Experiment set1IT027 for Pseudomonas simiae WCS417

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -7.8 -4.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_27040 -6.8 -3.8 3-phosphoglycerate dehydrogenase compare
PS417_18600 -5.8 -5.4 isopropylmalate isomerase compare
PS417_04415 -5.7 -11.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18585 -5.7 -8.5 3-isopropylmalate dehydrogenase compare
PS417_02510 -5.7 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18560 -5.4 -11.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01575 -5.4 -9.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26740 -5.4 -18.7 homoserine acetyltransferase compare
PS417_00185 -5.4 -6.8 tryptophan synthase subunit beta compare
PS417_23545 -5.3 -5.2 gamma-glutamyl kinase compare
PS417_25720 -5.3 -12.0 anthranilate synthase component II compare
PS417_23800 -5.3 -15.3 ketol-acid reductoisomerase compare
PS417_25725 -5.2 -15.4 anthranilate synthase component I compare
PS417_01565 -5.1 -4.6 imidazole glycerol phosphate synthase compare
PS417_09725 -5.0 -11.2 transporter compare
PS417_23995 -4.6 -1.8 preprotein translocase subunit SecG compare
PS417_16465 -4.6 -14.2 sirohydrochlorin ferrochelatase compare
PS417_24745 -4.6 -9.2 gamma-glutamyl phosphate reductase compare
PS417_23810 -4.6 -11.8 acetolactate synthase 3 catalytic subunit compare
PS417_23805 -4.5 -10.0 acetolactate synthase 3 regulatory subunit compare
PS417_00180 -4.5 -5.3 tryptophan synthase subunit alpha compare
PS417_18595 -4.4 -5.4 3-isopropylmalate dehydratase compare
PS417_04420 -4.4 -12.0 histidinol dehydrogenase compare
PS417_26745 -4.3 -9.1 methionine biosynthesis protein MetW compare
PS417_26730 -4.2 -2.3 pyrroline-5-carboxylate reductase compare
PS417_12290 -4.0 -10.8 sulfite reductase compare
PS417_02005 -4.0 -14.5 glutamate synthase compare
PS417_25710 -3.9 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_25715 -3.7 -5.1 anthranilate phosphoribosyltransferase compare
PS417_18530 -3.7 -5.7 O-succinylhomoserine sulfhydrylase compare
PS417_22690 -3.7 -9.2 phosphogluconate dehydratase compare
PS417_02415 -3.6 -6.7 phosphoserine phosphatase compare
PS417_05595 -3.6 -7.9 ornithine carbamoyltransferase compare
PS417_27195 -3.6 -2.7 N-acetylglutamate synthase compare
PS417_26890 -3.5 -6.4 dihydroxy-acid dehydratase compare
PS417_01580 -3.4 -2.1 imidazole glycerol phosphate synthase compare
PS417_02000 -3.4 -16.1 glutamate synthase compare
PS417_12855 -3.4 -5.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01850 -3.4 -9.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18395 -3.2 -4.1 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_23110 -3.2 -5.8 2-isopropylmalate synthase compare
PS417_01605 -3.1 -2.9 phosphoglycerate mutase compare
PS417_24155 -3.1 -5.0 ATP-binding protein compare
PS417_06375 -3.0 -1.9 deoxycytidine triphosphate deaminase compare
PS417_27795 -2.8 -2.5 orotate phosphoribosyltransferase compare
PS417_18400 -2.7 -3.9 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_20125 -2.7 -7.8 phosphoribosylglycinamide formyltransferase compare
PS417_08125 -2.5 -2.5 prephenate dehydratase compare
PS417_14940 -2.5 -4.1 LysR family transcriptional regulator compare
PS417_20985 -2.4 -6.7 porin compare
PS417_28220 -2.2 -4.8 LysR family transcriptional regulator compare
PS417_23770 -2.2 -3.6 exodeoxyribonuclease V subunit alpha compare
PS417_01570 -2.2 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_26985 -1.9 -6.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27875 -1.8 -9.4 histidine kinase compare
PS417_21035 -1.8 -6.6 multidrug transporter compare
PS417_18390 -1.7 -5.7 LacI family transcriptional regulator compare
PS417_20160 -1.7 -3.5 cysteine synthase compare
PS417_01560 -1.6 -3.0 imidazoleglycerol-phosphate dehydratase compare
PS417_09705 -1.6 -4.7 hypothetical protein compare
PS417_23775 -1.4 -2.0 exodeoxyribonuclease V subunit beta compare
PS417_20610 -1.3 -2.6 hypothetical protein compare
PS417_08225 -1.3 -5.7 acetolactate synthase compare
PS417_22445 -1.3 -4.4 ATP-dependent DNA helicase RuvB compare
PS417_16490 -1.3 -2.1 cell division protein FtsK compare
PS417_21125 -1.3 -5.5 phosphoadenosine phosphosulfate reductase compare
PS417_26995 -1.2 -7.0 phosphoserine phosphatase compare
PS417_08195 -1.1 -6.4 hypothetical protein compare
PS417_09720 -1.1 -2.5 methyltransferase compare
PS417_22385 -1.1 -6.5 quinolinate synthase A compare
PS417_08245 -1.1 -1.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_03925 -1.1 -5.1 nicotinate-nucleotide pyrophosphorylase compare
PS417_27835 -1.1 -7.8 endoribonuclease compare
PS417_12075 -1.0 -6.8 DNA-binding protein compare
PS417_09700 -1.0 -3.6 transaldolase compare
PS417_17610 -1.0 -1.6 AsnC family transcriptional regulator compare
PS417_04410 -1.0 -1.3 hypothetical protein compare
PS417_13800 -1.0 -1.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_08205 -1.0 -4.0 acetyltransferase compare
PS417_22450 -1.0 -1.7 ATP-dependent DNA helicase RuvA compare
PS417_10995 -1.0 -2.3 GntR family transcriptional regulator compare
PS417_21750 -1.0 -8.4 acetyl-CoA synthetase compare
PS417_22570 -1.0 -1.0 H-NS histone compare
PS417_05815 -0.9 -3.3 recombinase RecA compare
PS417_08200 -0.9 -3.9 hypothetical protein compare
PS417_07170 -0.9 -4.5 hypothetical protein compare
PS417_09710 -0.9 -2.2 dehydrogenase compare
PS417_23900 -0.9 -5.9 poly(A) polymerase compare
PS417_21655 -0.9 -1.5 aspartate kinase compare
PS417_24835 -0.9 -4.2 hypothetical protein compare
PS417_04585 -0.8 -1.7 hypothetical protein compare
PS417_11845 -0.8 -4.4 RpiR family transcriptional regulator compare
PS417_25175 -0.8 -2.4 hypothetical protein compare
PS417_08230 -0.8 -1.9 lipopolysaccharide biosynthesis protein RfbH compare
PS417_20665 -0.8 -3.6 hypothetical protein compare
PS417_19705 -0.8 -2.3 flagellar biosynthesis regulator FlhF compare
PS417_22115 -0.8 -2.4 transcriptional regulator compare
PS417_27035 -0.8 -3.5 FAD-linked oxidase compare
PS417_15750 -0.8 -1.6 protease compare
PS417_06205 -0.7 -5.1 methionine aminopeptidase compare
PS417_10220 -0.7 -2.7 hypothetical protein compare
PS417_01710 -0.7 -4.6 histidine utilization repressor compare
PS417_24100 -0.7 -4.6 transcriptional regulator PdhR compare
PS417_27870 -0.7 -3.5 ATP-dependent DNA helicase RecG compare
PS417_04595 -0.7 -2.5 cell division protein MraZ compare
PS417_28510 -0.7 -3.6 chromosome partitioning protein compare
PS417_25940 -0.7 -3.7 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_17435 -0.7 -5.2 dehydrogenase compare
PS417_17495 -0.7 -4.1 multidrug ABC transporter permease compare
PS417_27585 -0.7 -2.2 diaminopimelate epimerase compare
PS417_17425 -0.7 -3.2 hypothetical protein compare
PS417_05535 -0.7 -1.7 Fis family transcriptional regulator compare
PS417_13870 -0.7 -1.2 hypothetical protein compare
PS417_07875 -0.7 -1.0 hypothetical protein compare
PS417_16510 -0.7 -2.1 Clp protease ClpX compare
PS417_21425 -0.7 -1.5 4-amino-4-deoxychorismate lyase compare
PS417_04270 -0.7 -3.6 ribonuclease G compare
PS417_08680 -0.7 -1.5 flagellar biosynthesis protein FlhB compare
PS417_05100 -0.7 -1.9 RNA polymerase sigma factor compare
PS417_17480 -0.7 -3.6 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_26815 -0.7 -1.6 peptidase M16 compare
PS417_08025 -0.6 -1.2 acetylornithine aminotransferase compare
PS417_13165 -0.6 -2.3 peroxidase compare
PS417_00960 -0.6 -2.2 transcriptional regulator compare
PS417_25920 -0.6 -4.8 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_26990 -0.6 -1.0 RNA pyrophosphohydrolase compare
PS417_16400 -0.6 -1.9 NAD(P)H-quinone oxidoreductase compare
PS417_04500 -0.6 -1.7 hypothetical protein compare
PS417_13205 -0.6 -1.3 isochorismate-pyruvate lyase compare
PS417_27715 -0.6 -1.2 Fe-S oxidoreductase compare
PS417_15095 -0.6 -1.8 hypothetical protein compare
PS417_05165 -0.6 -2.0 cytosol aminopeptidase compare
PS417_19425 -0.6 -0.9 allantoicase compare
PS417_21705 -0.6 -3.1 arginine N-succinyltransferase compare
PS417_06710 -0.6 -1.7 beta-ketoadipyl CoA thiolase compare
PS417_01290 -0.6 -1.6 ADP-ribose diphosphatase compare
PS417_25930 -0.6 -3.0 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_15285 -0.6 -1.0 type VI secretion protein compare
PS417_21510 -0.6 -1.3 histidine kinase compare
PS417_13510 -0.6 -1.0 polyketide cyclase compare
PS417_19605 -0.6 -1.0 hypothetical protein compare
PS417_15510 -0.6 -1.7 hypothetical protein compare
PS417_17455 -0.6 -2.2 cytochrome C compare
PS417_06895 -0.6 -1.8 DNA-binding protein compare
PS417_14980 -0.6 -0.9 universal stress protein UspA compare
PS417_12660 -0.6 -1.3 hypothetical protein compare
PS417_05045 -0.6 -2.5 acetamidase compare
PS417_11440 -0.6 -1.8 hypothetical protein compare
PS417_09915 -0.6 -1.5 hypothetical protein compare
PS417_11510 -0.6 -1.4 AraC family transcriptional regulator compare
PS417_25270 -0.6 -2.5 NrdR family transcriptional regulator compare
PS417_17505 -0.6 -2.7 LuxR family transcriptional regulator compare
PS417_15465 -0.6 -1.8 carboxynorspermidine decarboxylase compare
PS417_19155 -0.6 -2.1 DSBA oxidoreductase compare
PS417_24630 -0.6 -1.8 ATP-binding protein compare
PS417_20620 -0.6 -2.6 glycosyl transferase family 2 compare
PS417_04650 -0.6 -1.3 D-alanine--D-alanine ligase compare
PS417_18055 -0.5 -1.2 general secretion pathway protein GspK compare
PS417_16665 -0.5 -1.6 hypothetical protein compare
PS417_27435 -0.5 -2.7 polyphosphate kinase compare
PS417_15675 -0.5 -1.9 chemotaxis protein compare
PS417_17485 -0.5 -2.9 membrane protein compare
PS417_16855 -0.5 -0.8 cation:proton antiporter compare
PS417_03550 -0.5 -2.0 hypothetical protein compare
PS417_11485 -0.5 -1.3 AraC family transcriptional regulator compare
PS417_07985 -0.5 -1.0 AbrB family transcriptional regulator compare
PS417_15710 -0.5 -1.0 nitrate reductase compare
PS417_27305 -0.5 -2.6 5-formyltetrahydrofolate cyclo-ligase compare
PS417_26850 -0.5 -0.8 twin-arginine translocation pathway signal protein compare
PS417_27535 -0.5 -4.0 chemotaxis protein CheY compare
PS417_05840 -0.5 -2.3 LuxR family transcriptional regulator compare
PS417_12740 -0.5 -2.3 secretion protein HlyD compare
PS417_17450 -0.5 -2.5 amino acid ABC transporter substrate-binding protein compare
PS417_07175 -0.5 -1.5 beta-lactamase compare
PS417_09150 -0.5 -1.7 energy transducer TonB compare
PS417_28325 -0.5 -1.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_22895 -0.5 -2.8 tyrosine recombinase XerD compare
PS417_08380 -0.5 -3.0 ABC transporter ATP-binding protein compare
PS417_14075 -0.5 -1.5 hypothetical protein compare
PS417_28100 -0.5 -2.1 glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data) compare
PS417_15780 -0.5 -1.9 membrane protein compare
PS417_10575 -0.5 -1.1 DNA alkylation repair protein compare
PS417_08430 -0.5 -2.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_18780 -0.5 -0.9 flavin reductase compare
PS417_20340 -0.5 -1.5 hypothetical protein compare
PS417_15650 -0.5 -1.2 glutamine amidotransferase compare
PS417_11670 -0.5 -1.7 multidrug transporter MATE compare
PS417_10015 -0.5 -0.8 hypothetical protein compare
PS417_08990 -0.5 -1.9 ABC transporter substrate-binding protein compare
PS417_24935 -0.5 -0.5 hypothetical protein compare
PS417_20365 -0.5 -1.4 Cro/Cl family transcriptional regulator compare
PS417_19065 -0.5 -0.9 monooxygenase compare
PS417_13245 -0.5 -1.4 saccharopine dehydrogenase compare
PS417_11520 -0.5 -1.3 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_04080 -0.5 -1.8 peptide ABC transporter substrate-binding protein compare
PS417_17490 -0.5 -1.3 ABC transporter ATP-binding protein compare
PS417_13305 -0.5 -0.8 hypothetical protein compare
PS417_01735 -0.5 -1.8 ABC transporter permease compare
PS417_28280 -0.5 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in carbon source experiments

For carbon source D-Ribose across organisms