Experiment set1IT031 for Variovorax sp. OAS795

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS16595 -8.5 -5.9 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS16600 -6.0 -8.3 CysB family HTH-type transcriptional regulator compare
ABID97_RS23225 -6.0 -18.4 glutamate synthase-related protein compare
ABID97_RS15380 -6.0 -12.5 nitrite/sulfite reductase compare
ABID97_RS16690 -5.9 -7.0 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS07775 -5.4 -4.1 phosphoribosylglycinamide formyltransferase compare
ABID97_RS06575 -5.4 -6.5 trehalose-phosphatase compare
ABID97_RS20615 -5.3 -8.1 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS17970 -5.1 -8.7 protein TolQ compare
ABID97_RS08425 -5.0 -3.5 tryptophan synthase subunit alpha compare
ABID97_RS01565 -5.0 -9.0 DNA starvation/stationary phase protection protein compare
ABID97_RS05260 -4.9 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS15375 -4.8 -6.4 DUF934 domain-containing protein compare
ABID97_RS14160 -4.8 -6.6 cell division protein ZapE compare
ABID97_RS09180 -4.8 -3.3 DNA polymerase I compare
ABID97_RS05250 -4.7 -6.4 anthranilate synthase component I compare
ABID97_RS10885 -4.6 -7.1 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS25015 -4.3 -3.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS07405 -4.2 -14.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS15370 -4.1 -13.4 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS04960 -4.1 -1.6 ATP-binding protein compare
ABID97_RS26600 -3.9 -5.3 ATP-binding protein compare
ABID97_RS02600 -3.8 -3.7 homoserine O-acetyltransferase compare
ABID97_RS15360 -3.8 -5.1 GTP-binding protein compare
ABID97_RS13990 -3.8 -4.5 amino acid aminotransferase compare
ABID97_RS14095 -3.7 -13.1 PAS domain S-box protein compare
ABID97_RS23230 -3.7 -13.2 transposase compare
ABID97_RS06345 -3.7 -4.3 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS23220 -3.7 -1.9 glutamate synthase subunit beta compare
ABID97_RS03680 -3.6 -9.6 lysophospholipid transporter LplT compare
ABID97_RS16695 -3.6 -18.6 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS07430 -3.5 -14.0 pantoate--beta-alanine ligase compare
ABID97_RS12140 -3.5 -8.4 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS15365 -3.4 -7.3 sulfate adenylyltransferase subunit CysD compare
ABID97_RS14090 -3.3 -1.9 response regulator transcription factor compare
ABID97_RS03805 -3.2 -1.8 ATP-binding protein compare
ABID97_RS07500 -3.2 -3.0 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS21150 -3.1 -12.8 FAD-dependent oxidoreductase compare
ABID97_RS07435 -3.1 -10.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS12180 -3.1 -2.9 hypothetical protein compare
ABID97_RS16535 -3.0 -9.3 arginine/lysine/ornithine decarboxylase compare
ABID97_RS05280 -2.9 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS08435 -2.9 -2.0 phosphoribosylanthranilate isomerase compare
ABID97_RS03910 -2.9 -2.0 orotate phosphoribosyltransferase compare
ABID97_RS26605 -2.9 -3.2 sigma-54 dependent transcriptional regulator compare
ABID97_RS15465 -2.8 -13.6 sulfate ABC transporter substrate-binding protein compare
ABID97_RS05765 -2.8 -1.9 UDP-glucose 4-epimerase GalE compare
ABID97_RS06365 -2.8 -2.4 TlpA disulfide reductase family protein compare
ABID97_RS16290 -2.8 -8.0 protein-glutamate O-methyltransferase CheR compare
ABID97_RS05750 -2.8 -2.7 glycosyltransferase compare
ABID97_RS05755 -2.8 -2.7 glycosyltransferase compare
ABID97_RS23455 -2.8 -4.5 hypothetical protein compare
ABID97_RS07000 -2.8 -11.9 threonine ammonia-lyase, biosynthetic compare
ABID97_RS04890 -2.8 -6.6 cation:proton antiporter compare
ABID97_RS13860 -2.7 -6.4 hypothetical protein compare
ABID97_RS04885 -2.7 -14.5 YbdK family carboxylate-amine ligase compare
ABID97_RS15665 -2.7 -8.6 [protein-PII] uridylyltransferase compare
ABID97_RS06565 -2.7 -15.9 alpha,alpha-trehalose-phosphate synthase (UDP-forming) compare
ABID97_RS06460 -2.7 -1.8 sigma 54-interacting transcriptional regulator compare
ABID97_RS04500 -2.7 -1.8 HPr(Ser) kinase/phosphatase compare
ABID97_RS17635 -2.6 -5.8 presqualene diphosphate synthase HpnD compare
ABID97_RS23425 -2.6 -2.9 tRNA-Pro compare
ABID97_RS17850 -2.6 -1.3 tetratricopeptide repeat protein compare
ABID97_RS23915 -2.6 -4.8 heme o synthase compare
ABID97_RS05365 -2.5 -4.8 DUF4390 domain-containing protein compare
ABID97_RS03800 -2.5 -2.9 O-antigen ligase family protein compare
ABID97_RS05370 -2.5 -6.1 ATP-binding protein compare
ABID97_RS17590 -2.5 -13.0 endopeptidase La compare
ABID97_RS00255 -2.5 -12.9 type IV pilus twitching motility protein PilT compare
ABID97_RS05275 -2.4 -2.3 anthranilate phosphoribosyltransferase compare
ABID97_RS02110 -2.4 -16.9 type IV pilus modification protein PilV compare
ABID97_RS23450 -2.4 -6.2 MBOAT family protein compare
ABID97_RS14665 -2.3 -4.2 UvrD-helicase domain-containing protein compare
ABID97_RS14975 -2.3 -6.4 hypothetical protein compare
ABID97_RS06275 -2.3 -2.1 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS06755 -2.3 -11.7 putative Na+/H+ antiporter compare
ABID97_RS06520 -2.3 -1.5 SAM-dependent methyltransferase compare
ABID97_RS24170 -2.2 -7.2 ATP-binding protein compare
ABID97_RS25340 -2.2 -8.9 apolipoprotein N-acyltransferase compare
ABID97_RS26535 -2.2 -1.6 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS14625 -2.2 -4.1 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS08480 -2.2 -1.5 citrate synthase compare
ABID97_RS23430 -2.2 -12.7 type IV-A pilus assembly ATPase PilB compare
ABID97_RS02125 -2.2 -18.0 PilC/PilY family type IV pilus protein compare
ABID97_RS28990 -2.2 -5.2 aspartate 1-decarboxylase compare
ABID97_RS06450 -2.2 -2.5 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS02120 -2.2 -12.4 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS26530 -2.1 -6.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS08710 -2.1 -7.0 polynucleotide adenylyltransferase PcnB compare
ABID97_RS08445 -2.1 -7.8 FimV/HubP family polar landmark protein compare
ABID97_RS02510 -2.0 -17.5 NADP-dependent malic enzyme compare
ABID97_RS02145 -2.0 -7.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS23435 -2.0 -12.1 type II secretion system F family protein compare
ABID97_RS10705 -2.0 -4.8 H-NS histone family protein compare
ABID97_RS06415 -2.0 -12.8 sigma-54 dependent transcriptional regulator compare
ABID97_RS23940 -2.0 -7.1 cytochrome c oxidase subunit 3 compare
ABID97_RS25525 -2.0 -3.1 LacI family DNA-binding transcriptional regulator compare
ABID97_RS24705 -2.0 -6.2 response regulator compare
ABID97_RS23440 -2.0 -11.0 A24 family peptidase compare
ABID97_RS02115 -2.0 -12.9 PilW family protein compare
ABID97_RS03915 -2.0 -7.6 DUF4124 domain-containing protein compare
ABID97_RS19495 -1.9 -5.8 glucan biosynthesis protein D compare
ABID97_RS17640 -1.9 -2.6 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS09935 -1.9 -7.0 hypothetical protein compare
ABID97_RS02130 -1.9 -10.5 type IV pilin protein compare
ABID97_RS04505 -1.8 -1.9 ferric iron uptake transcriptional regulator compare
ABID97_RS24920 -1.8 -2.1 Holliday junction branch migration protein RuvA compare
ABID97_RS22705 -1.8 -8.7 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS13450 -1.8 -3.2 TetR/AcrR family transcriptional regulator compare
ABID97_RS02135 -1.8 -8.0 GspH/FimT family pseudopilin compare
ABID97_RS07410 -1.8 -6.3 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS02850 -1.8 -7.1 response regulator transcription factor compare
ABID97_RS23650 -1.8 -13.6 serine/threonine-protein kinase compare
ABID97_RS01840 -1.8 -11.3 DUF1631 family protein compare
ABID97_RS08695 -1.7 -11.3 permease compare
ABID97_RS06175 -1.7 -13.1 STAS domain-containing protein compare
ABID97_RS26540 -1.7 -5.6 dihydrolipoyl dehydrogenase compare
ABID97_RS02140 -1.7 -9.9 sugar transferase compare
ABID97_RS17050 -1.7 -2.2 RlmE family RNA methyltransferase compare
ABID97_RS23275 -1.7 -10.3 type 4a pilus biogenesis protein PilO compare
ABID97_RS01825 -1.7 -11.7 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS08220 -1.7 -10.3 phosphoenolpyruvate carboxylase compare
ABID97_RS02855 -1.6 -7.4 sensor histidine kinase N-terminal domain-containing protein compare
ABID97_RS26550 -1.6 -2.2 NADP-dependent malic enzyme compare
ABID97_RS19375 -1.6 -5.4 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS21165 -1.6 -4.1 energy-dependent translational throttle protein EttA compare
ABID97_RS25085 -1.6 -3.0 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS03110 -1.6 -5.7 helix-turn-helix transcriptional regulator compare
ABID97_RS08855 -1.6 -4.5 thiolase family protein compare
ABID97_RS08330 -1.6 -9.7 RNA polymerase sigma factor RpoE compare
ABID97_RS08430 -1.6 -2.0 tryptophan synthase subunit beta compare
ABID97_RS10880 -1.6 -3.8 Mth938-like domain-containing protein compare
ABID97_RS13750 -1.6 -1.3 hypothetical protein compare
ABID97_RS10690 -1.6 -7.4 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS08860 -1.5 -3.7 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS10695 -1.5 -6.5 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS12575 -1.5 -1.8 ATP-grasp domain-containing protein compare
ABID97_RS20610 -1.5 -4.3 DNA-binding protein YbiB compare
ABID97_RS04480 -1.5 -2.4 magnesium/cobalt transporter CorA compare
ABID97_RS09595 -1.5 -1.8 Arc family DNA-binding protein compare
ABID97_RS21945 -1.5 -4.7 hemolysin family protein compare
ABID97_RS14260 -1.5 -7.1 FtsH protease activity modulator HflK compare
ABID97_RS23280 -1.5 -5.2 PilN domain-containing protein compare
ABID97_RS15995 -1.5 -6.2 PilZ domain-containing protein compare
ABID97_RS01650 -1.4 -1.4 orotidine-5'-phosphate decarboxylase compare
ABID97_RS19065 -1.4 -5.9 GntR family transcriptional regulator compare
ABID97_RS24370 -1.4 -3.1 DUF1841 family protein compare
ABID97_RS07415 -1.4 -9.8 quinolinate synthase NadA compare
ABID97_RS23270 -1.4 -9.8 pilus assembly protein PilP compare
ABID97_RS23950 -1.4 -7.1 cytochrome c oxidase assembly protein compare
ABID97_RS10295 -1.4 -1.4 winged helix-turn-helix transcriptional regulator compare
ABID97_RS02460 -1.4 -11.0 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS13865 -1.4 -3.9 hypothetical protein compare
ABID97_RS23380 -1.4 -9.2 lytic transglycosylase domain-containing protein compare
ABID97_RS09940 -1.4 -5.4 nitrogen regulation protein NR(II) compare
ABID97_RS13245 -1.4 -1.3 XRE family transcriptional regulator compare
ABID97_RS24690 -1.4 -7.4 methyl-accepting chemotaxis protein compare
ABID97_RS21365 -1.4 -7.0 protein-L-isoaspartate O-methyltransferase compare
ABID97_RS07440 -1.4 -7.5 L-aspartate oxidase compare
ABID97_RS06315 -1.4 -10.1 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS25345 -1.3 -5.0 transporter associated domain-containing protein compare
ABID97_RS02455 -1.3 -3.1 nucleotidyltransferase family protein compare
ABID97_RS06900 -1.3 -6.5 cyanophycin synthetase compare
ABID97_RS17265 -1.3 -3.6 two-component system response regulator OmpR compare
ABID97_RS06430 -1.3 -7.5 cytochrome c biogenesis protein CcsA compare
ABID97_RS27450 -1.3 -1.1 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS08195 -1.3 -4.9 histidine kinase compare
ABID97_RS02790 -1.3 -9.0 penicillin-binding protein 1A compare
ABID97_RS02605 -1.3 -8.1 TMEM165/GDT1 family protein compare
ABID97_RS17895 -1.3 -6.8 transcriptional regulator NrdR compare
ABID97_RS02210 -1.3 -6.6 pilin compare
ABID97_RS15585 -1.3 -5.3 sulfate ABC transporter ATP-binding protein compare
ABID97_RS27980 -1.3 -2.0 alcohol dehydrogenase catalytic domain-containing protein compare
ABID97_RS17200 -1.3 -9.9 ribonuclease R compare
ABID97_RS28635 -1.2 -5.5 IclR family transcriptional regulator compare
ABID97_RS17425 -1.2 -8.5 TonB-dependent receptor compare
ABID97_RS04740 -1.2 -1.6 DUF2214 family protein compare
ABID97_RS04610 -1.2 -5.7 potassium transporter Kup compare
ABID97_RS02200 -1.2 -10.0 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS08350 -1.2 -8.2 translation elongation factor 4 compare
ABID97_RS23265 -1.2 -6.1 type IV pilus secretin PilQ compare
ABID97_RS23325 -1.2 -5.8 cytochrome c biogenesis protein ResB compare
ABID97_RS14200 -1.2 -5.1 pseudouridine synthase compare
ABID97_RS06600 -1.2 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS17135 -1.2 -8.6 RIP metalloprotease RseP compare
ABID97_RS08200 -1.2 -8.0 LytTR family DNA-binding domain-containing protein compare
ABID97_RS15580 -1.2 -4.0 sulfate ABC transporter permease subunit CysW compare
ABID97_RS23655 -1.2 -5.3 YicC/YloC family endoribonuclease compare
ABID97_RS16315 -1.2 -3.4 hypothetical protein compare
ABID97_RS23285 -1.2 -7.0 pilus assembly protein PilM compare
ABID97_RS17595 -1.2 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS08250 -1.2 -6.6 RluA family pseudouridine synthase compare
ABID97_RS04825 -1.2 -5.6 hypothetical protein compare
ABID97_RS08360 -1.2 -4.3 DUF4845 domain-containing protein compare
ABID97_RS14850 -1.2 -2.6 P-II family nitrogen regulator compare
ABID97_RS16685 -1.1 -3.1 tol-pal system protein YbgF compare
ABID97_RS25125 -1.1 -5.4 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS23360 -1.1 -1.0 hypothetical protein compare
ABID97_RS09270 -1.1 -1.7 exodeoxyribonuclease VII small subunit compare
ABID97_RS08775 -1.1 -1.7 ribosome small subunit-dependent GTPase A compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Variovorax sp. OAS795

For carbon source L-Malic acid disodium salt monohydrate across organisms