Experiment set1IT031 for Pseudomonas simiae WCS417

Compare to:

Potassium acetate carbon source

200 most important genes:

  gene name fitness t score description  
PS417_18595 -3.1 -8.2 3-isopropylmalate dehydratase compare
PS417_08220 -3.0 -1.4 epimerase compare
PS417_17420 -2.9 -12.5 ethanol oxidation regulatory protein ercA (from data) compare
PS417_17415 -2.8 -4.9 histidine kinase compare
PS417_17485 -2.8 -8.3 membrane protein compare
PS417_24745 -2.7 -7.1 gamma-glutamyl phosphate reductase compare
PS417_23995 -2.7 -1.5 preprotein translocase subunit SecG compare
PS417_04415 -2.7 -9.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25720 -2.6 -8.2 anthranilate synthase component II compare
PS417_08230 -2.6 -3.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_20985 -2.6 -3.8 porin compare
PS417_01565 -2.6 -6.1 imidazole glycerol phosphate synthase compare
PS417_01855 -2.6 -2.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_17495 -2.6 -9.2 multidrug ABC transporter permease compare
PS417_25725 -2.5 -14.9 anthranilate synthase component I compare
PS417_17455 -2.5 -4.6 cytochrome C compare
PS417_23810 -2.5 -11.4 acetolactate synthase 3 catalytic subunit compare
PS417_25715 -2.5 -5.9 anthranilate phosphoribosyltransferase compare
PS417_23110 -2.5 -11.0 2-isopropylmalate synthase compare
PS417_18585 -2.5 -8.2 3-isopropylmalate dehydrogenase compare
PS417_24155 -2.5 -4.2 ATP-binding protein compare
PS417_00185 -2.4 -5.1 tryptophan synthase subunit beta compare
PS417_18560 -2.4 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_16465 -2.4 -13.1 sirohydrochlorin ferrochelatase compare
PS417_24835 -2.3 -5.9 hypothetical protein compare
PS417_08125 -2.3 -2.0 prephenate dehydratase compare
PS417_08245 -2.3 -1.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_16570 -2.3 -9.1 isocitrate lyase compare
PS417_23800 -2.2 -9.7 ketol-acid reductoisomerase compare
PS417_04420 -2.2 -10.6 histidinol dehydrogenase compare
PS417_27795 -2.2 -1.9 orotate phosphoribosyltransferase compare
PS417_26740 -2.2 -7.7 homoserine acetyltransferase compare
PS417_18600 -2.2 -4.2 isopropylmalate isomerase compare
PS417_01575 -2.2 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23545 -2.2 -4.2 gamma-glutamyl kinase compare
PS417_27040 -2.1 -4.5 3-phosphoglycerate dehydrogenase compare
PS417_17450 -2.1 -4.6 amino acid ABC transporter substrate-binding protein compare
PS417_26745 -2.1 -7.1 methionine biosynthesis protein MetW compare
PS417_02005 -2.1 -9.9 glutamate synthase compare
PS417_08205 -2.0 -4.8 acetyltransferase compare
PS417_21750 -2.0 -13.3 acetyl-CoA synthetase compare
PS417_26040 -2.0 -5.3 malate synthase compare
PS417_25920 -2.0 -10.3 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_25940 -2.0 -7.4 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_17435 -2.0 -10.9 dehydrogenase compare
PS417_23805 -1.9 -6.9 acetolactate synthase 3 regulatory subunit compare
PS417_06375 -1.9 -1.4 deoxycytidine triphosphate deaminase compare
PS417_17505 -1.9 -4.9 LuxR family transcriptional regulator compare
PS417_25930 -1.9 -6.4 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_26890 -1.9 -7.4 dihydroxy-acid dehydratase compare
PS417_24935 -1.9 -1.1 hypothetical protein compare
PS417_12290 -1.9 -8.1 sulfite reductase compare
PS417_02510 -1.9 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_05595 -1.9 -10.4 ornithine carbamoyltransferase compare
PS417_08225 -1.9 -6.9 acetolactate synthase compare
PS417_18530 -1.9 -6.6 O-succinylhomoserine sulfhydrylase compare
PS417_12855 -1.8 -5.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26730 -1.8 -2.2 pyrroline-5-carboxylate reductase compare
PS417_17480 -1.8 -5.9 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_20610 -1.8 -2.2 hypothetical protein compare
PS417_17425 -1.8 -3.9 hypothetical protein compare
PS417_08200 -1.7 -3.8 hypothetical protein compare
PS417_22445 -1.7 -4.2 ATP-dependent DNA helicase RuvB compare
PS417_23770 -1.6 -3.0 exodeoxyribonuclease V subunit alpha compare
PS417_24765 -1.6 -4.3 membrane protein compare
PS417_17490 -1.6 -2.0 ABC transporter ATP-binding protein compare
PS417_08195 -1.6 -8.9 hypothetical protein compare
PS417_02000 -1.6 -9.1 glutamate synthase compare
PS417_20665 -1.6 -5.0 hypothetical protein compare
PS417_02225 -1.6 -3.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23775 -1.5 -3.1 exodeoxyribonuclease V subunit beta compare
PS417_22375 -1.5 -1.4 cold-shock protein compare
PS417_27195 -1.5 -1.8 N-acetylglutamate synthase compare
PS417_01850 -1.5 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00180 -1.5 -2.8 tryptophan synthase subunit alpha compare
PS417_05840 -1.5 -3.9 LuxR family transcriptional regulator compare
PS417_25710 -1.4 -1.8 indole-3-glycerol-phosphate synthase compare
PS417_20160 -1.4 -4.0 cysteine synthase compare
PS417_22520 -1.3 -2.0 histidine kinase compare
PS417_07640 -1.3 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_05165 -1.3 -3.9 cytosol aminopeptidase compare
PS417_16400 -1.2 -2.7 NAD(P)H-quinone oxidoreductase compare
PS417_26990 -1.2 -1.7 RNA pyrophosphohydrolase compare
PS417_27875 -1.2 -6.1 histidine kinase compare
PS417_21255 -1.2 -2.1 hypothetical protein compare
PS417_01095 -1.2 -1.8 amino acid ABC transporter ATP-binding protein compare
PS417_02415 -1.2 -2.4 phosphoserine phosphatase compare
PS417_01560 -1.2 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_24615 -1.1 -1.0 hypothetical protein compare
PS417_21035 -1.1 -5.6 multidrug transporter compare
PS417_01710 -1.1 -5.7 histidine utilization repressor compare
PS417_27435 -1.1 -5.4 polyphosphate kinase compare
PS417_15885 -1.1 -2.3 GCN5 family acetyltransferase compare
PS417_12310 -1.1 -7.3 methionine synthase compare
PS417_15285 -1.1 -1.4 type VI secretion protein compare
PS417_01570 -1.1 -1.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08730 -1.1 -1.9 cytochrome C compare
PS417_15135 -1.1 -1.9 hypothetical protein compare
PS417_19965 -1.0 -6.6 histidine kinase compare
PS417_01580 -1.0 -1.7 imidazole glycerol phosphate synthase compare
PS417_04860 -1.0 -4.4 ATPase compare
PS417_26605 -1.0 -1.2 malonate decarboxylase subunit beta compare
PS417_08155 -1.0 -2.3 integration host factor subunit beta compare
PS417_04410 -1.0 -1.8 hypothetical protein compare
PS417_14905 -1.0 -2.1 C4-dicarboxylate ABC transporter compare
PS417_01195 -1.0 -2.0 RNA-binding protein S4 compare
PS417_13800 -0.9 -1.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_27305 -0.9 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
PS417_26995 -0.9 -4.5 phosphoserine phosphatase compare
PS417_27035 -0.9 -2.8 FAD-linked oxidase compare
PS417_23900 -0.9 -5.1 poly(A) polymerase compare
PS417_16990 -0.9 -4.7 acyl-CoA dehydrogenase compare
PS417_17470 -0.9 -2.9 LuxR family transcriptional regulator compare
PS417_18425 -0.9 -1.4 sporulation protein compare
PS417_10810 -0.9 -2.2 hypothetical protein compare
PS417_01605 -0.9 -1.5 phosphoglycerate mutase compare
PS417_21705 -0.9 -3.2 arginine N-succinyltransferase compare
PS417_20620 -0.9 -3.6 glycosyl transferase family 2 compare
PS417_27705 -0.9 -1.5 amino acid dehydrogenase compare
PS417_00650 -0.9 -1.0 LysR family transcriptional regulator compare
PS417_17460 -0.8 -4.7 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) compare
PS417_16490 -0.8 -1.2 cell division protein FtsK compare
PS417_26510 -0.8 -4.6 5,10-methylenetetrahydrofolate reductase compare
PS417_07190 -0.8 -4.3 MFS transporter compare
PS417_10220 -0.8 -3.4 hypothetical protein compare
PS417_04835 -0.8 -2.1 hemolysin D compare
PS417_26985 -0.8 -2.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_20125 -0.8 -2.7 phosphoribosylglycinamide formyltransferase compare
PS417_01950 -0.8 -2.8 malate dehydrogenase compare
PS417_10425 -0.8 -1.7 hypothetical protein compare
PS417_21210 -0.8 -2.2 amidotransferase compare
PS417_04340 -0.8 -4.8 ribosome hibernation promoting factor HPF compare
PS417_24115 -0.8 -1.8 hypothetical protein compare
PS417_13010 -0.8 -1.3 alpha/beta hydrolase compare
PS417_27590 -0.8 -3.2 hypothetical protein compare
PS417_20645 -0.8 -5.3 membrane protein compare
PS417_12840 -0.8 -3.0 TetR family transcriptional regulator compare
PS417_04595 -0.8 -2.2 cell division protein MraZ compare
PS417_19605 -0.8 -1.0 hypothetical protein compare
PS417_21695 -0.8 -1.7 succinylglutamate-semialdehyde dehydrogenase compare
PS417_18055 -0.7 -1.2 general secretion pathway protein GspK compare
PS417_17475 -0.7 -5.2 histidine kinase compare
PS417_09035 -0.7 -1.9 hypothetical protein compare
PS417_27535 -0.7 -3.7 chemotaxis protein CheY compare
PS417_06530 -0.7 -2.2 membrane protein compare
PS417_12650 -0.7 -2.3 magnesium transporter compare
PS417_02255 -0.7 -1.2 lipopolysaccharide kinase compare
PS417_13870 -0.7 -1.3 hypothetical protein compare
PS417_12160 -0.7 -2.1 Fis family transcriptional regulator compare
PS417_23490 -0.7 -1.0 dihydrofolate reductase compare
PS417_14260 -0.7 -2.0 phosphate ABC transporter permease compare
PS417_17855 -0.7 -1.5 major facilitator transporter compare
PS417_25120 -0.6 -2.3 capsular biosynthesis protein compare
PS417_07875 -0.6 -0.8 hypothetical protein compare
PS417_20205 -0.6 -1.9 LysR family transcriptional regulator compare
PS417_13050 -0.6 -0.9 N-acetylglucosamine-6-sulfatase compare
PS417_08990 -0.6 -1.8 ABC transporter substrate-binding protein compare
PS417_00755 -0.6 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_08515 -0.6 -2.7 hypothetical protein compare
PS417_14075 -0.6 -0.9 hypothetical protein compare
PS417_08685 -0.6 -1.2 flagellar hook-length control protein FliK compare
PS417_00485 -0.6 -1.6 ABC transporter permease compare
PS417_27870 -0.6 -1.6 ATP-dependent DNA helicase RecG compare
PS417_26515 -0.6 -2.5 hypothetical protein compare
PS417_13305 -0.6 -1.0 hypothetical protein compare
PS417_19505 -0.6 -1.6 2,4-diaminobutyrate 4-aminotransferase compare
PS417_16520 -0.6 -1.2 cold-shock protein compare
PS417_03385 -0.6 -0.8 flavin reductase compare
PS417_15510 -0.6 -1.4 hypothetical protein compare
PS417_07985 -0.6 -0.9 AbrB family transcriptional regulator compare
PS417_06710 -0.6 -1.4 beta-ketoadipyl CoA thiolase compare
PS417_18860 -0.6 -2.3 transcriptional regulator compare
PS417_23170 -0.6 -1.3 FeS assembly protein IscX compare
PS417_15095 -0.6 -1.8 hypothetical protein compare
PS417_03740 -0.6 -1.6 peptidylprolyl isomerase compare
PS417_21875 -0.6 -1.1 AraC family transcriptional regulator compare
PS417_26060 -0.6 -1.8 DNA polymerase III subunit epsilon compare
PS417_19335 -0.6 -1.4 isochorismatase compare
PS417_16195 -0.6 -0.9 AraC family transcriptional regulator compare
PS417_27010 -0.6 -3.5 threonine dehydratase compare
PS417_09725 -0.6 -3.3 transporter compare
PS417_08580 -0.6 -3.0 histidine kinase compare
PS417_25290 -0.6 -1.1 hypothetical protein compare
PS417_21125 -0.6 -2.7 phosphoadenosine phosphosulfate reductase compare
PS417_07995 -0.6 -2.3 LOG family protein compare
PS417_12505 -0.6 -2.4 peptidase compare
PS417_24295 -0.6 -3.0 carbon starvation protein A compare
PS417_04685 -0.6 -2.2 histidine kinase compare
PS417_28510 -0.6 -2.3 chromosome partitioning protein compare
PS417_11820 -0.6 -1.4 histidine kinase compare
PS417_28355 -0.6 -2.8 cardiolipin synthetase compare
PS417_14305 -0.6 -2.0 hydroxyproline-2-epimerase compare
PS417_08045 -0.6 -1.1 uracil permease compare
PS417_15710 -0.6 -0.8 nitrate reductase compare
PS417_16860 -0.6 -1.5 diadenosine tetraphosphate hydrolase compare
PS417_17500 -0.6 -1.4 sulfurtransferase compare
PS417_25905 -0.6 -1.6 AsnC family transcriptional regulator compare
PS417_09220 -0.6 -1.3 cupin compare
PS417_07890 -0.6 -1.7 hypothetical protein compare
PS417_01180 -0.6 -3.4 ribosomal protein S6 modification protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Potassium acetate in Pseudomonas simiae WCS417

For carbon source Potassium acetate across organisms