Experiment set1IT030 for Enterobacter asburiae PDN3

Compare to:

MS_media no stress control

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2635 -5.5 -11.5 Fructose-2,6-bisphosphatase compare
EX28DRAFT_0536 -5.5 -2.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_2027 -4.5 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_4419 -4.0 -2.1 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_4418 -3.7 -7.4 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) compare
EX28DRAFT_0933 -3.6 -12.8 tryptophan synthase, beta subunit compare
EX28DRAFT_3276 -3.6 -5.7 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_0534 -3.6 -4.8 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_0537 -3.6 -9.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2701 -3.5 -8.2 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_0936 -3.5 -5.8 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0538 -3.5 -5.9 histidinol-phosphate aminotransferase compare
EX28DRAFT_2916 -3.5 -8.7 diaminopimelate decarboxylase compare
EX28DRAFT_0934 -3.3 -11.9 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_0935 -3.2 -9.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_0932 -3.2 -5.1 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_2585 -3.1 -1.7 pyrroline-5-carboxylate reductase compare
EX28DRAFT_3729 -3.1 -6.2 pantoate--beta-alanine ligase compare
EX28DRAFT_4544 -3.1 -0.8 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_3669 -3.0 -6.0 3-isopropylmalate dehydrogenase compare
EX28DRAFT_4493 -3.0 -5.1 Transcriptional regulator compare
EX28DRAFT_4444 -3.0 -6.9 threonine ammonia-lyase, biosynthetic, long form compare
EX28DRAFT_2893 -3.0 -5.7 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_2651 -3.0 -4.5 glutamate 5-kinase compare
EX28DRAFT_1121 -2.9 -1.9 Sugar kinases, ribokinase family compare
EX28DRAFT_4421 -2.9 -0.8 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_3224 -2.9 -3.9 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_4422 -2.8 -4.7 argininosuccinate lyase compare
EX28DRAFT_2632 -2.8 -9.6 Major Facilitator Superfamily compare
EX28DRAFT_4478 -2.8 -4.2 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_4153 -2.8 -2.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_3668 -2.7 -8.6 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_0533 -2.7 -4.2 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
EX28DRAFT_2650 -2.7 -4.6 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_3728 -2.7 -2.4 L-aspartate 1-decarboxylase (EC 4.1.1.11) compare
EX28DRAFT_2272 -2.6 -9.6 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0540 -2.6 -6.1 ATP phosphoribosyltransferase compare
EX28DRAFT_2851 -2.6 -3.3 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_4446 -2.6 -7.1 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_4292 -2.6 -6.5 Acetyltransferase (GNAT) domain compare
EX28DRAFT_0046 -2.4 -2.2 shikimate dehydrogenase compare
EX28DRAFT_0539 -2.4 -6.4 histidinol dehydrogenase compare
EX28DRAFT_0535 -2.3 -4.1 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_2252 -2.3 -2.2 TolA protein compare
EX28DRAFT_2917 -2.3 -3.6 Transcriptional regulator compare
EX28DRAFT_0292 -2.3 -1.3 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_3275 -2.3 -10.7 Glutamate synthase domain 2 compare
EX28DRAFT_3670 -2.2 -5.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_3667 -2.2 -2.5 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_3614 -2.2 -5.2 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_4443 -2.2 -7.5 dihydroxy-acid dehydratase compare
EX28DRAFT_0272 -2.1 -1.9 phosphohistidine phosphatase, SixA compare
EX28DRAFT_1719 -2.1 -1.7 integration host factor, alpha subunit compare
EX28DRAFT_3401 -2.1 -1.2 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_4331 -2.0 -6.5 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_2546 -2.0 -6.6 2-dehydropantoate 2-reductase compare
EX28DRAFT_4386 -2.0 -2.6 Signal transduction histidine kinase compare
EX28DRAFT_4297 -1.9 -1.8 cell division ATP-binding protein FtsE compare
EX28DRAFT_4156 -1.9 -2.4 ribulose-phosphate 3-epimerase compare
EX28DRAFT_3730 -1.9 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_2945 -1.9 -2.7 tyrosine recombinase XerD compare
EX28DRAFT_2271 -1.9 -5.2 hypothetical protein compare
EX28DRAFT_4445 -1.9 -4.4 Transcriptional regulator compare
EX28DRAFT_4184 -1.9 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4420 -1.8 -0.6 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_4341 -1.8 -2.5 Protein-disulfide isomerase compare
EX28DRAFT_3613 -1.7 -4.0 RNA compare
EX28DRAFT_3671 -1.6 -2.8 RNA compare
EX28DRAFT_3046 -1.6 -5.7 cystathionine beta-lyase, bacterial compare
EX28DRAFT_4350 -1.6 -0.7 nitrogen regulation protein NR(I) compare
EX28DRAFT_4411 -1.5 -6.5 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_2043 -1.5 -5.7 transcriptional regulator, AsnC family compare
EX28DRAFT_3754 -1.5 -0.9 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_2634 -1.5 -5.3 hypothetical protein compare
EX28DRAFT_2531 -1.5 -2.5 endopeptidase La compare
EX28DRAFT_0494 -1.4 -1.5 Protein-tyrosine-phosphatase compare
EX28DRAFT_0972 -1.4 -1.3 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_2699 -1.4 -3.6 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_1123 -1.4 -5.9 PTS system, sucrose-specific IIBC component compare
EX28DRAFT_2938 -1.4 -2.1 tRNA compare
EX28DRAFT_0091 -1.4 -0.8 hypothetical protein compare
EX28DRAFT_4170 -1.4 -6.2 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_4212 -1.4 -0.9 Acetyltransferase (GNAT) family compare
EX28DRAFT_0531 -1.4 -5.1 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_3711 -1.4 -0.7 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_4452 -1.3 -2.2 thioredoxin compare
EX28DRAFT_4442 -1.3 -3.3 branched-chain amino acid aminotransferase, group I compare
EX28DRAFT_3710 -1.3 -6.1 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_3879 -1.3 -3.3 Glycosyltransferase compare
EX28DRAFT_4280 -1.3 -0.9 Protein of unknown function (DUF2756) compare
EX28DRAFT_2250 -1.3 -2.2 peptidoglycan-associated lipoprotein compare
EX28DRAFT_2846 -1.2 -3.6 adenylyl-sulfate kinase compare
EX28DRAFT_0111 -1.2 -1.6 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0286 -1.2 -1.8 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_3368 -1.2 -1.1 tRNA dimethylallyltransferase compare
EX28DRAFT_0167 -1.2 -1.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_0076 -1.2 -3.0 elongation factor 4 compare
EX28DRAFT_2633 -1.2 -1.7 Uncharacterised nucleotidyltransferase compare
EX28DRAFT_0228 -1.2 -1.3 tRNA compare
EX28DRAFT_1956 -1.2 -1.0 hypothetical protein compare
EX28DRAFT_0068 -1.1 -1.3 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_2677 -1.1 -1.3 hypothetical protein compare
EX28DRAFT_1124 -1.1 -7.9 sucrose-6-phosphate hydrolase compare
EX28DRAFT_4152 -1.1 -1.0 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_0190 -1.1 -1.1 transcriptional regulator, Spx/MgsR family compare
EX28DRAFT_0526 -1.1 -2.0 hypothetical protein compare
EX28DRAFT_0092 -1.1 -0.5 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_0843 -1.0 -1.4 nitrate ABC transporter, permease protein compare
EX28DRAFT_1986 -1.0 -0.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_0331 -1.0 -2.2 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_2964 -1.0 -2.6 5,10-methenyltetrahydrofolate synthetase compare
EX28DRAFT_0726 -1.0 -1.7 C-terminal peptidase (prc) compare
EX28DRAFT_2852 -1.0 -3.9 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_2421 -1.0 -1.6 Protein of unknown function (DUF1158) compare
EX28DRAFT_3082 -1.0 -3.0 Uncharacterized conserved protein compare
EX28DRAFT_3883 -1.0 -2.6 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2958 -1.0 -1.2 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_1283 -1.0 -1.2 hypothetical protein compare
EX28DRAFT_1841 -1.0 -1.2 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_4505 -1.0 -3.0 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_4085 -0.9 -4.3 Predicted xylanase/chitin deacetylase compare
EX28DRAFT_2267 -0.9 -4.0 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_0108 -0.9 -0.9 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_2216 -0.9 -4.3 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_1122 -0.9 -4.8 Maltoporin (phage lambda and maltose receptor) compare
EX28DRAFT_2853 -0.9 -3.6 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_0523 -0.9 -0.8 Glycosyltransferase like family 2 compare
EX28DRAFT_0125 -0.9 -0.6 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_2008 -0.9 -3.7 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_0069 -0.9 -1.5 Superfamily II DNA and RNA helicases compare
EX28DRAFT_2723 -0.9 -1.4 SsrA-binding protein compare
EX28DRAFT_3285 -0.9 -2.2 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_2543 -0.9 -4.3 protoheme IX farnesyltransferase compare
EX28DRAFT_2268 -0.8 -4.5 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_4266 -0.8 -1.5 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_0521 -0.8 -3.2 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_4155 -0.8 -2.1 DNA adenine methylase (dam) compare
EX28DRAFT_0214 -0.8 -2.4 cysteine synthase A compare
EX28DRAFT_4296 -0.8 -3.1 putative protein insertion permease FtsX compare
EX28DRAFT_2492 -0.8 -2.1 Protein of unknown function (DUF2496) compare
EX28DRAFT_3626 -0.8 -1.5 RNA compare
EX28DRAFT_2702 -0.8 -2.3 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_2269 -0.8 -4.3 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_0333 -0.8 -4.6 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0857 -0.8 -1.0 tRNA compare
EX28DRAFT_0541 -0.8 -1.0 RNA compare
EX28DRAFT_0901 -0.8 -1.3 hypothetical protein compare
EX28DRAFT_3507 -0.8 -1.0 Response regulator compare
EX28DRAFT_2786 -0.8 -2.6 amidohydrolase, PncC family compare
EX28DRAFT_2541 -0.8 -1.0 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_0181 -0.8 -3.0 Glycine cleavage system regulatory protein compare
EX28DRAFT_0861 -0.8 -2.1 Response regulator receiver domain compare
EX28DRAFT_2967 -0.8 -2.6 transcriptional regulator, ArgP family compare
EX28DRAFT_4094 -0.7 -1.6 Protein of unknown function (DUF3261) compare
EX28DRAFT_0324 -0.7 -1.6 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_3375 -0.7 -0.8 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_1590 -0.7 -1.4 hypothetical protein compare
EX28DRAFT_0706 -0.7 -1.5 Entner-Doudoroff aldolase compare
EX28DRAFT_3418 -0.7 -0.7 Bacterial regulatory helix-turn-helix protein, lysR family compare
EX28DRAFT_2996 -0.7 -1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0948 -0.7 -1.1 hypothetical protein compare
EX28DRAFT_0517 -0.7 -2.9 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
EX28DRAFT_1877 -0.7 -1.9 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
EX28DRAFT_3543 -0.7 -2.8 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
EX28DRAFT_3253 -0.7 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4440 -0.7 -2.7 acetolactate synthase, large subunit (EC 2.2.1.6) compare
EX28DRAFT_3259 -0.7 -4.4 Predicted P-loop-containing kinase compare
EX28DRAFT_0545 -0.7 -2.4 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_1310 -0.7 -1.5 phage replication protein P compare
EX28DRAFT_0322 -0.7 -2.9 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_2948 -0.7 -2.8 Uncharacterized conserved protein compare
EX28DRAFT_2951 -0.7 -1.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4507 -0.7 -1.6 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_1943 -0.7 -1.1 Protein of unknown function (DUF3225) compare
EX28DRAFT_3597 -0.7 -1.3 DNA repair protein RadA compare
EX28DRAFT_0073 -0.7 -0.6 Negative regulator of sigma E activity compare
EX28DRAFT_1882 -0.6 -2.4 Periplasmic glucans biosynthesis protein compare
EX28DRAFT_3410 -0.6 -1.2 hypothetical protein compare
EX28DRAFT_2265 -0.6 -0.4 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0738 -0.6 -1.6 Predicted membrane protein compare
EX28DRAFT_3708 -0.6 -0.8 Transcriptional regulators compare
EX28DRAFT_3900 -0.6 -1.5 SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal compare
EX28DRAFT_2539 -0.6 -3.1 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_4023 -0.6 -4.4 potassium uptake protein compare
EX28DRAFT_3408 -0.6 -1.9 Uncharacterized conserved protein compare
EX28DRAFT_1834 -0.6 -2.7 beta-ketoacyl-acyl-carrier-protein synthase II compare
EX28DRAFT_0107 -0.6 -2.6 RNA methyltransferase, TrmH family, group 1 compare
EX28DRAFT_3864 -0.6 -3.2 Membrane-bound metallopeptidase compare
EX28DRAFT_2213 -0.6 -1.3 dethiobiotin synthase compare
EX28DRAFT_1396 -0.6 -0.7 Amidases related to nicotinamidase compare
EX28DRAFT_3616 -0.6 -0.9 threonine synthase compare
EX28DRAFT_3675 -0.6 -3.0 transcriptional regulator, LacI family compare
EX28DRAFT_1050 -0.6 -0.9 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_3878 -0.6 -2.6 lipopolysaccharide heptosyltransferase III, putative compare
EX28DRAFT_3382 -0.6 -2.7 Protein of unknown function (DUF1471) compare
EX28DRAFT_3426 -0.6 -0.6 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_2126 -0.6 -2.1 transcriptional regulator, DeoR family compare
EX28DRAFT_3461 -0.6 -0.9 ornithine carbamoyltransferase compare
EX28DRAFT_3103 -0.6 -2.6 G/U mismatch-specific uracil-DNA glycosylase (EC 3.2.2.-) compare
EX28DRAFT_1418 -0.6 -2.0 phenylacetate-CoA oxygenase, PaaI subunit compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in no stress control experiments