Experiment set1IT031 for Enterobacter asburiae PDN3

Compare to:

MS_media no stress control

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2635 -6.9 -10.4 Fructose-2,6-bisphosphatase compare
EX28DRAFT_2252 -5.4 -2.0 TolA protein compare
EX28DRAFT_4493 -5.2 -5.0 Transcriptional regulator compare
EX28DRAFT_0933 -4.1 -10.9 tryptophan synthase, beta subunit compare
EX28DRAFT_4419 -3.9 -2.1 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_2651 -3.9 -6.3 glutamate 5-kinase compare
EX28DRAFT_4350 -3.8 -1.0 nitrogen regulation protein NR(I) compare
EX28DRAFT_4153 -3.8 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_4478 -3.8 -5.2 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_0932 -3.6 -5.5 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_2027 -3.5 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0934 -3.5 -12.7 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_4184 -3.4 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2272 -3.4 -11.8 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_3730 -3.4 -6.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_2701 -3.4 -5.8 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_3728 -3.3 -2.8 L-aspartate 1-decarboxylase (EC 4.1.1.11) compare
EX28DRAFT_1986 -3.3 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_3224 -3.3 -3.9 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_1121 -3.2 -1.5 Sugar kinases, ribokinase family compare
EX28DRAFT_3276 -3.1 -4.8 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_2916 -3.1 -11.0 diaminopimelate decarboxylase compare
EX28DRAFT_2650 -3.0 -5.8 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_3669 -3.0 -5.7 3-isopropylmalate dehydrogenase compare
EX28DRAFT_2632 -3.0 -10.3 Major Facilitator Superfamily compare
EX28DRAFT_0936 -3.0 -6.3 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_3668 -2.9 -9.9 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_0537 -2.9 -8.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_4446 -2.9 -5.7 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_4421 -2.9 -0.7 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_4156 -2.8 -2.5 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0533 -2.7 -5.5 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_0935 -2.7 -5.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_3667 -2.7 -1.7 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_2851 -2.6 -3.0 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_2893 -2.6 -4.1 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_0523 -2.6 -1.4 Glycosyltransferase like family 2 compare
EX28DRAFT_3729 -2.6 -4.4 pantoate--beta-alanine ligase compare
EX28DRAFT_0046 -2.5 -2.2 shikimate dehydrogenase compare
EX28DRAFT_0535 -2.5 -6.7 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_0538 -2.5 -7.0 histidinol-phosphate aminotransferase compare
EX28DRAFT_0534 -2.5 -4.7 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_3670 -2.4 -5.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_2917 -2.4 -5.0 Transcriptional regulator compare
EX28DRAFT_4422 -2.4 -4.3 argininosuccinate lyase compare
EX28DRAFT_0536 -2.4 -1.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_4341 -2.3 -3.1 Protein-disulfide isomerase compare
EX28DRAFT_0292 -2.3 -1.3 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_2265 -2.3 -0.8 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_4292 -2.3 -5.7 Acetyltransferase (GNAT) domain compare
EX28DRAFT_3275 -2.3 -9.9 Glutamate synthase domain 2 compare
EX28DRAFT_0539 -2.3 -4.3 histidinol dehydrogenase compare
EX28DRAFT_3614 -2.2 -6.0 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_0111 -2.2 -2.2 FeS cluster assembly scaffold IscU compare
EX28DRAFT_4418 -2.2 -6.4 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_0540 -2.1 -4.8 ATP phosphoribosyltransferase compare
EX28DRAFT_4444 -2.1 -5.5 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_3401 -2.0 -1.3 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_3671 -1.9 -3.2 RNA compare
EX28DRAFT_2546 -1.9 -7.0 2-dehydropantoate 2-reductase compare
EX28DRAFT_4386 -1.9 -2.5 Signal transduction histidine kinase compare
EX28DRAFT_0286 -1.8 -1.5 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_3046 -1.7 -6.6 cystathionine beta-lyase, bacterial compare
EX28DRAFT_4420 -1.7 -0.6 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_2043 -1.7 -5.9 transcriptional regulator, AsnC family compare
EX28DRAFT_4443 -1.7 -7.2 dihydroxy-acid dehydratase compare
EX28DRAFT_4445 -1.6 -2.8 Transcriptional regulator compare
EX28DRAFT_2699 -1.6 -3.6 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0531 -1.6 -5.4 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_4170 -1.6 -8.2 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_2846 -1.6 -4.2 adenylyl-sulfate kinase compare
EX28DRAFT_2634 -1.5 -4.9 hypothetical protein compare
EX28DRAFT_0291 -1.5 -1.6 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_3461 -1.5 -2.0 ornithine carbamoyltransferase compare
EX28DRAFT_4296 -1.5 -3.7 putative protein insertion permease FtsX compare
EX28DRAFT_3754 -1.5 -0.9 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_4280 -1.5 -1.2 Protein of unknown function (DUF2756) compare
EX28DRAFT_2541 -1.5 -1.5 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_1841 -1.5 -1.5 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_1123 -1.4 -5.9 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_0108 -1.4 -1.1 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_4411 -1.4 -6.0 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_2271 -1.4 -4.8 hypothetical protein compare
EX28DRAFT_0494 -1.3 -1.1 Protein-tyrosine-phosphatase compare
EX28DRAFT_0526 -1.3 -2.3 hypothetical protein compare
EX28DRAFT_0038 -1.3 -1.6 K+ transport systems, NAD-binding component compare
EX28DRAFT_4331 -1.3 -5.2 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_3879 -1.3 -3.1 Glycosyltransferase compare
EX28DRAFT_2267 -1.3 -4.8 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_2945 -1.3 -2.3 tyrosine recombinase XerD compare
EX28DRAFT_3079 -1.3 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3245 -1.2 -2.2 Predicted NTP binding protein (contains STAS domain) compare
EX28DRAFT_2400 -1.2 -0.9 Cold shock proteins compare
EX28DRAFT_2958 -1.2 -1.5 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_3883 -1.2 -2.7 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_4507 -1.2 -3.0 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_1626 -1.2 -2.3 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_2585 -1.2 -0.9 pyrroline-5-carboxylate reductase compare
EX28DRAFT_2633 -1.2 -1.7 Uncharacterised nucleotidyltransferase compare
EX28DRAFT_2270 -1.2 -0.8 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_4271 -1.2 -0.7 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_3616 -1.2 -1.4 threonine synthase compare
EX28DRAFT_3089 -1.1 -1.0 Transcriptional regulators compare
EX28DRAFT_2702 -1.1 -3.3 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_3613 -1.1 -2.5 RNA compare
EX28DRAFT_4505 -1.1 -3.0 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_0167 -1.1 -1.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_0214 -1.1 -2.6 cysteine synthase A compare
EX28DRAFT_2852 -1.1 -5.5 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_1122 -1.1 -5.5 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_2216 -1.1 -4.4 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_2853 -1.1 -3.3 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_2531 -1.1 -2.3 endopeptidase La compare
EX28DRAFT_0092 -1.1 -0.5 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_0069 -1.0 -1.8 Superfamily II DNA and RNA helicases compare
EX28DRAFT_2492 -1.0 -2.6 Protein of unknown function (DUF2496) compare
EX28DRAFT_0202 -1.0 -1.9 Protein of unknown function (DUF2919) compare
EX28DRAFT_3710 -1.0 -3.8 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_4442 -1.0 -2.9 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_3285 -1.0 -4.0 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_3253 -1.0 -1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4077 -1.0 -1.0 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_0545 -1.0 -2.4 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_4297 -0.9 -1.2 cell division ATP-binding protein FtsE compare
EX28DRAFT_0272 -0.9 -1.0 phosphohistidine phosphatase, SixA compare
EX28DRAFT_2938 -0.9 -1.6 tRNA compare
EX28DRAFT_0190 -0.9 -1.0 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_1124 -0.9 -5.9 sucrose-6-phosphate hydrolase compare
EX28DRAFT_2045 -0.9 -0.8 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_2240 -0.9 -1.8 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_2268 -0.9 -4.9 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_3082 -0.9 -2.3 Uncharacterized conserved protein compare
EX28DRAFT_2964 -0.8 -2.3 5,10-methenyltetrahydrofolate synthetase compare
EX28DRAFT_0076 -0.8 -2.8 elongation factor 4 compare
EX28DRAFT_1402 -0.8 -1.5 Glyoxalase-like domain compare
EX28DRAFT_0779 -0.8 -3.4 hypothetical protein compare
EX28DRAFT_3519 -0.8 -1.0 Predicted transcriptional regulators compare
EX28DRAFT_0521 -0.8 -2.0 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0697 -0.8 -1.0 ABC-type Mn2+/Zn2+ transport systems, permease components compare
EX28DRAFT_1763 -0.8 -1.2 Glutamate dehydrogenase/leucine dehydrogenase compare
EX28DRAFT_2848 -0.8 -5.2 sulfate adenylyltransferase, small subunit compare
EX28DRAFT_2543 -0.8 -3.9 protoheme IX farnesyltransferase compare
EX28DRAFT_2946 -0.8 -2.8 flavodoxin, long chain compare
EX28DRAFT_4085 -0.8 -4.3 Predicted xylanase/chitin deacetylase compare
EX28DRAFT_3645 -0.8 -2.6 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_0861 -0.8 -4.0 Response regulator receiver domain compare
EX28DRAFT_1750 -0.8 -2.6 succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
EX28DRAFT_1573 -0.8 -0.8 hypothetical protein compare
EX28DRAFT_4452 -0.8 -1.7 thioredoxin compare
EX28DRAFT_0726 -0.8 -1.6 C-terminal peptidase (prc) compare
EX28DRAFT_1500 -0.8 -1.4 Predicted transcriptional regulators compare
EX28DRAFT_4086 -0.7 -5.8 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family compare
EX28DRAFT_1823 -0.7 -2.3 Beta-glucosidase-related glycosidases compare
EX28DRAFT_1644 -0.7 -1.5 Predicted oxidoreductase compare
EX28DRAFT_3901 -0.7 -4.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_1845 -0.7 -1.3 RNA compare
EX28DRAFT_2170 -0.7 -1.5 hypothetical protein compare
EX28DRAFT_0874 -0.7 -2.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3070 -0.7 -1.1 Predicted phosphohydrolases compare
EX28DRAFT_0322 -0.7 -4.6 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_2944 -0.7 -1.3 Protein-disulfide isomerase compare
EX28DRAFT_4266 -0.7 -1.1 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_2269 -0.7 -3.5 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_0328 -0.7 -1.0 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_2421 -0.7 -1.0 Protein of unknown function (DUF1158) compare
EX28DRAFT_4380 -0.7 -0.7 Protein of unknown function (DUF1471) compare
EX28DRAFT_2847 -0.7 -5.1 sulfate adenylyltransferase, large subunit compare
EX28DRAFT_0332 -0.7 -4.4 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0333 -0.7 -3.3 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0497 -0.7 -1.3 colanic acid biosynthesis acetyltransferase WcaB compare
EX28DRAFT_3302 -0.7 -4.4 diguanylate cyclase (GGDEF) domain compare
EX28DRAFT_3597 -0.6 -1.6 DNA repair protein RadA compare
EX28DRAFT_3045 -0.6 -1.9 tonB-system energizer ExbB compare
EX28DRAFT_4349 -0.6 -0.7 hypothetical protein compare
EX28DRAFT_0091 -0.6 -0.4 hypothetical protein compare
EX28DRAFT_4212 -0.6 -0.5 Acetyltransferase (GNAT) family compare
EX28DRAFT_2255 -0.6 -1.1 tol-pal system-associated acyl-CoA thioesterase compare
EX28DRAFT_1029 -0.6 -1.1 ABC-type spermidine/putrescine transport system, permease component II compare
EX28DRAFT_1590 -0.6 -1.2 hypothetical protein compare
EX28DRAFT_1877 -0.6 -1.6 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
EX28DRAFT_2927 -0.6 -2.7 Transcriptional regulators compare
EX28DRAFT_0770 -0.6 -1.6 Transglycosylase SLT domain compare
EX28DRAFT_0732 -0.6 -1.8 YebO-like protein compare
EX28DRAFT_0621 -0.6 -1.3 flagellar biosynthetic protein FliS compare
EX28DRAFT_4155 -0.6 -1.7 DNA adenine methylase (dam) compare
EX28DRAFT_3418 -0.6 -0.6 Bacterial regulatory helix-turn-helix protein, lysR family compare
EX28DRAFT_0444 -0.6 -1.6 Protein-tyrosine-phosphatase compare
EX28DRAFT_2148 -0.6 -3.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3825 -0.6 -1.7 YsaB-like lipoprotein compare
EX28DRAFT_0074 -0.6 -3.9 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_2849 -0.6 -2.5 uroporphyrin-III C-methyltransferase compare
EX28DRAFT_0107 -0.6 -1.8 RNA methyltransferase, TrmH family, group 1 compare
EX28DRAFT_3036 -0.6 -2.7 RNA compare
EX28DRAFT_0330 -0.6 -1.3 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_1549 -0.6 -2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_0181 -0.6 -3.0 Glycine cleavage system regulatory protein compare
EX28DRAFT_3408 -0.6 -3.3 Uncharacterized conserved protein compare
EX28DRAFT_4347 -0.6 -0.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2425 -0.6 -0.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3876 -0.6 -4.2 Lipid A core - O-antigen ligase and related enzymes compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in no stress control experiments