Experiment set1IT029 for Pseudomonas sp. S08-1

Compare to:

D-Glucose carbon source

200 most detrimental genes:

  gene name fitness t score description  
OH686_13585 +2.1 18.3 Exodeoxyribonuclease III compare
OH686_02440 +1.2 10.0 Phosphogluconate repressor HexR, RpiR family compare
OH686_00335 +1.1 10.0 BarA-associated response regulator UvrY ( GacA SirA) compare
OH686_21350 +0.8 2.0 tRNA-Arg compare
OH686_13995 +0.8 7.4 polyphosphate kinase 1 compare
OH686_09740 +0.8 1.5 hypothetical protein compare
OH686_00580 +0.7 1.6 Orotidine 5'-phosphate decarboxylase compare
OH686_22875 +0.7 3.5 Transcriptional regulator, MerR family compare
OH686_13750 +0.7 1.4 hypothetical protein compare
OH686_21245 +0.7 3.4 CDS compare
OH686_10600 +0.7 2.3 Ser-tRNA(Ala) deacylase or Gly-tRNA(Ala) deacylase compare
OH686_02840 +0.7 1.3 flagellar hook-basal body complex protein FliE compare
OH686_07845 +0.7 6.1 Transcriptional regulator, MerR family, associated with photolyase compare
OH686_06620 +0.6 2.6 hypothetical protein compare
OH686_04520 +0.6 3.1 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase compare
OH686_04605 +0.6 5.4 Branched-chain amino acid ABC transporter, substrate-binding protein LivJ compare
OH686_21345 +0.6 1.0 tRNA-Arg compare
OH686_21265 +0.6 5.5 Arginine/ornithine ABC transporter, permease protein AotM compare
OH686_04625 +0.6 4.6 Branched-chain amino acid ABC transporter, ATP-binding protein LivF compare
OH686_04620 +0.6 5.6 Branched-chain amino acid ABC transporter, ATP-binding protein LivG compare
OH686_21255 +0.6 4.9 Arginine/ornithine ABC transporter, substrate-binding protein AotJ compare
OH686_04610 +0.6 5.3 Branched-chain amino acid ABC transporter, permease protein LivH compare
OH686_03000 +0.6 0.9 Flagellar biosynthesis protein FlgN compare
OH686_12145 +0.6 5.6 Alginate biosynthesis two-component system response regulator AlgB compare
OH686_21275 +0.6 4.6 Arginine/ornithine ABC transporter, ATP-binding protein AotP compare
OH686_17880 +0.6 1.0 hypothetical protein compare
OH686_23175 +0.6 2.9 Two-component transcriptional response regulator, OmpR family compare
OH686_01445 +0.6 2.6 hypothetical protein compare
OH686_16665 +0.6 2.4 Nickel-binding accessory protein UreJ-HupE compare
OH686_21270 +0.6 3.7 Succinylglutamate desuccinylase/aspartoacylase compare
OH686_17820 +0.6 1.6 Amino acid ABC transporter, ATP-binding protein YhdZ compare
OH686_04340 +0.6 1.2 tRNA-Asp compare
OH686_04615 +0.6 4.8 Branched-chain amino acid ABC transporter, permease protein LivM compare
OH686_23770 +0.5 2.3 hypothetical protein compare
OH686_17435 +0.5 1.7 preprotein translocase, YajC subunit compare
OH686_08575 +0.5 2.6 UPF0307 protein YjgA compare
OH686_22725 +0.5 1.3 hypothetical protein compare
OH686_06580 +0.5 2.9 Cold shock protein of CSP family compare
OH686_02785 +0.5 4.0 flagellar motor switch protein FliM compare
OH686_16030 +0.5 1.4 CopG protein compare
OH686_05630 +0.5 2.4 hypothetical protein compare
OH686_14835 +0.5 1.4 CDS compare
OH686_15655 +0.5 1.7 ABC-type antimicrobial peptide transport system, ATPase component compare
OH686_05080 +0.5 1.0 ChlD component of cobalt chelatase compare
OH686_09650 +0.5 3.5 Carbamoyltransferase in large core OS assembly cluster compare
OH686_16975 +0.5 1.2 CDS compare
OH686_16075 +0.4 1.0 hypothetical protein compare
OH686_13105 +0.4 2.8 Delta 1-pyrroline-2-carboxylate reductase (NAD(P)H) compare
OH686_04055 +0.4 3.8 hypothetical protein compare
OH686_02835 +0.4 3.6 flagellar M-ring protein FliF compare
OH686_02680 +0.4 2.4 hypothetical protein compare
OH686_00865 +0.4 1.2 3-hydroxyacyl-CoA dehydrogenase or 17hydroxysteroid dehydrogenase type 10 (HSD10)-like compare
OH686_22635 +0.4 0.8 tRNA-Gly compare
OH686_21700 +0.4 1.5 hypothetical protein compare
OH686_18865 +0.4 2.0 hypothetical protein' product='hypothetical protein compare
OH686_22015 +0.4 1.9 hypothetical protein compare
OH686_12540 +0.4 1.7 hypothetical protein compare
OH686_21260 +0.4 3.3 Arginine/ornithine ABC transporter, permease protein AotQ compare
OH686_10900 +0.4 2.3 type IV pili signal transduction protein PilI compare
OH686_05675 +0.4 1.4 hypothetical protein compare
OH686_02940 +0.4 2.1 Flagellar P-ring protein FlgI compare
OH686_02830 +0.4 2.8 flagellar motor switch protein FliG compare
OH686_15145 +0.4 2.8 Cyclic AMP receptor protein compare
OH686_04995 +0.4 1.7 DUF326 protein bsYhjQ compare
OH686_16510 +0.4 3.1 Type IV pilin PilA compare
OH686_02705 +0.4 2.7 Flagellar motor rotation protein MotA compare
OH686_18370 +0.4 1.3 hypothetical protein compare
OH686_17655 +0.4 1.5 Organic hydroperoxide resistance protein compare
OH686_06340 +0.4 2.4 D-3-phosphoglycerate dehydrogenase compare
OH686_02315 +0.4 1.4 hypothetical protein' product='hypothetical protein compare
OH686_23035 +0.4 0.6 hypothetical protein' product='hypothetical protein compare
OH686_02855 +0.4 2.7 Flagellar regulatory protein FleQ compare
OH686_07860 +0.4 2.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
OH686_02780 +0.4 2.5 Flagellar motor switch protein FliN compare
OH686_00380 +0.4 1.4 hypothetical protein compare
OH686_11035 +0.4 1.6 hypothetical protein compare
OH686_20525 +0.4 0.9 hypothetical protein' product='hypothetical protein compare
OH686_10585 +0.4 3.0 Molybdopterin-synthase adenylyltransferase compare
OH686_05745 +0.4 1.8 hypothetical protein compare
OH686_15535 +0.4 3.1 hypothetical protein compare
OH686_02955 +0.4 2.7 Flagellar basal-body rod protein FlgF compare
OH686_20815 +0.4 0.7 hypothetical protein compare
OH686_10595 +0.4 3.1 Serine acetyltransferase compare
OH686_08355 +0.4 0.7 UPF0102 protein YraN compare
OH686_11080 +0.4 3.0 Ribosomal protein S6--L-glutamate ligase compare
OH686_02240 +0.4 0.5 hypothetical protein compare
OH686_05775 +0.4 1.8 hypothetical protein compare
OH686_18830 +0.3 1.9 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA compare
OH686_03430 +0.3 1.6 hypothetical protein compare
OH686_02745 +0.3 3.1 flagellar biosynthesis protein FlhA compare
OH686_07755 +0.3 1.5 Uncharacterized zinc-finger containing protein YbiI compare
OH686_12385 +0.3 1.7 hypothetical protein compare
OH686_22460 +0.3 0.8 hypothetical protein compare
OH686_13235 +0.3 0.7 hypothetical protein compare
OH686_16390 +0.3 3.0 Type IV fimbriae expression regulatory protein PilR compare
OH686_19005 +0.3 1.5 hypothetical protein compare
OH686_04025 +0.3 1.1 Nitrate ABC transporter, ATP-binding protein compare
OH686_21395 +0.3 0.9 hypothetical protein compare
OH686_18465 +0.3 1.8 Activator of osmoprotectant transporter ProP compare
OH686_03310 +0.3 1.7 hypothetical protein compare
OH686_02795 +0.3 1.4 Flagellar hook-length control protein FliK compare
OH686_02770 +0.3 2.0 flagellar biosynthetic protein FliP compare
OH686_00480 +0.3 1.5 Lipase compare
OH686_15980 +0.3 1.9 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase compare
OH686_09655 +0.3 1.2 CDS compare
OH686_08020 +0.3 1.8 hypothetical protein compare
OH686_10060 +0.3 2.4 NADP-dependent malic enzyme compare
OH686_09575 +0.3 2.3 small multidrug resistance family (SMR) protein compare
OH686_02845 +0.3 2.6 Flagellar two-component response regulator FleR compare
OH686_21165 +0.3 1.2 PhnB protein / putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
OH686_13925 +0.3 2.3 Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD compare
OH686_02765 +0.3 1.8 flagellar biosynthetic protein FliQ compare
OH686_16100 +0.3 0.7 Glutathione S-transferase compare
OH686_11475 +0.3 2.6 glutamine synthetase family protein compare
OH686_01895 +0.3 1.5 K+-transporting ATPase, C subunit compare
OH686_08545 +0.3 0.7 hypothetical protein' product='hypothetical protein compare
OH686_21380 +0.3 1.4 hypothetical protein compare
OH686_14830 +0.3 1.0 CBS domain protein compare
OH686_23690 +0.3 1.5 hypothetical protein compare
OH686_08705 +0.3 2.4 Dipeptide ABC transporter, permease protein DppB compare
OH686_08550 +0.3 2.3 Ribosome hibernation promoting factor Hpf compare
OH686_12350 +0.3 1.0 hypothetical protein compare
OH686_21405 +0.3 1.0 hypothetical protein compare
OH686_22705 +0.3 0.8 Chromosome segregation compare
OH686_17015 +0.3 2.2 L-lactate permease compare
OH686_21115 +0.3 2.2 Transcriptional regulator, AsnC family compare
OH686_09795 +0.3 2.4 K(+)/H(+) antiporter NhaP2 compare
OH686_07495 +0.3 0.6 hypothetical protein compare
OH686_03095 +0.3 1.4 uncharacterized protein YggL compare
OH686_21880 +0.3 0.9 hypothetical protein' product='hypothetical protein compare
OH686_10050 +0.3 2.6 Type IV pilus biogenesis protein PilM compare
OH686_08955 +0.3 2.4 hypothetical protein compare
OH686_21155 +0.3 1.2 CDS compare
OH686_19610 +0.3 1.2 Transcriptional regulator, AraC family compare
OH686_02825 +0.3 1.4 Flagellar assembly protein FliH compare
OH686_05315 +0.3 1.2 ribonuclease D compare
OH686_22190 +0.3 2.2 Transcriptional regulator, AcrR family compare
OH686_21120 +0.3 2.7 Indolepyruvate ferredoxin oxidoreductase subunit compare
OH686_02105 +0.3 2.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OH686_09840 +0.3 2.2 putative membrane protein compare
OH686_16815 +0.3 1.5 Hemoglobin-like protein HbO compare
OH686_02295 +0.3 1.1 hypothetical protein' product='hypothetical protein compare
OH686_00435 +0.3 1.4 hypothetical protein compare
OH686_13850 +0.3 2.5 Adenylate cyclase compare
OH686_10700 +0.3 1.9 Transcription elongation factor compare
OH686_20045 +0.3 2.1 RNA polymerase sigma factor RpoE compare
OH686_18835 +0.3 1.9 putative lyase compare
OH686_04060 +0.3 2.3 hypothetical protein compare
OH686_17345 +0.3 2.0 Two-component system sensor histidine kinase compare
OH686_23350 +0.3 1.1 Arsenate reductase thioredoxin-coupled, LMWP family compare
OH686_01410 +0.3 0.6 hypothetical protein compare
OH686_07765 +0.3 1.8 Oxaloacetate decarboxylase compare
OH686_01175 +0.3 1.2 hypothetical protein compare
OH686_14515 +0.3 1.2 hypothetical protein compare
OH686_17775 +0.3 1.3 hypothetical protein compare
OH686_10795 +0.3 1.6 hypothetical protein compare
OH686_01435 +0.3 0.8 CDS compare
OH686_09245 +0.3 1.2 hypothetical protein compare
OH686_16005 +0.3 1.3 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
OH686_22075 +0.3 1.0 Low molecular weight protein tyrosine phosphatase compare
OH686_12760 +0.3 1.4 hypothetical protein compare
OH686_16685 +0.3 1.3 Urease accessory protein UreE compare
OH686_19700 +0.3 1.5 hypothetical protein compare
OH686_18225 +0.3 1.3 Putative NADPH-quinone reductase (modulator of drug activity B) compare
OH686_16395 +0.3 2.2 Two-component sensor PilS compare
OH686_02760 +0.3 2.0 flagellar biosynthetic protein FliR compare
OH686_11505 +0.3 1.5 agmatine deiminase compare
OH686_10800 +0.3 1.8 DNA ligase (NAD(+)) compare
OH686_23655 +0.2 1.1 3-demethylubiquinone-9 3-methyltransferase compare
OH686_07200 +0.2 1.0 hypothetical protein compare
OH686_02820 +0.2 2.1 flagellar protein export ATPase FliI compare
OH686_06805 +0.2 0.9 hypothetical protein compare
OH686_13895 +0.2 1.9 Alginate biosynthesis two-component system response regulator AlgR compare
OH686_12405 +0.2 0.6 hypothetical protein compare
OH686_22560 +0.2 0.4 hypothetical protein compare
OH686_06260 +0.2 1.0 hypothetical protein compare
OH686_13325 +0.2 1.5 Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake compare
OH686_02710 +0.2 2.0 Chemotaxis response regulator protein-glutamate methylesterase CheB compare
OH686_20370 +0.2 1.1 Cys-tRNA(Pro) deacylase YbaK compare
OH686_08795 +0.2 1.8 ABC-type amino acid transport/signal transduction system, periplasmic component/domain compare
OH686_10895 +0.2 1.8 type IV pilus biogenesis protein PilJ compare
OH686_05075 +0.2 1.3 ChlI component of cobalt chelatase compare
OH686_18840 +0.2 1.0 hypothetical protein compare
OH686_15550 +0.2 1.1 CDS compare
OH686_08870 +0.2 1.1 Thioesterase compare
OH686_21440 +0.2 1.5 hypothetical protein compare
OH686_13580 +0.2 1.1 Inner membrane protein YedI compare
OH686_06585 +0.2 1.0 hypothetical protein compare
OH686_15520 +0.2 1.5 Circadian clock protein KaiC compare
OH686_21610 +0.2 1.3 hypothetical protein compare
OH686_20325 +0.2 1.2 hypothetical protein' product='hypothetical protein compare
OH686_02375 +0.2 0.7 Rhodanese-related sulfurtransferase compare
OH686_00225 +0.2 1.3 cold shock domain protein CspD compare
OH686_21685 +0.2 1.3 hypothetical protein compare
OH686_13345 +0.2 1.7 Glutamate/aspartate ABC transporter, permease protein GltJ compare
OH686_06030 +0.2 0.8 hypothetical protein compare
OH686_15765 +0.2 1.7 Epoxide hydrolase compare
OH686_17690 +0.2 1.7 Carbonic anhydrase-like protein compare
OH686_15185 +0.2 1.8 putative oxidoreductase, nitronate monooxygenase family compare
OH686_02990 +0.2 1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. S08-1 in carbon source experiments

For carbon source D-Glucose across organisms