Experiment set1IT031 for Rhizobium sp. OAE497

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS19355 -7.1 -4.6 thioredoxin compare
ABIE40_RS02340 -7.1 -4.9 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS18380 -6.8 -8.1 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS19050 -6.7 -8.0 3-isopropylmalate dehydrogenase compare
ABIE40_RS11950 -6.6 -4.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS17525 -6.3 -3.1 lipoprotein compare
ABIE40_RS18590 -6.1 -15.8 homoserine O-succinyltransferase compare
ABIE40_RS13330 -5.9 -12.0 2-isopropylmalate synthase compare
ABIE40_RS09095 -5.9 -4.0 PAS domain-containing sensor histidine kinase compare
ABIE40_RS06555 -5.8 -2.9 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS09545 -5.6 -3.2 anthranilate phosphoribosyltransferase compare
ABIE40_RS17530 -5.6 -3.8 diaminopimelate decarboxylase compare
ABIE40_RS00245 -5.6 -12.8 prephenate dehydratase compare
ABIE40_RS16320 -5.5 -3.8 histidinol-phosphatase compare
ABIE40_RS03665 -5.4 -3.7 ATP phosphoribosyltransferase compare
ABIE40_RS16645 -5.4 -20.5 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS19415 -5.3 -15.6 phosphoenolpyruvate carboxykinase compare
ABIE40_RS02325 -5.3 -3.7 ornithine carbamoyltransferase compare
ABIE40_RS11150 -5.3 -5.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS09660 -5.3 -14.8 AI-2E family transporter compare
ABIE40_RS03660 -5.3 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS10725 -5.3 -3.6 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS20460 -5.2 -3.4 precorrin-3B synthase compare
ABIE40_RS19460 -5.1 -3.5 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS19040 -5.1 -9.1 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS09155 -5.1 -5.5 DUF934 domain-containing protein compare
ABIE40_RS10720 -5.0 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS11105 -4.9 -3.4 cobyrinate a,c-diamide synthase compare
ABIE40_RS19440 -4.9 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS19330 -4.9 -3.4 phosphoribosylanthranilate isomerase compare
ABIE40_RS09725 -4.9 -3.4 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS11175 -4.9 -3.4 cobyric acid synthase compare
ABIE40_RS06930 -4.9 -3.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS06270 -4.9 -4.7 amidophosphoribosyltransferase compare
ABIE40_RS13410 -4.8 -3.3 anthranilate synthase compare
ABIE40_RS02725 -4.8 -7.9 histidinol dehydrogenase compare
ABIE40_RS11165 -4.7 -2.7 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS01970 -4.7 -3.9 acetylglutamate kinase compare
ABIE40_RS09360 -4.7 -3.2 excinuclease ABC subunit UvrA compare
ABIE40_RS18925 -4.6 -6.3 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS06560 -4.6 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS04215 -4.6 -3.7 sensor domain-containing phosphodiesterase compare
ABIE40_RS01930 -4.6 -2.3 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS20440 -4.6 -3.0 cobalt-precorrin-6A reductase compare
ABIE40_RS11495 -4.6 -3.2 acetolactate synthase 3 large subunit compare
ABIE40_RS05660 -4.6 -3.2 response regulator transcription factor compare
ABIE40_RS12845 -4.6 -4.1 glycosyltransferase family 4 protein compare
ABIE40_RS10180 -4.6 -4.4 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS19450 -4.5 -3.1 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS17595 -4.5 -3.1 histidinol-phosphate transaminase compare
ABIE40_RS12925 -4.5 -13.6 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS20435 -4.5 -3.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS13970 -4.4 -12.0 aldehyde dehydrogenase family protein compare
ABIE40_RS19130 -4.3 -3.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS02320 -4.3 -4.2 aspartate aminotransferase family protein compare
ABIE40_RS20455 -4.2 -2.1 precorrin-8X methylmutase compare
ABIE40_RS17565 -4.2 -3.2 ABC transporter permease compare
ABIE40_RS18920 -4.2 -4.5 glutamate 5-kinase compare
ABIE40_RS15345 -4.2 -10.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS20430 -4.1 -2.9 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS08500 -4.1 -2.4 preprotein translocase subunit YajC compare
ABIE40_RS16655 -4.1 -6.3 creatininase family protein compare
ABIE40_RS19445 -4.1 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS03405 -4.1 -2.8 anti-sigma factor compare
ABIE40_RS08005 -4.0 -2.8 dihydroxy-acid dehydratase compare
ABIE40_RS20465 -4.0 -2.8 precorrin-6A synthase (deacetylating) compare
ABIE40_RS00930 -3.9 -7.9 ABC transporter permease compare
ABIE40_RS16170 -3.9 -3.8 DUF882 domain-containing protein compare
ABIE40_RS08645 -3.9 -7.4 LL-diaminopimelate aminotransferase compare
ABIE40_RS13965 -3.9 -15.3 AraD1 family protein compare
ABIE40_RS19480 -3.9 -2.7 DUF1402 family protein compare
ABIE40_RS14990 -3.9 -12.1 glycosyltransferase family 2 protein compare
ABIE40_RS11155 -3.9 -7.8 cobaltochelatase subunit CobN compare
ABIE40_RS00935 -3.9 -5.9 ABC transporter substrate-binding protein compare
ABIE40_RS00580 -3.8 -2.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS12135 -3.7 -3.6 methionine synthase compare
ABIE40_RS09090 -3.6 -9.5 nitrogen regulation protein NR(I) compare
ABIE40_RS17590 -3.6 -2.5 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS06730 -3.6 -7.1 riboflavin synthase compare
ABIE40_RS19435 -3.6 -2.2 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS11095 -3.5 -5.8 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS10155 -3.5 -1.9 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS19265 -3.4 -3.0 protein-export chaperone SecB compare
ABIE40_RS09150 -3.4 -12.7 nitrite/sulfite reductase compare
ABIE40_RS06050 -3.3 -7.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS17650 -3.3 -5.8 cobaltochelatase subunit CobS compare
ABIE40_RS05665 -3.3 -5.1 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS16070 -3.3 -4.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS10200 -3.3 -2.1 Grx4 family monothiol glutaredoxin compare
ABIE40_RS20445 -3.2 -1.3 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS08635 -3.2 -14.0 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS20450 -3.2 -3.2 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS05430 -3.2 -4.3 phosphoribosylamine--glycine ligase compare
ABIE40_RS17645 -3.0 -5.7 cobaltochelatase subunit CobT compare
ABIE40_RS09540 -3.0 -6.0 peptidylprolyl isomerase compare
ABIE40_RS06725 -2.9 -5.4 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS06720 -2.9 -2.5 transcriptional regulator NrdR compare
ABIE40_RS14955 -2.9 -9.2 sugar transferase compare
ABIE40_RS09140 -2.8 -9.0 siroheme synthase CysG compare
ABIE40_RS27440 -2.8 -2.1 DUF4112 domain-containing protein compare
ABIE40_RS06440 -2.7 -5.7 Gfo/Idh/MocA family oxidoreductase compare
ABIE40_RS14980 -2.7 -4.2 glycoside hydrolase family 16 protein compare
ABIE40_RS19360 -2.7 -4.7 double-strand break repair helicase AddA compare
ABIE40_RS05155 -2.6 -3.8 DUF5330 domain-containing protein compare
ABIE40_RS22300 -2.6 -5.9 superoxide dismutase compare
ABIE40_RS00725 -2.5 -5.1 DNA cytosine methyltransferase compare
ABIE40_RS09720 -2.5 -4.6 GTP cyclohydrolase I FolE compare
ABIE40_RS11910 -2.4 -7.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
ABIE40_RS01055 -2.4 -6.0 translation elongation factor 4 compare
ABIE40_RS15890 -2.4 -6.9 fructose bisphosphate aldolase compare
ABIE40_RS18880 -2.4 -10.3 UDP-glucose 4-epimerase GalE compare
ABIE40_RS08140 -2.4 -10.7 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS05260 -2.3 -10.4 SMP-30/gluconolactonase/LRE family protein compare
ABIE40_RS01135 -2.3 -0.9 50S ribosomal protein L20 compare
ABIE40_RS08425 -2.3 -2.5 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS14985 -2.3 -2.2 glycosyltransferase compare
ABIE40_RS13960 -2.3 -8.6 multiple monosaccharide ABC transporter permease compare
ABIE40_RS19365 -2.2 -3.9 double-strand break repair protein AddB compare
ABIE40_RS10345 -2.2 -4.0 RNA polymerase-binding protein DksA compare
ABIE40_RS30655 -2.2 -1.8 hypothetical protein compare
ABIE40_RS04475 -2.2 -8.0 phosphoadenylyl-sulfate reductase compare
ABIE40_RS16570 -2.2 -2.8 tetratricopeptide repeat protein compare
ABIE40_RS04465 -2.2 -11.1 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS17560 -2.2 -3.8 cell division ATP-binding protein FtsE compare
ABIE40_RS09770 -2.1 -4.9 D-alanyl-D-alanine carboxypeptidase compare
ABIE40_RS03815 -2.1 -1.8 DUF6101 family protein compare
ABIE40_RS15855 -2.1 -1.7 cell division protein ZapA compare
ABIE40_RS19100 -2.1 -9.3 lytic transglycosylase domain-containing protein compare
ABIE40_RS27160 -2.0 -1.0 low affinity iron permease family protein compare
ABIE40_RS19260 -2.0 -2.7 DNA polymerase III subunit epsilon compare
ABIE40_RS01765 -2.0 -4.6 [protein-PII] uridylyltransferase compare
ABIE40_RS06645 -2.0 -1.7 hypothetical protein compare
ABIE40_RS09170 -2.0 -3.6 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS28120 -2.0 -2.4 MFS transporter compare
ABIE40_RS25325 -1.9 -7.4 DUF3422 family protein compare
ABIE40_RS19615 -1.9 -1.9 DUF1109 domain-containing protein compare
ABIE40_RS19385 -1.9 -6.6 adenosylhomocysteinase compare
ABIE40_RS06775 -1.9 -2.0 DUF177 domain-containing protein compare
ABIE40_RS11060 -1.9 -4.2 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS09425 -1.9 -5.0 peptidylprolyl isomerase compare
ABIE40_RS06565 -1.9 -2.7 AI-2E family transporter compare
ABIE40_RS11875 -1.9 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE40_RS09145 -1.9 -5.0 DUF2849 domain-containing protein compare
ABIE40_RS05165 -1.9 -4.7 peptidoglycan-binding protein compare
ABIE40_RS13285 -1.8 -5.5 N-acetyltransferase compare
ABIE40_RS22100 -1.8 -1.5 helix-turn-helix domain-containing protein compare
ABIE40_RS22660 -1.8 -3.2 class 1b ribonucleoside-diphosphate reductase subunit alpha compare
ABIE40_RS28420 -1.7 -1.4 30S ribosomal protein S21 compare
ABIE40_RS04470 -1.7 -9.6 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS27155 -1.7 -2.3 acetyltransferase compare
ABIE40_RS15010 -1.7 -7.8 metallophosphoesterase compare
ABIE40_RS17385 -1.7 -6.8 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABIE40_RS18970 -1.7 -1.8 murein hydrolase activator EnvC compare
ABIE40_RS19245 -1.7 -3.6 Maf-like protein compare
ABIE40_RS18640 -1.7 -7.1 M48 family metalloprotease compare
ABIE40_RS16210 -1.6 -6.8 homospermidine synthase compare
ABIE40_RS13950 -1.6 -9.5 multiple monosaccharide ABC transporter substrate-binding protein compare
ABIE40_RS28815 -1.6 -4.4 GNAT family N-acetyltransferase compare
ABIE40_RS00925 -1.6 -3.4 ABC transporter permease compare
ABIE40_RS10140 -1.6 -2.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS09085 -1.6 -3.9 nitrogen regulation protein NR(II) compare
ABIE40_RS04770 -1.6 -4.8 TetR/AcrR family transcriptional regulator compare
ABIE40_RS07475 -1.5 -1.9 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
ABIE40_RS15730 -1.5 -2.9 crossover junction endodeoxyribonuclease RuvC compare
ABIE40_RS13955 -1.5 -6.6 multiple monosaccharide ABC transporter ATP-binding protein compare
ABIE40_RS27395 -1.5 -1.1 hypothetical protein compare
ABIE40_RS00960 -1.5 -2.0 formyltetrahydrofolate deformylase compare
ABIE40_RS14850 -1.5 -5.9 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE40_RS29195 -1.5 -2.1 SOS response-associated peptidase family protein compare
ABIE40_RS10415 -1.5 -5.9 ABC-type transport auxiliary lipoprotein family protein compare
ABIE40_RS19455 -1.5 -1.0 DUF2628 domain-containing protein compare
ABIE40_RS14855 -1.4 -5.1 NAD-dependent epimerase compare
ABIE40_RS06710 -1.4 -1.7 L,D-transpeptidase family protein compare
ABIE40_RS26045 -1.4 -2.9 hypothetical protein compare
ABIE40_RS09980 -1.4 -1.8 Fe-S cluster assembly scaffold SufA compare
ABIE40_RS13005 -1.4 -5.4 pyrroline-5-carboxylate reductase compare
ABIE40_RS06275 -1.4 -3.3 CvpA family protein compare
ABIE40_RS05670 -1.4 -4.2 membrane protein compare
ABIE40_RS13370 -1.4 -5.5 CDF family cation efflux transporter EmfA compare
ABIE40_RS03190 -1.3 -3.0 phosphogluconate dehydratase compare
ABIE40_RS21985 -1.3 -3.6 MarR family transcriptional regulator compare
ABIE40_RS18735 -1.3 -4.3 TetR/AcrR family transcriptional regulator compare
ABIE40_RS08980 -1.3 -2.7 transcriptional repressor LexA compare
ABIE40_RS07105 -1.3 -2.0 DNA-binding protein HupB compare
ABIE40_RS18975 -1.3 -6.5 S41 family peptidase compare
ABIE40_RS14940 -1.3 -7.1 acyltransferase compare
ABIE40_RS26610 -1.3 -2.5 hypothetical protein compare
ABIE40_RS10850 -1.3 -3.1 excinuclease ABC subunit UvrB compare
ABIE40_RS19395 -1.3 -1.5 PTS sugar transporter subunit IIA compare
ABIE40_RS06135 -1.3 -3.7 tyrosine phosphatase family protein compare
ABIE40_RS10705 -1.3 -8.8 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS12360 -1.3 -6.0 DUF5131 family protein compare
ABIE40_RS19700 -1.3 -2.0 MBL fold metallo-hydrolase compare
ABIE40_RS05715 -1.3 -3.2 PAS domain-containing sensor histidine kinase compare
ABIE40_RS10515 -1.3 -4.2 glutathione-disulfide reductase compare
ABIE40_RS15455 -1.3 -1.3 histidine phosphatase family protein compare
ABIE40_RS29945 -1.3 -1.9 hypothetical protein compare
ABIE40_RS18300 -1.3 -6.7 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS08865 -1.2 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE40_RS12855 -1.2 -4.9 glycosyltransferase family 2 protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Trisodium citrate dihydrate in Rhizobium sp. OAE497

For carbon source Trisodium citrate dihydrate across organisms