Experiment set1IT030 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with Thallium(I) acetate 0.001 mg/ml

Group: stress
Media: marine_broth_2216 + Thallium(I) acetate (0.001 mg/ml)
Culturing: Ponti_ML7, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.6 generations
By: Adam on 29-Mar-17
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 1731 C5

Specific Phenotypes

For 52 genes in this experiment

For stress Thallium(I) acetate in Pontibacter actiniarum KMM 6156, DSM 19842

For stress Thallium(I) acetate across organisms

SEED Subsystems

Subsystem #Specific
NAD and NADP cofactor biosynthesis global 2
Acetyl-CoA fermentation to Butyrate 1
Anaerobic respiratory reductases 1
Arsenic resistance 1
Butanol Biosynthesis 1
Chitin and N-acetylglucosamine utilization 1
Fermentations: Mixed acid 1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis 1
Glutathione: Non-redox reactions 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Isobutyryl-CoA to Propionyl-CoA Module 1
Isoleucine degradation 1
Maltose and Maltodextrin Utilization 1
Methylglyoxal Metabolism 1
N-Acetyl-Galactosamine and Galactosamine Utilization 1
Nitrate and nitrite ammonification 1
Oxidative stress 1
Propionyl-CoA to Succinyl-CoA Module 1
Serine-glyoxylate cycle 1
Thiamin biosynthesis 1
Ton and Tol transport systems 1
Transport of Zinc 1
Trehalose Biosynthesis 1
Valine degradation 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
hydroxymethylpyrimidine salvage 2 2 2
acetaldehyde biosynthesis I 1 1 1
neolinustatin bioactivation 3 2 2
thiamine diphosphate salvage II 5 4 3
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I 2 2 1
thiamine diphosphate biosynthesis I (E. coli) 2 2 1
L-glutamate degradation II 2 2 1
thiamine diphosphate biosynthesis II (Bacillus) 2 2 1
linustatin bioactivation 4 2 2
lotaustralin degradation 2 1 1
ethanol degradation I 2 1 1
linamarin degradation 2 1 1
pyruvate fermentation to ethanol II 2 1 1
thiamine diphosphate salvage IV (yeast) 7 3 3
L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde 5 5 2
3-hydroxy-4-methyl-anthranilate biosynthesis II 5 4 2
thiamine diphosphate formation from pyrithiamine and oxythiamine (yeast) 8 3 3
L-methionine degradation II 3 3 1
ethanol degradation II 3 3 1
L-cysteine degradation II 3 3 1
L-tryptophan degradation I (via anthranilate) 3 3 1
propanoyl CoA degradation I 3 3 1
L-serine degradation 3 3 1
D-serine degradation 3 3 1
L-aspartate degradation III (anaerobic) 3 2 1
thiamine diphosphate salvage V 3 2 1
L-isoleucine degradation II 3 2 1
methylglyoxal degradation VIII 3 2 1
methylglyoxal degradation I 3 2 1
L-leucine degradation III 3 2 1
L-tryptophan degradation II (via pyruvate) 3 2 1
L-valine degradation II 3 2 1
L-aspartate degradation II (aerobic) 3 2 1
cellulose degradation II (fungi) 3 2 1
chitin degradation II (Vibrio) 6 3 2
pyruvate fermentation to ethanol III 3 1 1
thiamine diphosphate biosynthesis IV (eukaryotes) 3 1 1
thiamine diphosphate biosynthesis III (Staphylococcus) 3 1 1
L-methionine degradation III 3 1 1
pyruvate fermentation to ethanol I 3 1 1
phosphatidylcholine biosynthesis V 3 1 1
conversion of succinate to propanoate 3 1 1
superpathway of thiamine diphosphate biosynthesis III (eukaryotes) 7 3 2
phytol degradation 4 3 1
2-oxobutanoate degradation I 4 3 1
superpathway of L-aspartate and L-asparagine biosynthesis 4 3 1
L-phenylalanine degradation III 4 2 1
L-tyrosine degradation III 4 2 1
cytidine-5'-diphosphate-glycerol biosynthesis 4 1 1
salidroside biosynthesis 4 1 1
NAD de novo biosynthesis II (from tryptophan) 9 9 2
superpathway of thiamine diphosphate biosynthesis I 10 9 2
pyruvate fermentation to isobutanol (engineered) 5 4 1
felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis 5 2 1
coumarin biosynthesis (via 2-coumarate) 5 2 1
phenylethanol biosynthesis 5 1 1
(S)-propane-1,2-diol degradation 5 1 1
acetylene degradation (anaerobic) 5 1 1
ethanolamine utilization 5 1 1
superpathway of thiamine diphosphate biosynthesis II 11 9 2
glycogen degradation II 6 5 1
pyruvate fermentation to butanol II (engineered) 6 5 1
L-tryptophan degradation IX 12 7 2
L-methionine biosynthesis II 6 3 1
3-hydroxy-4-methyl-anthranilate biosynthesis I 6 3 1
L-threonine degradation I 6 2 1
L-canavanine degradation II 6 1 1
α-tomatine degradation 6 1 1
noradrenaline and adrenaline degradation 13 4 2
L-isoleucine biosynthesis I (from threonine) 7 6 1
3-methylbutanol biosynthesis (engineered) 7 6 1
superpathway of NAD biosynthesis in eukaryotes 14 11 2
pyruvate fermentation to propanoate I 7 4 1
glycine betaine degradation III 7 4 1
serotonin degradation 7 3 1
chitin degradation III (Serratia) 7 3 1
L-tryptophan degradation III (eukaryotic) 15 10 2
L-tryptophan degradation XI (mammalian, via kynurenine) 23 11 3
glycine betaine degradation I 8 4 1
superpathway of methylglyoxal degradation 8 4 1
L-mimosine degradation 8 4 1
butanol and isobutanol biosynthesis (engineered) 8 3 1
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II 8 2 1
glutathione-mediated detoxification I 8 2 1
superpathway of fermentation (Chlamydomonas reinhardtii) 9 2 1
anaerobic energy metabolism (invertebrates, mitochondrial) 10 6 1
peptidoglycan recycling II 10 3 1
pyruvate fermentation to hexanol (engineered) 11 7 1
L-glutamate degradation VIII (to propanoate) 11 4 1
L-tryptophan degradation XII (Geobacillus) 12 6 1
arsenic detoxification (yeast) 12 4 1
superpathway of L-isoleucine biosynthesis I 13 11 1
3-hydroxypropanoate cycle 13 8 1
superpathway of Clostridium acetobutylicum solventogenic fermentation 13 6 1
(S)-lactate fermentation to propanoate, acetate and hydrogen 13 6 1
L-tryptophan degradation V (side chain pathway) 13 1 1
peptidoglycan recycling I 14 7 1
crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered) 14 3 1
hypoglycin biosynthesis 14 3 1
firefly bioluminescence 14 2 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 11 1
mixed acid fermentation 16 10 1
superpathway of L-methionine salvage and degradation 16 9 1
superpathway of branched chain amino acid biosynthesis 17 16 1
superpathway of anaerobic energy metabolism (invertebrates) 17 11 1
superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation 17 6 1
heterolactic fermentation 18 11 1
3-hydroxypropanoate/4-hydroxybutanate cycle 18 11 1
superpathway of L-threonine metabolism 18 10 1
superpathway of the 3-hydroxypropanoate cycle 18 8 1
superpathway of anaerobic sucrose degradation 19 13 1
hexitol fermentation to lactate, formate, ethanol and acetate 19 11 1
methylaspartate cycle 19 11 1
superpathway of N-acetylneuraminate degradation 22 11 1
purine nucleobases degradation II (anaerobic) 24 13 1
1-butanol autotrophic biosynthesis (engineered) 27 19 1
superpathway of aromatic compound degradation via 3-oxoadipate 35 8 1
superpathway of aromatic compound degradation via 2-hydroxypentadienoate 42 8 1