.2 2-isopropylmalate synthase compare
PFLU_RS04470 -3.7 -14.0 histidinol dehydrogenase compare
PFLU_RS01900 -3.7 -8.9 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS23065 -3.7 -9.5 phosphate acyltransferase PlsX compare
PFLU_RS25735 -3.7 -8.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29515 -3.6 -12.7 RidA family protein compare
PFLU_RS12980 -3.6 -8.0 nitrite/sulfite reductase compare
PFLU_RS21495 -3.6 -2.4 TlpA family protein disulfide reductase compare
PFLU_RS22740 -3.5 -5.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS01610 -3.5 -11.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28655 -3.5 -16.6 HAD family hydrolase compare
PFLU_RS20510 -3.4 -16.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS09055 -3.3 -4.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS28165 -3.3 -11.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS22070 -3.2 -3.9 phosphoribosylglycinamide formyltransferase compare
PFLU_RS00175 -3.2 -6.1 tryptophan synthase subunit alpha compare
PFLU_RS28385 -3.2 -13.3 homoserine O-acetyltransferase compare
PFLU_RS23310 -3.1 -12.1 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS03645 -3.0 -15.7 tetratricopeptide repeat protein compare
PFLU_RS25360 -3.0 -7.0 glutamate 5-kinase compare
PFLU_RS00415 -3.0 -3.5 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25755 -2.9 -3.5 pantoate--beta-alanine ligase compare
PFLU_RS28965 -2.9 -11.9 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS02590 -2.9 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS26545 -2.9 -7.2 sel1 repeat family protein compare
PFLU_RS00090 -2.8 -1.1 peptide deformylase compare
PFLU_RS18635 -2.8 -3.7 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS05565 -2.8 -1.9 transporter compare
PFLU_RS22105 -2.7 -6.8 cysteine synthase CysM compare
PFLU_RS22095 -2.6 -17.3 GTP diphosphokinase compare
PFLU_RS01895 -2.6 -3.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS21300 -2.5 -6.4 cysteine hydrolase compare
PFLU_RS07160 -2.5 -13.5 response regulator compare
PFLU_RS24085 -2.5 -3.4 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS03770 -2.4 -10.3 sulfate adenylyltransferase subunit CysN compare
PFLU_RS04070 -2.4 -4.3 peptide chain release factor 3 compare
PFLU_RS01320 -2.4 -9.0 phosphoenolpyruvate carboxykinase compare
PFLU_RS08130 -2.4 -1.6 flippase compare
PFLU_RS25750 -2.4 -5.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS07650 -2.4 -11.5 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS29490 -2.4 -8.4 ribonuclease PH compare
PFLU_RS03765 -2.4 -9.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS07165 -2.3 -13.0 sensor histidine kinase compare
PFLU_RS24860 -2.3 -2.2 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS23305 -2.3 -7.2 arginine N-succinyltransferase compare
PFLU_RS18640 -2.2 -5.9 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS25865 -2.2 -2.0 YhbY family RNA-binding protein compare
PFLU_RS13200 -2.2 -1.7 Ldh family oxidoreductase compare
PFLU_RS18620 -2.2 -6.5 NADH-quinone oxidoreductase subunit B compare
PFLU_RS18670 -2.2 -3.5 NADH-quinone oxidoreductase subunit M compare
PFLU_RS22595 -2.1 -3.3 OmpA family protein compare
PFLU_RS20515 -2.1 -1.5 amidophosphoribosyltransferase compare
PFLU_RS18530 -2.1 -4.6 DNA translocase FtsK compare
PFLU_RS24025 -2.1 -10.4 quinolinate synthase NadA compare
PFLU_RS25025 -2.0 -3.0 hypothetical protein compare
PFLU_RS20690 -2.0 -3.8 hypothetical protein compare
PFLU_RS25730 -2.0 -12.0 PAS domain S-box protein compare
PFLU_RS24820 -2.0 -1.4 nucleoside-diphosphate kinase compare
PFLU_RS08505 -2.0 -6.4 protease HtpX compare
PFLU_RS27620 -2.0 -13.1 acyl-CoA dehydrogenase compare
PFLU_RS24090 -2.0 -4.4 Holliday junction branch migration protein RuvA compare
PFLU_RS24485 -2.0 -9.0 hypothetical protein compare
PFLU_RS04430 -2.0 -8.4 ATP-binding cassette domain-containing protein compare
PFLU_RS14550 -2.0 -8.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS19175 -2.0 -8.0 trigger factor compare
PFLU_RS18675 -1.9 -4.0 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS21060 -1.9 -4.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS29095 -1.9 -15.6 polyphosphate kinase 1 compare
PFLU_RS13540 -1.9 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS19165 -1.9 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS26640 -1.9 -11.0 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS06440 -1.9 -1.2 dCTP deaminase compare
PFLU_RS01965 -1.8 -2.4 ATP-dependent protease subunit HslV compare
PFLU_RS29270 -1.8 -3.3 diaminopimelate epimerase compare
PFLU_RS03970 -1.8 -8.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS29560 -1.8 -1.0 hypothetical protein compare
PFLU_RS02650 -1.8 -1.2 50S ribosomal protein L9 compare
PFLU_RS09980 -1.8 -11.8 peptidase S41 compare
PFLU_RS28650 -1.7 -6.9 RNA pyrophosphohydrolase compare
PFLU_RS26565 -1.7 -1.0 rRNA maturation RNase YbeY compare
PFLU_RS13815 -1.7 -1.3 hypothetical protein compare
PFLU_RS18625 -1.7 -5.3 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS26770 -1.7 -9.4 DedA family protein compare
PFLU_RS06650 -1.7 -2.8 DUF2288 domain-containing protein compare
PFLU_RS24550 -1.7 -1.1 homoserine dehydrogenase compare
PFLU_RS24790 -1.7 -3.1 tetratricopeptide repeat protein compare
PFLU_RS20770 -1.7 -2.3 membrane protein compare
PFLU_RS31650 -1.7 -3.2 hypothetical protein compare
PFLU_RS26595 -1.7 -1.9 lipoprotein compare
PFLU_RS25645 -1.7 -1.6 acetolactate synthase small subunit compare
PFLU_RS04445 -1.7 -6.1 ABC transporter substrate-binding protein compare
PFLU_RS07275 -1.7 -5.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS04440 -1.7 -8.3 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS10835 -1.6 -1.9 enoyl-CoA hydratase/isomerase family protein compare
PFLU_RS30165 -1.6 -8.0 ParA family protein compare
PFLU_RS18655 -1.6 -2.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS23680 -1.6 -11.0 long-chain fatty acid--CoA ligase compare
PFLU_RS15410 -1.6 -2.9 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS25715 -1.6 -7.1 RNA polymerase-binding protein DksA compare
PFLU_RS23720 -1.6 -1.5 6-phosphogluconolactonase compare
PFLU_RS25225 -1.6 -7.9 disulfide bond formation protein B compare
PFLU_RS01485 -1.6 -8.6 cellulase compare
PFLU_RS18665 -1.6 -3.9 NADH-quinone oxidoreductase subunit L compare
PFLU_RS23940 -1.6 -1.2 hypothetical protein compare
PFLU_RS31290 -1.6 -1.7 EamA family transporter compare
PFLU_RS18650 -1.6 -2.2 NADH-quinone oxidoreductase subunit NuoI compare
PFLU_RS16960 -1.5 -1.3 LysR family transcriptional regulator compare
PFLU_RS23200 -1.5 -1.0 flagellar biosynthesis anti-sigma factor FlgM compare
PFLU_RS18630 -1.5 -2.5 NADH-quinone oxidoreductase subunit NuoE compare
PFLU_RS18615 -1.5 -2.2 NADH-quinone oxidoreductase subunit A compare
PFLU_RS19925 -1.5 -2.1 type II secretion system protein compare
PFLU_RS07785 -1.5 -8.9 VacJ family lipoprotein compare
PFLU_RS30800 -1.5 -3.5 ThiF family adenylyltransferase compare
PFLU_RS07150 -1.5 -8.3 tripartite tricarboxylate transporter substrate binding protein compare
PFLU_RS01665 -1.5 -1.3 glutaredoxin 3 compare
PFLU_RS04325 -1.5 -9.3 ribonuclease G compare
PFLU_RS07255 -1.4 -3.5 sulfurtransferase TusA family protein compare
PFLU_RS05860 -1.4 -1.6 tail protein compare
PFLU_RS05780 -1.4 -7.6 helix-turn-helix transcriptional regulator compare
PFLU_RS18645 -1.4 -3.4 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS31100 -1.4 -3.8 preprotein translocase subunit SecG compare
PFLU_RS29275 -1.4 -3.7 DUF484 family protein compare
PFLU_RS15950 -1.4 -2.7 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
PFLU_RS25920 -1.4 -2.2 outer membrane protein assembly factor BamE compare
PFLU_RS07655 -1.4 -4.2 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS29735 -1.4 -6.3 HlyC/CorC family transporter compare
PFLU_RS24205 -1.4 -2.2 DNA binding protein compare
PFLU_RS02365 -1.4 -7.4 glycosyltransferase compare
PFLU_RS02460 -1.4 -6.3 alpha/beta fold hydrolase compare
PFLU_RS13710 -1.4 -2.3 DUF1294 domain-containing protein compare
PFLU_RS27380 -1.4 -7.4 anthranilate synthase component I compare
PFLU_RS07665 -1.3 -2.1 type I DNA topoisomerase compare
PFLU_RS06320 -1.3 -4.2 OmpH family outer membrane protein compare
PFLU_RS25875 -1.3 -2.5 transcription elongation factor GreA compare
PFLU_RS31185 -1.3 -2.7 hypothetical protein compare
PFLU_RS05500 -1.3 -2.3 HigA family addiction module antidote protein compare
PFLU_RS15850 -1.3 -1.4 hypothetical protein compare
PFLU_RS06055 -1.3 -2.3 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS03540 -1.3 -2.2 type III secretion protein compare
PFLU_RS29265 -1.3 -1.2 diaminopimelate decarboxylase compare
PFLU_RS25585 -1.3 -1.9 exodeoxyribonuclease V subunit alpha compare
PFLU_RS03015 -1.3 -1.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH compare
PFLU_RS24805 -1.3 -4.7 helix-turn-helix domain-containing protein compare
PFLU_RS30105 -1.3 -3.7 DeoR family transcriptional regulator compare
PFLU_RS30160 -1.3 -2.6 ParB/RepB/Spo0J family partition protein compare
PFLU_RS25740 -1.3 -4.0 polynucleotide adenylyltransferase PcnB compare
PFLU_RS00510 -1.3 -8.7 CitMHS family transporter compare
PFLU_RS26905 -1.3 -5.7 transcriptional regulator NrdR compare
PFLU_RS02050 -1.3 -8.0 NAD(P)-binding protein compare
PFLU_RS04435 -1.3 -5.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS06165 -1.3 -1.5 hypothetical protein compare
PFLU_RS02970 -1.3 -3.5 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS20845 -1.3 -1.4 hypothetical protein compare
PFLU_RS21290 -1.3 -1.0 hypothetical protein compare
PFLU_RS24565 -1.2 -1.1 50S ribosomal protein L19 compare
PFLU_RS07695 -1.2 -2.4 beta-N-acetylhexosaminidase compare
PFLU_RS02975 -1.2 -4.5 precorrin-3B synthase compare
PFLU_RS07225 -1.2 -8.2 L-aspartate oxidase compare
PFLU_RS04715 -1.2 -5.2 D-alanine--D-alanine ligase compare
PFLU_RS04475 -1.2 -7.1 histidinol-phosphate transaminase compare
PFLU_RS13035 -1.2 -1.4 cobalamin biosynthesis protein CobW compare
PFLU_RS05885 -1.2 -3.6 recombinase RecA compare
PFLU_RS23730 -1.2 -8.0 MurR/RpiR family transcriptional regulator compare
PFLU_RS24095 -1.2 -1.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS19070 -1.2 -1.7 LysR family transcriptional regulator compare
PFLU_RS25800 -1.2 -3.7 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS02180 -1.2 -1.2 thioredoxin TrxC compare
PFLU_RS30470 -1.1 -2.0 addiction module antidote protein compare
PFLU_RS29090 -1.1 -5.0 exopolyphosphatase compare
PFLU_RS19160 -1.1 -6.5 endopeptidase La compare
PFLU_RS04385 -1.1 -3.6 RNase adapter RapZ compare
PFLU_RS04650 -1.1 -8.3 ABC transporter substrate-binding protein compare
PFLU_RS05610 -1.1 -3.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS25935 -1.1 -1.3 SsrA-binding protein SmpB compare
PFLU_RS07540 -1.1 -3.3 class II glutamine amidotransferase compare
PFLU_RS04510 -1.1 -0.7 malate dehydrogenase (quinone) compare
PFLU_RS20660 -1.1 -5.4 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS26020 -1.1 -6.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS19170 -1.1 -3.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS21985 -1.1 -3.1 adenosylcobinamide-GDP ribazoletransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25 in carbon source experiments

For carbon source Trisodium citrate dihydrate across organisms