Experiment set1IT030 for Escherichia coli BL21

Compare to:

NophageControl

200 most important genes:

  gene name fitness t score description  
ECD_03685 -5.1 -6.0 diaminopimelate epimerase compare
ECD_01664 -3.1 -1.9 putative acyl-CoA dehydrogenase compare
ECD_02111 -3.0 -3.7 uncharacterized protein compare
ECD_01551 -2.9 -1.8 UPF0060 family inner membrane protein compare
ECD_00930 -2.7 -2.7 M15A protease-related family periplasmic protein compare
ECD_04038 -2.7 -2.6 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_03590 -2.4 -3.6 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_03897 -2.2 -6.9 glucosephosphate isomerase compare
ECD_t00059 -2.1 -2.0 tRNA-Thr compare
ECD_03067 -2.0 -2.1 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_02726 -2.0 -5.9 site-specific tyrosine recombinase compare
ECD_02508 -2.0 -2.7 tmRNA-binding trans-translation protein compare
ECD_02507 -2.0 -2.3 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_03687 -2.0 -2.0 site-specific tyrosine recombinase compare
ECD_02738 -1.9 -2.6 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_03075 -1.9 -7.5 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_02238 -1.9 -2.3 colicin V production protein compare
ECD_01586 -1.8 -1.5 beta-D-glucuronidase compare
ECD_01162 -1.8 -1.6 fatty acid metabolism regulon transcriptional regulator compare
ECD_00450 -1.8 -1.4 conserved protein, rhs-like protein compare
ECD_03625 -1.7 -5.8 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_02549 -1.7 -7.0 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_02286 -1.7 -1.6 putative lipoprotein involved in colanic acid biosynthesis compare
ECD_02399 -1.7 -3.3 GMP synthetase (glutamine aminotransferase) compare
ECD_04107 -1.6 -3.1 trehalose-6-P hydrolase compare
ECD_02607 -1.6 -1.2 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_01167 -1.6 -1.9 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_02463 -1.4 -3.6 back-translocating elongation factor EF4, GTPase compare
ECD_02404 -1.4 -1.8 BamABCDE complex OM biogenesis lipoprotein compare
ECD_01910 -1.3 -1.7 UPF0265 family protein compare
ECD_01814 -1.3 -1.7 C-N hydrolase family protein compare
ECD_01472 -1.3 -2.0 autoinducer 2 import system permease protein compare
ECD_02069 -1.2 -2.0 tRNA-dihydrouridine synthase C compare
ECD_02459 -1.2 -2.4 gap repair protein compare
ECD_02331 -1.2 -2.7 porphyrinogen oxidase, cytoplasmic compare
ECD_03037 -1.2 -2.5 ribosome maturation factor for 30S subunits compare
ECD_01434 -1.2 -1.3 formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible compare
ECD_02765 -1.2 -3.9 transketolase 1, thiamine triphosphate-binding compare
ECD_02305 -1.2 -1.3 DUF1323 family putative DNA-binding protein compare
ECD_00889 -1.2 -1.7 leucyl/phenylalanyl-tRNA-protein transferase compare
ECD_03238 -1.2 -1.7 D-ribulose-5-phosphate 3-epimerase compare
ECD_00941 -1.2 -2.1 NAD(P)H-dependent FMN reductase compare
ECD_02285 -1.2 -1.5 uncharacterized protein compare
ECD_00582 -1.1 -2.6 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase compare
ECD_00230 -1.1 -1.8 hypothetical protein compare
ECD_01250 -1.0 -1.1 DNA topoisomerase I, omega subunit compare
ECD_01201 -1.0 -2.5 nitrate/nitrite transporter compare
ECD_01012 -1.0 -2.1 putative reactive intermediate detoxifying aminoacrylate hydrolase compare
ECD_01388 -1.0 -1.7 lipoprotein compare
ECD_02470 -1.0 -2.6 ATP-dependent RNA helicase compare
ECD_01138 -1.0 -2.5 anti-repressor for YcgE, blue light-responsive; FAD-binding; inactive c-di-GMP phosphodiesterase-like EAL domain protein compare
ECD_03731 -1.0 -3.2 TatABCE protein translocation system subunit compare
ECD_03801 -1.0 -5.4 6-phosphofructokinase I compare
ECD_02284 -1.0 -1.2 formyl-CoA transferase, NAD(P)-binding compare
ECD_02042 -0.9 -1.2 DUF2574 family protein compare
ECD_01084 -0.9 -3.3 DUF177 family protein compare
ECD_00682 -0.9 -2.4 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_01305 -0.9 -2.4 S9-like protein non-peptidase family protein compare
ECD_t00077 -0.9 -1.0 tRNA-Thr compare
ECD_02380 -0.9 -2.7 hydrogenase 4, Fe-S subunit compare
ECD_02777 -0.9 -3.8 glutathione synthetase compare
ECD_01879 -0.9 -0.9 response regulator in two-component regulatory system with BarA compare
ECD_00873 -0.9 -2.8 putative NAD(P)H-dependent oxidoreductase compare
ECD_02256 -0.9 -2.4 putative DNA endonuclease compare
ECD_02206 -0.9 -1.7 NADH:ubiquinone oxidoreductase, chain I compare
ECD_02280 -0.9 -1.2 hybrid sensory histidine kinase in two-component regulatory system with EvgA compare
ECD_01427 -0.9 -1.2 nitrate/nitrite transporter compare
ECD_00977 -0.9 -3.0 hydrogenase 1, b-type cytochrome subunit compare
ECD_02130 -0.9 -1.3 nitrate reductase, small, cytochrome C550 subunit, periplasmic compare
ECD_00020 -0.9 -1.9 hypothetical protein compare
ECD_03818 -0.9 -1.9 essential cell division protein compare
ECD_02192 -0.9 -2.2 isochorismate synthase 2 compare
ECD_01886 -0.9 -2.1 membrane-anchored, periplasmic TMAO, DMSO reductase compare
ECD_01774 -0.9 -1.4 ribonuclease D compare
ECD_03506 -0.9 -1.8 RNA polymerase, omega subunit compare
ECD_02147 -0.9 -2.4 fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein compare
ECD_03657 -0.9 -4.5 guanosine pentaphosphatase/exopolyphosphatase compare
ECD_03119 -0.9 -0.9 global DNA-binding transcriptional dual regulator compare
ECD_00366 -0.9 -2.0 phosphatidylglycerophosphatase A compare
ECD_00752 -0.8 -1.4 molybdopterin synthase, large subunit compare
ECD_01859 -0.8 -2.5 fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein compare
ECD_00354 -0.8 -3.7 tRNA-guanine transglycosylase compare
ECD_01486 -0.8 -1.3 UPF0056 family inner membrane protein compare
ECD_01209 -0.8 -2.6 UPF0225 family protein compare
ECD_00933 -0.8 -2.4 outer membrane porin 1a (Ia compare
ECD_03488 -0.8 -2.4 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_02529 -0.8 -1.9 hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein compare
ECD_03847 -0.8 -4.5 pyridine nucleotide transhydrogenase, soluble compare
ECD_04086 -0.8 -2.2 3'(2'),5'-bisphosphate nucleotidase compare
ECD_03036 -0.8 -1.9 transcription termination/antitermination L factor compare
ECD_04030 -0.8 -0.9 phosphatidylserine decarboxylase compare
ECD_03509 -0.8 -3.1 ATP-dependent DNA helicase compare
ECD_01826 -0.8 -1.5 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_02297 -0.8 -0.7 putative enzyme IIB component of PTS compare
ECD_02203 -0.8 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_04070 -0.8 -1.5 50S ribosomal subunit protein L9 compare
ECD_00209 -0.8 -1.3 lipoprotein compare
ECD_00246 -0.8 -2.4 DUF1440 family inner membrane acid resistance protein compare
ECD_00053 -0.8 -2.6 diadenosine tetraphosphatase compare
ECD_01841 -0.8 -1.6 carboxy-SAM synthase compare
ECD_03097 -0.8 -3.4 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_01080 -0.8 -2.0 endoribonuclease; RNA-binding protein compare
ECD_03277 -0.8 -3.4 sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding compare
ECD_02321 -0.8 -1.7 cysteine synthase B (O-acetylserine sulfhydrolase B) compare
ECD_01482 -0.7 -0.9 succinate semialdehyde dehydrogenase, NAD(P)+-dependent compare
ECD_04041 -0.7 -1.5 modulator for HflB protease specific for phage lambda cII repressor compare
ECD_04051 -0.7 -1.4 UPF0719 family inner membrane protein compare
ECD_02729 -0.7 -2.2 flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair compare
ECD_01953 -0.7 -1.4 colanic biosynthesis UDP-glucose lipid carrier transferase compare
ECD_03256 -0.7 -3.7 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_01535 -0.7 -1.1 hypothetical protein compare
ECD_00018 -0.7 -1.5 sodium-proton antiporter compare
ECD_02820 -0.7 -0.7 hypothetical protein compare
ECD_01401 -0.7 -1.3 gamma-aminobutyraldehyde dehydrogenase compare
ECD_00774 -0.7 -1.2 23S rRNA m(6)A1618 methyltransferase, SAM-dependent compare
ECD_03020 -0.7 -1.8 stress-resistance protein compare
ECD_01835 -0.7 -1.0 UPF0082 family protein compare
ECD_01755 -0.7 -1.3 putative diguanylate cyclase compare
ECD_00681 -0.7 -0.8 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_01727 -0.7 -1.6 CDP-alcohol phosphatidyltransferase family inner membrane protein compare
ECD_02209 -0.7 -2.9 NADH:ubiquinone oxidoreductase, chain F compare
ECD_02732 -0.7 -1.2 UPF0267 family protein compare
ECD_01976 -0.7 -2.5 protein kinase-related putative non-specific DNA-binding protein compare
ECD_02346 -0.7 -1.9 aldehyde oxidoreductase, ethanolamine utilization protein compare
ECD_01974 -0.7 -1.5 3-methyl-adenine DNA glycosylase II compare
ECD_02652 -0.7 -2.0 hypothetical protein compare
ECD_00098 -0.7 -1.0 regulator of secA translation compare
ECD_03610 -0.7 -2.4 phosphate ABC transporter permease compare
ECD_03031 -0.7 -3.5 polynucleotide phosphorylase/polyadenylase compare
ECD_03405 -0.7 -1.9 HTH_CROC1 family putative transcriptional regulator compare
ECD_02204 -0.7 -1.0 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_01843 -0.7 -2.5 trimethylamine N-oxide reductase system III, catalytic subunit compare
ECD_01582 -0.7 -0.9 mannose-6-phosphate isomerase compare
ECD_00896 -0.7 -2.2 recombination intermediate processing DNA-dependent ATPase compare
ECD_01906 -0.7 -1.0 hypothetical protein compare
ECD_01732 -0.7 -2.4 DNA topoisomerase III compare
ECD_02984 -0.7 -1.5 L-threonine dehydratase, catabolic compare
ECD_01894 -0.7 -1.4 AMP nucleosidase compare
ECD_00335 -0.7 -1.7 shikimate kinase II compare
ECD_00296 -0.7 -1.5 thiogalactoside acetyltransferase compare
ECD_03813 -0.7 -1.3 FtsZ stabilizer, septal ring assembly factor, cell division stimulator compare
ECD_04260 -0.7 -3.3 purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase compare
ECD_00242 -0.7 -1.1 moco insertion factor for PaoABC aldehyde oxidoreductase compare
ECD_03653 -0.7 -1.7 peptidyl-prolyl cis-trans isomerase C (rotamase C) compare
ECD_02309 -0.6 -2.0 putative inorganic ion transporter compare
ECD_04018 -0.6 -0.9 entericidin A membrane lipoprotein, antidote entericidin B compare
ECD_01857 -0.6 -0.8 methyl-accepting chemotaxis protein II compare
ECD_00081 -0.6 -2.7 transcriptional repressor-activator for carbon metabolism compare
ECD_00687 -0.6 -1.5 succinyl-CoA synthetase, beta subunit compare
ECD_02397 -0.6 -1.5 outer membrane integrity lipoprotein compare
ECD_01556 -0.6 -0.9 putative selenate reductase, periplasmic compare
ECD_03935 -0.6 -2.6 redox-sensitive transcriptional activator of soxS; autorepressor compare
ECD_01404 -0.6 -1.3 DUF606 family inner membrane protein compare
ECD_01045 -0.6 -1.3 OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase compare
ECD_03794 -0.6 -2.5 superoxide dismutase, Mn compare
ECD_00660 -0.6 -1.7 conserved protein, rhs-like protein compare
ECD_00506 -0.6 -1.4 DLP12 prophage; putative phage lysis protein compare
ECD_01985 -0.6 -0.8 UPF0339 family protein compare
ECD_00813 -0.6 -0.7 transcriptional regulator of csgD and ybiJI; autoregulator compare
ECD_01101 -0.6 -1.6 OM lipoprotein stimulator of MrcB transpeptidase compare
ECD_01805 -0.6 -2.6 MCE domain protein compare
ECD_03816 -0.6 -1.8 molecular chaperone and ATPase component of HslUV protease compare
ECD_01878 -0.6 -1.7 excinuclease UvrABC, endonuclease subunit compare
ECD_01604 -0.6 -1.8 dipeptide and tripeptide permease A compare
ECD_02400 -0.6 -2.1 IMP dehydrogenase compare
ECD_00412 -0.6 -2.2 Hha toxicity attenuator; conjugation-related protein compare
ECD_01921 -0.6 -1.5 ATP phosphoribosyltransferase compare
ECD_04042 -0.6 -1.9 HflB protease modulator specific for phage lambda cII repressor compare
ECD_03711 -0.6 -2.6 hypothetical protein compare
ECD_03096 -0.6 -1.4 malate dehydrogenase, NAD(P)-binding compare
ECD_00455 -0.6 -1.1 ureidoglycolate lyase, releasing urea compare
ECD_00134 -0.6 -1.8 putative fimbrial-like adhesin protein compare
ECD_03583 -0.6 -4.1 gap repair protein compare
ECD_02058 -0.6 -1.2 putative ABC transporter permease compare
ECD_02202 -0.6 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_00859 -0.6 -1.4 putrescine ABC transporter periplasmic binding protein compare
ECD_03303 -0.6 -2.8 branched-chain amino acid ABC transporter ATPase compare
ECD_00136 -0.6 -1.1 putative fimbrial-like adhesin protein compare
ECD_00960 -0.6 -1.0 Ter macrodomain organizer matS-binding protein compare
ECD_03735 -0.6 -2.9 NAD(P)H-flavin reductase compare
ECD_02201 -0.6 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_02694 -0.6 -0.6 putative LuxR family transcriptional regulator compare
ECD_02211 -0.6 -2.2 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_00026 -0.6 -1.9 hypothetical protein compare
ECD_03349 -0.6 -3.0 glutathione oxidoreductase compare
ECD_00034 -0.6 -2.8 ribonucleoside hydrolase 3 compare
ECD_01220 -0.6 -2.3 oligopeptide ABC transporter ATPase compare
ECD_02173 -0.6 -1.3 L-rhamnonate dehydratase compare
ECD_02034 -0.6 -1.0 hypothetical protein compare
ECD_01956 -0.6 -1.4 putative glycosyl transferase compare
ECD_01773 -0.6 -0.9 putative YeaWX dioxygenase beta subunit, reductase component compare
ECD_02169 -0.6 -2.2 anaerobic sn-glycerol-3-phosphate dehydrogenase, C subunit, 4Fe-4S iron-sulfur cluster compare
ECD_01629 -0.6 -1.1 transcriptional repressor, hypoxanthine-binding compare
ECD_00015 -0.6 -1.9 chaperone Hsp40, DnaK co-chaperone compare
ECD_02785 -0.5 -2.7 HemN family putative oxidoreductase compare
ECD_04185 -0.5 -0.9 periplasmic chaperone compare
ECD_04269 -0.5 -1.5 transcriptional repressor, tryptophan-binding compare
ECD_02100 -0.5 -1.5 UPF0153 cysteine cluster protein compare
ECD_00014 -0.5 -1.0 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_01287 -0.5 -1.5 putative ABC sugar transporter periplasmic binding protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in lb_plus_sm_buffer experiments