Experiment set1IT028 for Pseudomonas sp. S08-1

Compare to:

Sodium octanoate carbon source

200 most important genes:

  gene name fitness t score description  
OH686_14560 -5.2 -1.9 CDS compare
OH686_15135 -4.9 -4.3 Anthranilate phosphoribosyltransferase compare
OH686_06750 -4.9 -2.9 Transcriptional regulator, AcrR family compare
OH686_21330 -4.9 -1.5 aspartate kinase, monofunctional class compare
OH686_04445 -4.9 -12.6 Phosphoribosylanthranilate isomerase compare
OH686_09190 -4.9 -11.8 Thiamin-phosphate pyrophosphorylase compare
OH686_11400 -4.8 -13.5 threonine ammonia-lyase, biosynthetic compare
OH686_10090 -4.8 -1.0 Cell division protein compare
OH686_10020 -4.7 -4.5 Shikimate kinase I compare
OH686_14575 -4.6 -8.3 Imidazoleglycerol-phosphate dehydratase compare
OH686_01115 -4.6 -1.0 hypothetical protein compare
OH686_09205 -4.6 -14.9 TPR repeat, SEL1 subfamily compare
OH686_13545 -4.5 -11.7 RidA/YER057c/UK114 superfamily protein compare
OH686_05790 -4.5 -11.7 Tetrapartite efflux system, inner membrane component FusBC-like compare
OH686_19190 -4.5 -15.4 quinolinate synthetase complex, A subunit compare
OH686_18985 -4.5 -19.9 hypothetical protein compare
OH686_04475 -4.5 -8.0 3-isopropylmalate dehydratase small subunit compare
OH686_11120 -4.4 -11.8 amino-acid N-acetyltransferase compare
OH686_17880 -4.4 -0.9 hypothetical protein compare
OH686_18935 -4.4 -1.3 hypothetical protein compare
OH686_20045 -4.4 -17.9 RNA polymerase sigma factor RpoE compare
OH686_12425 -4.4 -12.6 tryptophan synthase, beta subunit compare
OH686_10310 -4.4 -17.4 Acyl-CoA dehydrogenase 2 [fadN-fadA-fadE operon] compare
OH686_14590 -4.3 -13.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
OH686_09555 -4.3 -14.3 phosphoserine phosphatase SerB compare
OH686_14580 -4.2 -14.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
OH686_13200 -4.2 -19.9 acetyl-CoA carboxylase, biotin carboxylase subunit compare
OH686_15125 -4.2 -20.1 anthranilate synthase component I compare
OH686_08470 -4.2 -17.4 Histidinol dehydrogenase compare
OH686_10005 -4.2 -27.5 Glutamate synthase [NADPH] large chain compare
OH686_13205 -4.2 -20.7 oxaloacetate decarboxylase alpha subunit compare
OH686_00170 -4.2 -20.2 Isocitrate lyase compare
OH686_08565 -4.2 -0.9 Phosphocarrier protein, nitrogen regulation associated compare
OH686_07380 -4.2 -8.0 Transcriptional regulator, AcrR family compare
OH686_00475 -4.2 -14.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
OH686_15140 -4.2 -19.4 Indole-3-glycerol phosphate synthase compare
OH686_15890 -4.1 -17.2 Outer membrane channel TolC (OpmH) compare
OH686_11005 -4.1 -12.7 methionine biosynthesis protein MetW compare
OH686_13885 -4.1 -11.9 argininosuccinate lyase compare
OH686_14100 -4.1 -16.7 dihydroxy-acid dehydratase compare
OH686_04470 -4.1 -17.5 3-isopropylmalate dehydrogenase compare
OH686_10820 -4.1 -14.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
OH686_17065 -4.1 -1.5 chaperone protein DnaJ compare
OH686_11000 -4.1 -16.9 homoserine O-acetyltransferase compare
OH686_08475 -4.1 -16.5 ATP phosphoribosyltransferase compare
OH686_04415 -4.1 -13.1 O-succinylhomoserine sulfhydrylase compare
OH686_23880 -4.1 -4.5 Transcriptional regulator, AcrR family compare
OH686_08125 -4.1 -14.3 acetolactate synthase, small subunit compare
OH686_14285 -4.1 -14.9 Thiazole synthase compare
OH686_16520 -4.0 -14.7 nicotinate-nucleotide diphosphorylase (carboxylating) compare
OH686_13400 -4.0 -15.0 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
OH686_10495 -4.0 -0.8 DNA polymerase III epsilon subunit compare
OH686_11285 -4.0 -19.7 D-2-hydroxyglutarate dehydrogenase compare
OH686_05780 -4.0 -14.1 Tetrapartite efflux system, membrane fusion component FusE-like compare
OH686_10920 -4.0 -7.2 TonB protein compare
OH686_06185 -4.0 -1.2 Rubredoxin compare
OH686_15885 -4.0 -21.5 phosphomethylpyrimidine synthase compare
OH686_10350 -4.0 -20.8 8-amino-7-oxononanoate synthase compare
OH686_15195 -4.0 -10.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
OH686_10000 -3.9 -18.6 Glutamate synthase [NADPH] small chain compare
OH686_08130 -3.9 -19.4 acetolactate synthase, large subunit, biosynthetic type compare
OH686_03930 -3.9 -13.9 argininosuccinate synthase compare
OH686_08465 -3.9 -18.7 histidinol-phosphate transaminase compare
OH686_03470 -3.9 -14.7 Sulfite reductase [NADPH] hemoprotein beta-component compare
OH686_00285 -3.9 -11.5 Precorrin-2 oxidase or Sirohydrochlorin ferrochelatase activity of CysG / Uroporphyrinogen-III methyltransferase compare
OH686_10345 -3.9 -5.3 Pimeloyl-[acyl-carrier protein] methyl ester esterase BioH compare
OH686_17390 -3.9 -16.0 Iron-regulated protein A precursor compare
OH686_11700 -3.9 -7.9 Glutaryl-CoA dehydrogenase compare
OH686_08365 -3.9 -4.9 Uncharacterized protein YraP compare
OH686_05785 -3.9 -8.5 Tetrapartite efflux system component, FusD-like compare
OH686_18330 -3.8 -1.1 CDS compare
OH686_01220 -3.8 -1.1 Repair of Iron Centers di-iron protein compare
OH686_05750 -3.8 -13.1 Long-chain-fatty-acid--CoA ligase compare
OH686_20405 -3.8 -8.1 ornithine carbamoyltransferase compare
OH686_07900 -3.8 -10.3 Molybdopterin-synthase adenylyltransferase compare
OH686_23215 -3.8 -1.1 hypothetical protein compare
OH686_11420 -3.8 -11.9 Phosphoserine phosphatase compare
OH686_04480 -3.7 -11.7 3-isopropylmalate dehydratase large subunit compare
OH686_10980 -3.7 -2.6 pyrroline-5-carboxylate reductase compare
OH686_09445 -3.7 -14.5 ATP phosphoribosyltransferase, regulatory subunit compare
OH686_10355 -3.7 -19.6 biotin synthase compare
OH686_10405 -3.7 -15.2 malate synthase G compare
OH686_10850 -3.7 -21.8 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
OH686_21960 -3.7 -5.0 repressor LexA compare
OH686_12430 -3.7 -15.2 tryptophan synthase, alpha subunit compare
OH686_16305 -3.6 -7.0 Glutamate 5-kinase / RNA-binding C-terminal domain PUA compare
OH686_01730 -3.6 -10.7 Cys regulon transcriptional activator CysB compare
OH686_22565 -3.6 -11.2 Protease HtpX compare
OH686_11705 -3.5 -15.2 Uncharacterized protein compare
OH686_08115 -3.5 -10.4 ketol-acid reductoisomerase compare
OH686_10160 -3.5 -6.0 Phosphoribosyl-AMP cyclohydrolase compare
OH686_21925 -3.5 -5.9 fatty oxidation complex, alpha subunit FadB compare
OH686_20895 -3.5 -3.1 integration host factor, beta subunit compare
OH686_03475 -3.5 -4.3 Oxidoreductase putative compare
OH686_12250 -3.5 -4.8 Zinc ABC transporter, permease protein ZnuB compare
OH686_13600 -3.5 -15.1 N-acetylglutamate kinase compare
OH686_10625 -3.4 -10.4 DNA-directed RNA polymerase, beta subunit/140 kD subunit compare
OH686_08525 -3.4 -2.9 LPS export ABC transporter periplasmic protein LptC compare
OH686_03395 -3.4 -1.0 hypothetical protein compare
OH686_17385 -3.4 -10.9 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
OH686_13190 -3.4 -3.1 Predicted regulator PutR for proline utilization, GntR family compare
OH686_14280 -3.4 -9.4 thiamine biosynthesis protein ThiS compare
OH686_17615 -3.4 -19.2 Multicopper oxidase compare
OH686_17165 -3.4 -3.3 polyribonucleotide nucleotidyltransferase compare
OH686_03605 -3.4 -10.6 ABC transporter premease protein compare
OH686_10165 -3.3 -5.6 Phosphoribosyl-ATP pyrophosphatase compare
OH686_11470 -3.3 -18.0 Omega-amino acid--pyruvate aminotransferase compare
OH686_13815 -3.3 -1.6 iron donor protein CyaY compare
OH686_19195 -3.3 -4.5 Exported zinc metalloprotease YfgC precursor compare
OH686_04115 -3.3 -1.5 hypothetical protein compare
OH686_09340 -3.3 -6.7 Gamma-glutamyl phosphate reductase compare
OH686_13565 -3.3 -1.4 UPF0701 protein YicC compare
OH686_22005 -3.3 -10.2 Soluble pyridine nucleotide transhydrogenase compare
OH686_10320 -3.3 -10.6 Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] compare
OH686_17405 -3.3 -2.7 Predicted transmembrane protein compare
OH686_04585 -3.2 -11.8 Biosynthetic Aromatic amino acid aminotransferase alpha or Aromatic-amino-acid aminotransferase compare
OH686_10335 -3.2 -5.8 dethiobiotin synthase compare
OH686_22050 -3.2 -1.8 MotA/TolQ/ExbB proton channel family protein compare
OH686_00665 -3.2 -9.3 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
OH686_08560 -3.2 -9.8 RNase adapter protein RapZ compare
OH686_17570 -3.1 -14.5 2-isopropylmalate synthase compare
OH686_21370 -3.1 -3.8 tRNA-Arg compare
OH686_01705 -3.1 -15.7 hypothetical protein compare
OH686_13120 -3.1 -4.8 hypothetical protein' product='hypothetical protein compare
OH686_13475 -3.1 -7.7 Chorismate--pyruvate lyase compare
OH686_11430 -3.1 -17.3 Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
OH686_21945 -3.1 -9.6 hypothetical protein compare
OH686_15040 -3.0 -8.9 ribosomal RNA small subunit methyltransferase A compare
OH686_09305 -3.0 -16.8 Septum-associated rare lipoprotein A compare
OH686_22870 -3.0 -1.7 integration host factor, alpha subunit compare
OH686_09185 -3.0 -8.6 Hydroxymethylpyrimidine phosphate kinase ThiD compare
OH686_13590 -3.0 -2.9 Orotate phosphoribosyltransferase compare
OH686_07585 -3.0 -5.7 3-dehydroquinate dehydratase, type II compare
OH686_04790 -3.0 -7.4 OmpA family protein compare
OH686_12195 -3.0 -3.5 Periplasmic thiol:disulfide interchange protein DsbA compare
OH686_13425 -3.0 -8.4 phosphate ABC transporter, ATP-binding protein compare
OH686_10340 -3.0 -11.8 malonyl-acyl carrier protein O-methyltransferase BioC compare
OH686_21115 -2.9 -6.1 Transcriptional regulator, AsnC family compare
OH686_20870 -2.9 -4.4 Chorismate mutase I / Prephenate dehydratase compare
OH686_18990 -2.9 -1.5 phosphoribosylglycinamide formyltransferase compare
OH686_01780 -2.9 -3.9 L,D-transpeptidase compare
OH686_12235 -2.9 -4.2 Zinc ABC transporter, substrate-binding protein ZnuA compare
OH686_01710 -2.8 -9.7 Alpha-L-glutamate ligase family protein compare
OH686_03280 -2.8 -1.1 hypothetical protein compare
OH686_21570 -2.8 -1.7 Phage recombination protein NinG compare
OH686_07815 -2.8 -1.7 DNA polymerase III chi subunit compare
OH686_13555 -2.8 -3.8 DNA-directed RNA polymerase, omega subunit compare
OH686_21120 -2.8 -16.8 Indolepyruvate ferredoxin oxidoreductase subunit compare
OH686_15625 -2.8 -11.3 dTDP-4-dehydrorhamnose reductase compare
OH686_03615 -2.8 -7.2 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) compare
OH686_00120 -2.7 -1.9 NADH-ubiquinone oxidoreductase chain I compare
OH686_21300 -2.7 -7.2 arginine N-succinyltransferase compare
OH686_14645 -2.7 -6.0 Carboxyl-terminal protease compare
OH686_13410 -2.7 -13.9 Phosphate ABC transporter, substrate-binding protein PstS compare
OH686_13800 -2.7 -1.8 diaminopimelate decarboxylase compare
OH686_14595 -2.7 -6.2 Imidazole glycerol phosphate synthase cyclase subunit compare
OH686_00140 -2.7 -3.2 NADH-ubiquinone oxidoreductase chain E compare
OH686_02735 -2.7 -6.2 Flagellar synthesis regulator FleN compare
OH686_05315 -2.7 -5.2 ribonuclease D compare
OH686_21295 -2.6 -3.1 arginine/ornithine succinyltransferase, alpha subunit compare
OH686_00115 -2.6 -1.3 NADH-ubiquinone oxidoreductase chain J compare
OH686_01650 -2.6 -11.0 Ribonuclease E inhibitor RraA compare
OH686_09650 -2.6 -12.6 Carbamoyltransferase in large core OS assembly cluster compare
OH686_08460 -2.6 -11.4 Outer membrane stress sensor protease DegS compare
OH686_16240 -2.6 -10.9 Energy-dependent translational throttle protein EttA compare
OH686_04450 -2.6 -8.2 tRNA pseudouridine(38-40) synthase compare
OH686_09625 -2.6 -6.5 hypothetical protein compare
OH686_00135 -2.6 -2.5 NADH oxidoreductase (quinone), F subunit compare
OH686_00050 -2.6 -1.3 putative lipoprotein compare
OH686_02725 -2.6 -3.8 Chemotaxis regulator - transmits chemoreceptor signals to flagellar motor components CheY compare
OH686_00100 -2.5 -2.5 NADH-ubiquinone oxidoreductase chain M compare
OH686_10910 -2.5 -3.1 twitching motility protein PilG compare
OH686_04290 -2.5 -7.5 ase-related protein compare
OH686_00130 -2.5 -3.4 NADH dehydrogenase (quinone), G subunit compare
OH686_13415 -2.5 -12.5 Phosphate ABC transporter, permease protein PstC compare
OH686_11060 -2.5 -5.9 phosphoenolpyruvate carboxykinase (ATP) compare
OH686_06555 -2.5 -9.9 probable glucosyl transferase compare
OH686_00145 -2.4 -4.7 NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D compare
OH686_00095 -2.4 -4.7 NADH-ubiquinone oxidoreductase chain N compare
OH686_04425 -2.4 -2.0 Colicin V production protein compare
OH686_19640 -2.4 -3.2 DNA recombination-dependent growth factor RdgC compare
OH686_03765 -2.4 -2.4 hypothetical protein compare
OH686_00105 -2.4 -3.9 NADH-ubiquinone oxidoreductase chain L compare
OH686_20435 -2.4 -1.3 monothiol glutaredoxin, Grx4 family compare
OH686_07385 -2.4 -4.2 Copper chaperone compare
OH686_08220 -2.4 -9.3 2-dehydropantoate 2-reductase compare
OH686_18020 -2.4 -10.7 hypothetical protein compare
OH686_00150 -2.4 -3.2 NADH-ubiquinone oxidoreductase chain B compare
OH686_02205 -2.3 -1.4 cytochrome c oxidase, cbb3-type, subunit III compare
OH686_10200 -2.3 -2.2 D-tyrosyl-tRNA(Tyr) deacylase compare
OH686_09310 -2.3 -10.0 lytic murein transglycosylase B compare
OH686_03635 -2.3 -8.4 endopeptidase La compare
OH686_17765 -2.3 -1.4 threonine synthase compare
OH686_21015 -2.3 -2.7 fumarate hydratase, class II compare
OH686_21350 -2.3 -2.3 tRNA-Arg compare
OH686_01700 -2.3 -5.5 hypothetical protein compare
OH686_09505 -2.3 -3.1 3'-to-5' oligoribonuclease (orn) compare
OH686_17100 -2.3 -1.8 Cell division-associated, ATP-dependent zinc metalloprotease FtsH compare
OH686_20040 -2.3 -15.8 L-aspartate oxidase compare
OH686_07395 -2.3 -9.7 copper-translocating P-type ATPase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium octanoate in Pseudomonas sp. S08-1

For carbon source Sodium octanoate across organisms