Experiment set1IT029 for Pseudomonas sp. S08-1

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
OH686_15135 -5.8 -5.6 Anthranilate phosphoribosyltransferase compare
OH686_14595 -5.6 -5.4 Imidazole glycerol phosphate synthase cyclase subunit compare
OH686_08125 -5.3 -12.4 acetolactate synthase, small subunit compare
OH686_10020 -5.3 -3.7 Shikimate kinase I compare
OH686_02490 -5.3 -14.6 phosphogluconate dehydratase compare
OH686_12425 -5.3 -12.2 tryptophan synthase, beta subunit compare
OH686_13885 -5.2 -12.1 argininosuccinate lyase compare
OH686_14590 -5.1 -13.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
OH686_04475 -5.1 -7.8 3-isopropylmalate dehydratase small subunit compare
OH686_15125 -5.0 -21.1 anthranilate synthase component I compare
OH686_02435 -4.9 -18.5 glucose-6-phosphate dehydrogenase compare
OH686_02480 -4.9 -6.6 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
OH686_14580 -4.8 -15.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
OH686_04470 -4.8 -17.6 3-isopropylmalate dehydrogenase compare
OH686_15195 -4.8 -9.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
OH686_08470 -4.8 -17.4 Histidinol dehydrogenase compare
OH686_04445 -4.8 -15.1 Phosphoribosylanthranilate isomerase compare
OH686_02455 -4.8 -12.7 Glucose ABC transporter, ATP-binding subunit compare
OH686_11005 -4.8 -14.0 methionine biosynthesis protein MetW compare
OH686_12430 -4.7 -14.6 tryptophan synthase, alpha subunit compare
OH686_08475 -4.7 -17.4 ATP phosphoribosyltransferase compare
OH686_10005 -4.7 -29.2 Glutamate synthase [NADPH] large chain compare
OH686_03930 -4.7 -13.5 argininosuccinate synthase compare
OH686_02460 -4.7 -13.7 Glucose ABC transport system, inner membrane component 2 compare
OH686_02465 -4.6 -16.8 Glucose ABC transport system, inner membrane component 1 compare
OH686_09445 -4.6 -14.2 ATP phosphoribosyltransferase, regulatory subunit compare
OH686_13600 -4.6 -15.6 N-acetylglutamate kinase compare
OH686_10000 -4.6 -19.7 Glutamate synthase [NADPH] small chain compare
OH686_14100 -4.6 -19.1 dihydroxy-acid dehydratase compare
OH686_15140 -4.6 -20.7 Indole-3-glycerol phosphate synthase compare
OH686_08130 -4.6 -19.6 acetolactate synthase, large subunit, biosynthetic type compare
OH686_04415 -4.6 -14.0 O-succinylhomoserine sulfhydrylase compare
OH686_02475 -4.5 -12.1 Integral membrane sensor signal transduction histidine kinase , glucose catabolism cluster compare
OH686_11000 -4.5 -18.2 homoserine O-acetyltransferase compare
OH686_00475 -4.4 -15.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
OH686_11120 -4.4 -12.8 amino-acid N-acetyltransferase compare
OH686_02485 -4.3 -12.1 glucokinase compare
OH686_04480 -4.3 -12.7 3-isopropylmalate dehydratase large subunit compare
OH686_10160 -4.3 -9.6 Phosphoribosyl-AMP cyclohydrolase compare
OH686_10165 -4.2 -6.4 Phosphoribosyl-ATP pyrophosphatase compare
OH686_08465 -4.1 -19.7 histidinol-phosphate transaminase compare
OH686_10820 -4.1 -16.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
OH686_00660 -4.1 -9.1 Isochorismatase compare
OH686_02425 -4.1 -12.0 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase compare
OH686_11400 -4.0 -17.4 threonine ammonia-lyase, biosynthetic compare
OH686_12485 -4.0 -4.7 Shikimate 5-dehydrogenase I alpha compare
OH686_17260 -3.7 -6.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
OH686_04115 -3.7 -2.5 hypothetical protein compare
OH686_16305 -3.7 -8.2 Glutamate 5-kinase / RNA-binding C-terminal domain PUA compare
OH686_02470 -3.7 -12.3 ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron) compare
OH686_13590 -3.6 -3.5 Orotate phosphoribosyltransferase compare
OH686_14575 -3.6 -7.5 Imidazoleglycerol-phosphate dehydratase compare
OH686_03470 -3.6 -16.0 Sulfite reductase [NADPH] hemoprotein beta-component compare
OH686_08115 -3.6 -12.2 ketol-acid reductoisomerase compare
OH686_02415 -3.6 -16.1 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
OH686_13545 -3.5 -14.2 RidA/YER057c/UK114 superfamily protein compare
OH686_02430 -3.5 -2.8 6-phosphogluconolactonase , eukaryotic type compare
OH686_09340 -3.5 -8.1 Gamma-glutamyl phosphate reductase compare
OH686_11420 -3.4 -12.9 Phosphoserine phosphatase compare
OH686_13455 -3.3 -11.4 Phosphate regulon metal ion transporter containing CBS domains compare
OH686_00285 -3.3 -15.0 Precorrin-2 oxidase or Sirohydrochlorin ferrochelatase activity of CysG / Uroporphyrinogen-III methyltransferase compare
OH686_13800 -3.3 -2.3 diaminopimelate decarboxylase compare
OH686_20870 -3.3 -5.1 Chorismate mutase I / Prephenate dehydratase compare
OH686_03475 -3.2 -5.4 Oxidoreductase putative compare
OH686_11285 -3.2 -18.7 D-2-hydroxyglutarate dehydrogenase compare
OH686_09505 -3.1 -2.2 3'-to-5' oligoribonuclease (orn) compare
OH686_17100 -3.1 -2.1 Cell division-associated, ATP-dependent zinc metalloprotease FtsH compare
OH686_21330 -3.0 -4.0 aspartate kinase, monofunctional class compare
OH686_07585 -3.0 -6.9 3-dehydroquinate dehydratase, type II compare
OH686_00120 -3.0 -2.9 NADH-ubiquinone oxidoreductase chain I compare
OH686_17405 -3.0 -3.5 Predicted transmembrane protein compare
OH686_08560 -3.0 -10.4 RNase adapter protein RapZ compare
OH686_09710 -2.9 -2.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OH686_10980 -2.9 -4.3 pyrroline-5-carboxylate reductase compare
OH686_21370 -2.8 -4.9 tRNA-Arg compare
OH686_17765 -2.8 -1.9 threonine synthase compare
OH686_17570 -2.8 -12.3 2-isopropylmalate synthase compare
OH686_00145 -2.8 -6.8 NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D compare
OH686_00140 -2.7 -4.1 NADH-ubiquinone oxidoreductase chain E compare
OH686_20435 -2.7 -1.9 monothiol glutaredoxin, Grx4 family compare
OH686_01680 -2.7 -2.6 2-methylisocitrate dehydratase, Fe/S-dependent compare
OH686_02735 -2.7 -6.9 Flagellar synthesis regulator FleN compare
OH686_20895 -2.7 -3.5 integration host factor, beta subunit compare
OH686_09555 -2.7 -13.9 phosphoserine phosphatase SerB compare
OH686_00095 -2.6 -6.9 NADH-ubiquinone oxidoreductase chain N compare
OH686_00100 -2.6 -5.2 NADH-ubiquinone oxidoreductase chain M compare
OH686_22870 -2.6 -3.0 integration host factor, alpha subunit compare
OH686_12075 -2.6 -1.8 Exodeoxyribonuclease V beta chain compare
OH686_00105 -2.6 -5.7 NADH-ubiquinone oxidoreductase chain L compare
OH686_00130 -2.5 -5.8 NADH dehydrogenase (quinone), G subunit compare
OH686_11275 -2.5 -8.0 Exopolyphosphatase compare
OH686_18180 -2.5 -2.4 Murein hydrolase activator NlpD compare
OH686_00135 -2.5 -4.9 NADH oxidoreductase (quinone), F subunit compare
OH686_07905 -2.5 -2.4 protein-(glutamine-N5) methyltransferase, release factor-specific compare
OH686_20910 -2.4 -2.3 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
OH686_08505 -2.4 -2.3 Phospholipid ABC transporter permease protein MlaE compare
OH686_21295 -2.4 -5.6 arginine/ornithine succinyltransferase, alpha subunit compare
OH686_00150 -2.4 -5.7 NADH-ubiquinone oxidoreductase chain B compare
OH686_09475 -2.4 -4.6 tRNA dimethylallyltransferase compare
OH686_20405 -2.4 -9.0 ornithine carbamoyltransferase compare
OH686_08495 -2.4 -2.8 Phospholipid ABC transporter shuttle protein MlaC compare
OH686_07640 -2.3 -2.3 probable sensor/response regulator hybrid compare
OH686_14435 -2.3 -16.2 Glycosyl transferase, group 1 family protein compare
OH686_14385 -2.3 -16.1 UDP-N-acetylglucosamine 2-epimerase compare
OH686_00115 -2.3 -2.6 NADH-ubiquinone oxidoreductase chain J compare
OH686_14420 -2.2 -8.5 hypothetical protein compare
OH686_08510 -2.2 -2.6 Phospholipid ABC transporter ATP-binding protein MlaF compare
OH686_14425 -2.2 -14.9 glycosyl transferase, group 1 family protein compare
OH686_14285 -2.2 -13.7 Thiazole synthase compare
OH686_01780 -2.2 -8.6 L,D-transpeptidase compare
OH686_14280 -2.2 -9.6 thiamine biosynthesis protein ThiS compare
OH686_14390 -2.2 -14.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
OH686_09625 -2.2 -9.2 hypothetical protein compare
OH686_08500 -2.2 -2.5 outer membrane lipid asymmetry maintenance protein MlaD compare
OH686_09190 -2.1 -11.3 Thiamin-phosphate pyrophosphorylase compare
OH686_00155 -2.1 -4.5 NADH ubiquinone oxidoreductase chain A compare
OH686_11110 -2.1 -5.2 glutamate--cysteine ligase compare
OH686_12130 -2.1 -2.7 UPF0391 membrane protein YtjA compare
OH686_17760 -2.0 -2.7 Homoserine dehydrogenase compare
OH686_11205 -2.0 -14.5 Xaa-Pro aminopeptidase compare
OH686_16520 -2.0 -12.0 nicotinate-nucleotide diphosphorylase (carboxylating) compare
OH686_22720 -2.0 -2.6 Outer-membrane-phospholipid-binding lipoprotein MlaA compare
OH686_02205 -2.0 -2.2 cytochrome c oxidase, cbb3-type, subunit III compare
OH686_18175 -1.9 -6.2 protein-L-isoaspartate O-methyltransferase compare
OH686_00235 -1.9 -11.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
OH686_12250 -1.9 -6.3 Zinc ABC transporter, permease protein ZnuB compare
OH686_20060 -1.9 -2.5 HtrA protease/chaperone protein compare
OH686_21970 -1.9 -4.7 L,D-transpeptidase compare
OH686_12195 -1.9 -4.0 Periplasmic thiol:disulfide interchange protein DsbA compare
OH686_00125 -1.9 -3.0 NADH-ubiquinone oxidoreductase chain H compare
OH686_08365 -1.9 -5.3 Uncharacterized protein YraP compare
OH686_04045 -1.8 -2.3 hypothetical protein compare
OH686_11700 -1.8 -8.7 Glutaryl-CoA dehydrogenase compare
OH686_21305 -1.8 -2.3 succinylglutamate-semialdehyde dehydrogenase compare
OH686_13410 -1.8 -12.7 Phosphate ABC transporter, substrate-binding protein PstS compare
OH686_13415 -1.8 -11.5 Phosphate ABC transporter, permease protein PstC compare
OH686_17265 -1.8 -9.5 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
OH686_19190 -1.7 -10.5 quinolinate synthetase complex, A subunit compare
OH686_02195 -1.7 -2.3 cytochrome c oxidase, cbb3-type, subunit II compare
OH686_11225 -1.7 -9.2 5-formyltetrahydrofolate cyclo-ligase compare
OH686_18990 -1.7 -2.2 phosphoribosylglycinamide formyltransferase compare
OH686_04280 -1.7 -1.9 hypothetical protein compare
OH686_13550 -1.7 -2.5 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase / GTP pyrophosphokinase , (p)ppGpp synthetase II compare
OH686_13425 -1.7 -8.9 phosphate ABC transporter, ATP-binding protein compare
OH686_22005 -1.7 -9.7 Soluble pyridine nucleotide transhydrogenase compare
OH686_03640 -1.7 -2.4 ATP-dependent Clp protease, ATP-binding subunit ClpX compare
OH686_12955 -1.6 -1.8 hypothetical protein compare
OH686_01030 -1.6 -2.6 ABC-type siderophore export system, fused ATPase and permease components compare
OH686_01795 -1.6 -2.0 ABC-type antimicrobial peptide transport system, ATPase component compare
OH686_09185 -1.6 -7.3 Hydroxymethylpyrimidine phosphate kinase ThiD compare
OH686_02190 -1.5 -3.9 cytochrome c oxidase, cbb3-type, subunit I compare
OH686_14375 -1.5 -2.6 glucose-1-phosphate thymidylyltransferase compare
OH686_04405 -1.5 -1.4 hypothetical protein compare
OH686_17505 -1.5 -4.5 FeS assembly protein IscX compare
OH686_07900 -1.5 -6.9 Molybdopterin-synthase adenylyltransferase compare
OH686_11280 -1.5 -4.2 D-3-phosphoglycerate dehydrogenase compare
OH686_02995 -1.5 -2.3 flagellar biosynthesis anti-sigma factor FlgM compare
OH686_13555 -1.5 -3.8 DNA-directed RNA polymerase, omega subunit compare
OH686_10235 -1.5 -2.1 hypothetical protein compare
OH686_18800 -1.5 -8.1 pyruvate kinase compare
OH686_11705 -1.4 -9.0 Uncharacterized protein compare
OH686_02620 -1.4 -5.5 Cytochrome c heme lyase subunit CcmH compare
OH686_22050 -1.4 -2.6 MotA/TolQ/ExbB proton channel family protein compare
OH686_15065 -1.4 -8.6 Nucleotidyl transferase putative compare
OH686_21965 -1.4 -2.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
OH686_13460 -1.4 -7.5 phosphate regulon sensor kinase PhoR compare
OH686_01635 -1.4 -4.2 CmpX compare
OH686_19125 -1.4 -4.7 crossover junction endodeoxyribonuclease RuvC compare
OH686_19775 -1.3 -3.2 septum site-determining protein MinC compare
OH686_10915 -1.3 -7.6 glutathione synthase compare
OH686_08155 -1.3 -6.3 hypothetical protein compare
OH686_03635 -1.3 -7.2 endopeptidase La compare
OH686_05545 -1.3 -1.7 hypothetical protein compare
OH686_07965 -1.3 -4.4 GTP-binding and nucleic acid-binding protein YchF compare
OH686_23190 -1.3 -1.3 hypothetical protein compare
OH686_02215 -1.2 -2.4 Putative analog of CcoH, COG3198 compare
OH686_17715 -1.2 -3.2 Inner membrane protein YpjD compare
OH686_09620 -1.2 -6.1 Serine acetyltransferase compare
OH686_12545 -1.2 -2.3 Lipid A biosynthesis lauroyl acyltransferase compare
OH686_13200 -1.2 -9.3 acetyl-CoA carboxylase, biotin carboxylase subunit compare
OH686_19770 -1.2 -3.5 septum site-determining protein MinD compare
OH686_00695 -1.1 -3.4 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
OH686_21960 -1.1 -3.6 repressor LexA compare
OH686_13420 -1.1 -8.2 phosphate ABC transporter, permease protein PstA compare
OH686_13205 -1.1 -9.5 oxaloacetate decarboxylase alpha subunit compare
OH686_20840 -1.1 -7.9 phosphoglycolate phosphatase, bacterial compare
OH686_02725 -1.1 -4.0 Chemotaxis regulator - transmits chemoreceptor signals to flagellar motor components CheY compare
OH686_16240 -1.1 -7.5 Energy-dependent translational throttle protein EttA compare
OH686_13430 -1.1 -3.9 phosphate transport system regulatory protein PhoU compare
OH686_18020 -1.1 -7.7 hypothetical protein compare
OH686_19765 -1.1 -2.3 cell division topological specificity factor MinE compare
OH686_19135 -1.1 -4.9 Holliday junction DNA helicase RuvB compare
OH686_09145 -1.1 -3.3 CDS compare
OH686_12080 -1.1 -3.3 exodeoxyribonuclease V, gamma subunit compare
OH686_08565 -1.1 -1.1 Phosphocarrier protein, nitrogen regulation associated compare
OH686_07980 -1.0 -1.2 hypothetical protein' product='hypothetical protein compare
OH686_13700 -1.0 -4.3 Putrescine utilization regulator compare
OH686_21310 -1.0 -4.1 succinylarginine dihydrolase compare
OH686_10575 -1.0 -7.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
OH686_14410 -1.0 -5.8 Glycosyl transferase, group 1 compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. S08-1 in carbon source experiments

For carbon source D-Glucose across organisms