Experiment set1IT030 for Pseudomonas simiae WCS417

Compare to:

D-Glucose-6-Phosphate sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -6.2 -5.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_27040 -5.6 -4.8 3-phosphoglycerate dehydrogenase compare
PS417_02005 -5.3 -15.5 glutamate synthase compare
PS417_18595 -5.1 -5.2 3-isopropylmalate dehydratase compare
PS417_25720 -4.9 -12.3 anthranilate synthase component II compare
PS417_00185 -4.8 -4.6 tryptophan synthase subunit beta compare
PS417_01575 -4.7 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23545 -4.7 -6.4 gamma-glutamyl kinase compare
PS417_18560 -4.7 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23805 -4.7 -8.3 acetolactate synthase 3 regulatory subunit compare
PS417_26740 -4.5 -14.5 homoserine acetyltransferase compare
PS417_25725 -4.5 -17.2 anthranilate synthase component I compare
PS417_23800 -4.5 -16.5 ketol-acid reductoisomerase compare
PS417_02510 -4.4 -9.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_20985 -4.4 -6.2 porin compare
PS417_18585 -4.3 -9.6 3-isopropylmalate dehydrogenase compare
PS417_04415 -4.1 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_24745 -4.1 -6.6 gamma-glutamyl phosphate reductase compare
PS417_18530 -4.1 -6.2 O-succinylhomoserine sulfhydrylase compare
PS417_18600 -4.0 -4.7 isopropylmalate isomerase compare
PS417_00180 -4.0 -4.6 tryptophan synthase subunit alpha compare
PS417_02000 -4.0 -15.8 glutamate synthase compare
PS417_26745 -4.0 -6.2 methionine biosynthesis protein MetW compare
PS417_27795 -4.0 -2.0 orotate phosphoribosyltransferase compare
PS417_26730 -3.9 -2.0 pyrroline-5-carboxylate reductase compare
PS417_23810 -3.8 -15.3 acetolactate synthase 3 catalytic subunit compare
PS417_27195 -3.8 -1.9 N-acetylglutamate synthase compare
PS417_12290 -3.8 -10.5 sulfite reductase compare
PS417_16465 -3.7 -13.5 sirohydrochlorin ferrochelatase compare
PS417_12855 -3.7 -7.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04420 -3.7 -11.0 histidinol dehydrogenase compare
PS417_01850 -3.7 -7.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01605 -3.6 -3.2 phosphoglycerate mutase compare
PS417_01580 -3.4 -1.4 imidazole glycerol phosphate synthase compare
PS417_02415 -3.1 -6.8 phosphoserine phosphatase compare
PS417_01565 -3.1 -3.5 imidazole glycerol phosphate synthase compare
PS417_08125 -3.1 -2.1 prephenate dehydratase compare
PS417_25710 -3.1 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_05595 -3.0 -8.9 ornithine carbamoyltransferase compare
PS417_09725 -3.0 -11.4 transporter compare
PS417_23110 -2.9 -6.8 2-isopropylmalate synthase compare
PS417_26890 -2.9 -6.2 dihydroxy-acid dehydratase compare
PS417_24155 -2.9 -4.1 ATP-binding protein compare
PS417_01570 -2.6 -3.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_14940 -2.6 -3.5 LysR family transcriptional regulator compare
PS417_06375 -2.6 -1.5 deoxycytidine triphosphate deaminase compare
PS417_25715 -2.6 -3.4 anthranilate phosphoribosyltransferase compare
PS417_21035 -2.6 -11.0 multidrug transporter compare
PS417_22685 -2.4 -10.7 Glucokinase (EC 2.7.1.2) (from data) conserved
PS417_03310 -2.4 -7.1 carbonate dehydratase compare
PS417_20610 -2.3 -2.7 hypothetical protein compare
PS417_22135 -2.3 -11.9 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_22130 -2.3 -5.4 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_01710 -2.2 -5.3 histidine utilization repressor compare
PS417_23995 -2.2 -1.5 preprotein translocase subunit SecG compare
PS417_22140 -2.2 -10.4 glucose/xylose ABC transporter, permease component 2 (from data) compare
PS417_08195 -2.1 -8.6 hypothetical protein compare
PS417_08200 -2.1 -4.8 hypothetical protein compare
PS417_22145 -2.0 -9.0 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_08205 -2.0 -5.4 acetyltransferase compare
PS417_20160 -2.0 -4.3 cysteine synthase compare
PS417_22680 -2.0 -6.8 chemotaxis protein CheY compare
PS417_28220 -1.9 -3.4 LysR family transcriptional regulator compare
PS417_26995 -1.9 -9.2 phosphoserine phosphatase compare
PS417_08225 -1.8 -6.5 acetolactate synthase compare
PS417_27010 -1.8 -9.5 threonine dehydratase compare
PS417_08230 -1.8 -3.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_04595 -1.7 -4.0 cell division protein MraZ compare
PS417_16490 -1.7 -3.5 cell division protein FtsK compare
PS417_24835 -1.7 -5.6 hypothetical protein compare
PS417_22520 -1.7 -3.8 histidine kinase compare
PS417_21705 -1.7 -4.5 arginine N-succinyltransferase compare
PS417_16005 -1.6 -4.2 ATPase compare
PS417_08155 -1.5 -2.7 integration host factor subunit beta compare
PS417_21750 -1.5 -11.9 acetyl-CoA synthetase compare
PS417_16990 -1.5 -6.6 acyl-CoA dehydrogenase compare
PS417_17480 -1.5 -5.7 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_22675 -1.5 -6.3 histidine kinase compare
PS417_19065 -1.4 -1.8 monooxygenase compare
PS417_28050 -1.3 -2.8 hypothetical protein compare
PS417_26040 -1.3 -3.4 malate synthase compare
PS417_26985 -1.3 -4.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_25940 -1.3 -6.8 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_22690 -1.3 -4.3 phosphogluconate dehydratase compare
PS417_20125 -1.3 -4.2 phosphoribosylglycinamide formyltransferase compare
PS417_19335 -1.3 -2.0 isochorismatase compare
PS417_20665 -1.2 -4.6 hypothetical protein compare
PS417_17485 -1.2 -4.5 membrane protein compare
PS417_21690 -1.2 -6.6 N-succinylarginine dihydrolase compare
PS417_03925 -1.2 -7.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_17490 -1.2 -2.0 ABC transporter ATP-binding protein compare
PS417_08245 -1.2 -1.3 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27875 -1.2 -5.1 histidine kinase compare
PS417_27835 -1.2 -4.8 endoribonuclease compare
PS417_10040 -1.2 -1.3 MFS transporter compare
PS417_22445 -1.2 -3.6 ATP-dependent DNA helicase RuvB compare
PS417_25920 -1.2 -5.4 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_23770 -1.2 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_01560 -1.1 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_22385 -1.1 -6.8 quinolinate synthase A compare
PS417_04650 -1.1 -1.3 D-alanine--D-alanine ligase compare
PS417_18445 -1.1 -2.2 glycerol-3-phosphatase compare
PS417_17495 -1.0 -4.8 multidrug ABC transporter permease compare
PS417_08580 -1.0 -5.4 histidine kinase compare
PS417_24765 -1.0 -3.2 membrane protein compare
PS417_17505 -1.0 -3.3 LuxR family transcriptional regulator compare
PS417_03560 -1.0 -1.9 GTP-binding protein compare
PS417_25930 -1.0 -4.3 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_17435 -1.0 -7.0 dehydrogenase compare
PS417_26605 -1.0 -1.3 malonate decarboxylase subunit beta compare
PS417_08220 -1.0 -0.8 epimerase compare
PS417_08990 -1.0 -2.4 ABC transporter substrate-binding protein compare
PS417_23775 -0.9 -2.1 exodeoxyribonuclease V subunit beta compare
PS417_15750 -0.9 -2.2 protease compare
PS417_13800 -0.9 -1.9 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_21210 -0.9 -2.0 amidotransferase compare
PS417_04180 -0.9 -3.7 GntR family transcriptional regulator compare
PS417_17455 -0.9 -3.0 cytochrome C compare
PS417_05840 -0.9 -3.2 LuxR family transcriptional regulator compare
PS417_18395 -0.9 -2.4 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_04410 -0.9 -0.9 hypothetical protein compare
PS417_09915 -0.9 -1.8 hypothetical protein compare
PS417_24370 -0.9 -1.0 (2Fe-2S)-binding protein compare
PS417_07170 -0.9 -3.0 hypothetical protein compare
PS417_21000 -0.9 -1.7 CrfX protein compare
PS417_06200 -0.9 -3.4 protein-PII uridylyltransferase compare
PS417_13165 -0.9 -1.9 peroxidase compare
PS417_10145 -0.9 -2.1 hypothetical protein compare
PS417_02720 -0.9 -0.9 TetR family transcriptional regulator compare
PS417_22210 -0.8 -1.8 AraC family transcriptional regulator compare
PS417_22500 -0.8 -6.3 porin compare
PS417_02770 -0.8 -3.2 membrane protein compare
PS417_21700 -0.8 -2.9 arginine N-succinyltransferase compare
PS417_08380 -0.8 -3.8 ABC transporter ATP-binding protein compare
PS417_13305 -0.8 -1.4 hypothetical protein compare
PS417_24785 -0.8 -1.6 nucleoside-diphosphate sugar epimerase compare
PS417_17420 -0.8 -2.8 ethanol oxidation regulatory protein ercA (from data) compare
PS417_18055 -0.8 -1.6 general secretion pathway protein GspK compare
PS417_13295 -0.8 -3.3 TetR family transcriptional regulator compare
PS417_27515 -0.8 -4.0 heme biosynthesis protein HemY compare
PS417_20030 -0.8 -2.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_06895 -0.8 -1.8 DNA-binding protein compare
PS417_06100 -0.8 -1.4 SAM-dependent methyltransferase compare
PS417_27305 -0.8 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
PS417_03260 -0.8 -1.5 5S ribosomal RNA compare
PS417_02225 -0.8 -1.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_17450 -0.8 -3.5 amino acid ABC transporter substrate-binding protein compare
PS417_27535 -0.8 -4.9 chemotaxis protein CheY compare
PS417_07305 -0.7 -1.1 3-beta hydroxysteroid dehydrogenase compare
PS417_16055 -0.7 -2.5 biopolymer transporter TolR compare
PS417_00485 -0.7 -2.2 ABC transporter permease compare
PS417_08740 -0.7 -1.9 ribose-phosphate pyrophosphokinase compare
PS417_05095 -0.7 -3.0 membrane protein compare
PS417_20620 -0.7 -3.1 glycosyl transferase family 2 compare
PS417_11885 -0.7 -2.4 Inositol transport system sugar-binding protein (from data) compare
PS417_02895 -0.7 -1.8 precorrin-6Y C5,15-methyltransferase compare
PS417_04050 -0.7 -1.9 peptide ABC transporter ATP-binding protein compare
PS417_25175 -0.7 -2.4 hypothetical protein compare
PS417_21480 -0.7 -1.2 23S rRNA pseudouridylate synthase compare
PS417_03815 -0.7 -1.8 DNA transporter compare
PS417_10305 -0.7 -2.1 hypothetical protein compare
PS417_08730 -0.7 -2.0 cytochrome C compare
PS417_13075 -0.7 -1.0 hypothetical protein compare
PS417_15285 -0.7 -1.0 type VI secretion protein compare
PS417_09720 -0.7 -2.5 methyltransferase compare
PS417_16715 -0.7 -1.6 DoxX family protein compare
PS417_09705 -0.7 -2.6 hypothetical protein compare
PS417_11670 -0.7 -1.4 multidrug transporter MATE compare
PS417_20645 -0.7 -4.7 membrane protein compare
PS417_22150 -0.7 -1.9 D-mannose isomerase (EC 5.3.1.7) (from data) compare
PS417_15540 -0.7 -1.2 NUDIX hydrolase compare
PS417_18435 -0.7 -2.0 hypothetical protein compare
PS417_12310 -0.7 -4.2 methionine synthase compare
PS417_04860 -0.7 -5.0 ATPase compare
PS417_13490 -0.7 -1.3 hypothetical protein compare
PS417_17425 -0.7 -2.3 hypothetical protein compare
PS417_17415 -0.7 -1.9 histidine kinase compare
PS417_17705 -0.7 -2.4 LacI family transcriptional regulator compare
PS417_11520 -0.7 -1.5 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_25390 -0.7 -2.8 MFS transporter compare
PS417_21980 -0.7 -3.7 permease DsdX compare
PS417_18965 -0.7 -1.5 dienelactone hydrolase compare
PS417_18425 -0.6 -1.1 sporulation protein compare
PS417_17215 -0.6 -2.8 peptidylprolyl isomerase compare
PS417_08045 -0.6 -1.2 uracil permease compare
PS417_19705 -0.6 -1.9 flagellar biosynthesis regulator FlhF compare
PS417_01885 -0.6 -2.3 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_28510 -0.6 -3.5 chromosome partitioning protein compare
PS417_00295 -0.6 -3.6 hypothetical protein compare
PS417_20170 -0.6 -1.7 hypothetical protein compare
PS417_16520 -0.6 -1.6 cold-shock protein compare
PS417_14935 -0.6 -1.4 transposase compare
PS417_15585 -0.6 -1.8 DNA repair nucleotidyltransferase compare
PS417_00825 -0.6 -1.9 recombinase RecF compare
PS417_09325 -0.6 -2.0 peptidase S41 compare
PS417_22780 -0.6 -2.1 XRE family transcriptional regulator compare
PS417_13870 -0.6 -1.1 hypothetical protein compare
PS417_14710 -0.6 -1.1 isochorismatase compare
PS417_15305 -0.6 -1.8 type VI secretion protein compare
PS417_26240 -0.6 -1.6 N-methylproline demethylase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Glucose-6-Phosphate sodium salt in Pseudomonas simiae WCS417

For carbon source D-Glucose-6-Phosphate sodium salt across organisms