Experiment set1IT027 for Pseudomonas fluorescens SBW25

Compare to:

L-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -7.0 -8.3 S41 family peptidase compare
PFLU_RS06320 -6.5 -4.5 OmpH family outer membrane protein compare
PFLU_RS14550 -6.5 -4.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS03645 -6.0 -8.2 tetratricopeptide repeat protein compare
PFLU_RS27370 -5.6 -10.7 anthranilate phosphoribosyltransferase compare
PFLU_RS22095 -5.4 -5.3 GTP diphosphokinase compare
PFLU_RS07695 -5.4 -3.7 beta-N-acetylhexosaminidase compare
PFLU_RS20540 -5.1 -6.1 phosphoribosylanthranilate isomerase compare
PFLU_RS12975 -5.1 -5.0 DUF934 domain-containing protein compare
PFLU_RS28535 -5.1 -12.8 dihydroxy-acid dehydratase compare
PFLU_RS11475 -5.1 -2.3 histidine kinase compare
PFLU_RS02490 -5.0 -11.7 phosphoserine phosphatase SerB compare
PFLU_RS28650 -4.9 -6.8 RNA pyrophosphohydrolase compare
PFLU_RS01625 -4.9 -2.2 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28645 -4.9 -16.1 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS01620 -4.8 -11.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS24125 -4.8 -3.3 cold-shock protein compare
PFLU_RS02365 -4.8 -13.1 glycosyltransferase compare
PFLU_RS08065 -4.7 -10.7 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS07650 -4.7 -15.7 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS27620 -4.6 -17.5 acyl-CoA dehydrogenase compare
PFLU_RS25640 -4.6 -11.1 ketol-acid reductoisomerase compare
PFLU_RS04445 -4.5 -4.4 ABC transporter substrate-binding protein compare
PFLU_RS25715 -4.3 -5.9 RNA polymerase-binding protein DksA compare
PFLU_RS22105 -4.3 -4.2 cysteine synthase CysM compare
PFLU_RS27365 -4.3 -9.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01605 -4.2 -7.6 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS28695 -4.2 -7.0 phosphoglycerate dehydrogenase compare
PFLU_RS02370 -4.2 -11.1 glycosyltransferase compare
PFLU_RS04470 -4.2 -14.6 histidinol dehydrogenase compare
PFLU_RS04440 -4.1 -4.9 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS02590 -4.1 -8.7 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20580 -4.1 -13.9 3-isopropylmalate dehydratase large subunit compare
PFLU_RS00180 -4.0 -11.0 tryptophan synthase subunit beta compare
PFLU_RS20285 -4.0 -5.8 MerR family transcriptional regulator compare
PFLU_RS13360 -4.0 -2.9 DUF1652 domain-containing protein compare
PFLU_RS04465 -4.0 -9.7 ATP phosphoribosyltransferase compare
PFLU_RS27440 -3.9 -8.1 nucleotidyltransferase family protein compare
PFLU_RS01485 -3.9 -15.1 cellulase compare
PFLU_RS28325 -3.9 -9.0 energy transducer TonB compare
PFLU_RS11625 -3.9 -13.0 dihydroxy-acid dehydratase compare
PFLU_RS26640 -3.9 -12.2 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS29745 -3.9 -1.0 response regulator compare
PFLU_RS11640 -3.9 -6.2 aldehyde dehydrogenase (NADP(+)) compare
PFLU_RS20575 -3.8 -5.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS07785 -3.8 -13.3 VacJ family lipoprotein compare
PFLU_RS18505 -3.8 -11.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS25755 -3.8 -2.6 pantoate--beta-alanine ligase compare
PFLU_RS27445 -3.8 -12.4 phosphotransferase compare
PFLU_RS28655 -3.8 -17.2 HAD family hydrolase compare
PFLU_RS24765 -3.8 -19.9 2-isopropylmalate synthase compare
PFLU_RS01900 -3.8 -9.1 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS20565 -3.8 -17.3 3-isopropylmalate dehydrogenase compare
PFLU_RS26545 -3.8 -6.8 sel1 repeat family protein compare
PFLU_RS23675 -3.8 -1.0 hypothetical protein compare
PFLU_RS29875 -3.8 -12.9 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS29095 -3.6 -22.6 polyphosphate kinase 1 compare
PFLU_RS04430 -3.6 -7.3 ATP-binding cassette domain-containing protein compare
PFLU_RS24485 -3.6 -7.2 hypothetical protein compare
PFLU_RS25735 -3.6 -9.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS16960 -3.5 -1.3 LysR family transcriptional regulator compare
PFLU_RS09980 -3.5 -12.8 peptidase S41 compare
PFLU_RS11635 -3.5 -16.3 hypothetical protein compare
PFLU_RS09055 -3.4 -3.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS24825 -3.4 -3.8 Fe-S cluster assembly protein IscX compare
PFLU_RS26565 -3.4 -0.9 rRNA maturation RNase YbeY compare
PFLU_RS22740 -3.4 -6.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS28725 -3.4 -9.7 DUF2059 domain-containing protein compare
PFLU_RS03970 -3.4 -10.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25805 -3.3 -1.9 30S ribosome-binding factor RbfA compare
PFLU_RS27305 -3.3 -8.1 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS03765 -3.3 -12.4 sulfate adenylyltransferase subunit CysD compare
PFLU_RS08155 -3.3 -3.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS02460 -3.3 -8.4 alpha/beta fold hydrolase compare
PFLU_RS18420 -3.3 -1.2 hypothetical protein compare
PFLU_RS28965 -3.3 -12.7 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS24790 -3.2 -3.5 tetratricopeptide repeat protein compare
PFLU_RS29490 -3.2 -9.5 ribonuclease PH compare
PFLU_RS11630 -3.2 -11.8 MFS transporter compare
PFLU_RS12980 -3.2 -10.0 nitrite/sulfite reductase compare
PFLU_RS24475 -3.2 -15.9 AmpG family muropeptide MFS transporter compare
PFLU_RS26770 -3.2 -10.1 DedA family protein compare
PFLU_RS04385 -3.2 -5.3 RNase adapter RapZ compare
PFLU_RS31100 -3.2 -5.2 preprotein translocase subunit SecG compare
PFLU_RS28165 -3.1 -11.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS29880 -3.1 -9.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS30795 -3.1 -2.7 tail fiber domain-containing protein compare
PFLU_RS02000 -3.1 -15.0 penicillin-binding protein 1A compare
PFLU_RS23310 -3.0 -10.8 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS03770 -3.0 -10.0 sulfate adenylyltransferase subunit CysN compare
PFLU_RS13010 -3.0 -7.9 Fe-S biogenesis protein NfuA compare
PFLU_RS08160 -3.0 -7.9 sugar transferase compare
PFLU_RS00175 -3.0 -6.1 tryptophan synthase subunit alpha compare
PFLU_RS20635 -3.0 -1.1 tRNA-Ala compare
PFLU_RS28315 -3.0 -0.8 response regulator compare
PFLU_RS04070 -3.0 -3.5 peptide chain release factor 3 compare
PFLU_RS29515 -2.9 -9.5 RidA family protein compare
PFLU_RS28390 -2.9 -8.6 methionine biosynthesis protein MetW compare
PFLU_RS04650 -2.9 -12.8 ABC transporter substrate-binding protein compare
PFLU_RS20510 -2.9 -14.0 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24785 -2.9 -9.6 outer membrane protein assembly factor BamB compare
PFLU_RS00375 -2.9 -0.7 transcriptional repressor compare
PFLU_RS03610 -2.8 -7.7 redox-regulated ATPase YchF compare
PFLU_RS00415 -2.8 -3.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS26735 -2.8 -5.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS21300 -2.8 -7.0 cysteine hydrolase compare
PFLU_RS18530 -2.7 -5.4 DNA translocase FtsK compare
PFLU_RS01610 -2.7 -10.4 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS04435 -2.7 -5.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS24090 -2.7 -4.1 Holliday junction branch migration protein RuvA compare
PFLU_RS29885 -2.7 -6.0 LysR family transcriptional regulator compare
PFLU_RS22070 -2.7 -4.3 phosphoribosylglycinamide formyltransferase compare
PFLU_RS21290 -2.7 -1.0 hypothetical protein compare
PFLU_RS23305 -2.7 -9.2 arginine N-succinyltransferase compare
PFLU_RS24085 -2.6 -1.8 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS17865 -2.6 -2.5 hypothetical protein compare
PFLU_RS12580 -2.6 -8.3 MurR/RpiR family transcriptional regulator compare
PFLU_RS24025 -2.6 -9.8 quinolinate synthase NadA compare
PFLU_RS09575 -2.5 -4.9 FadR family transcriptional regulator compare
PFLU_RS21495 -2.5 -4.3 TlpA family protein disulfide reductase compare
PFLU_RS25750 -2.5 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS25730 -2.5 -14.3 PAS domain S-box protein compare
PFLU_RS18640 -2.4 -6.9 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS26595 -2.4 -1.6 lipoprotein compare
PFLU_RS01965 -2.4 -1.6 ATP-dependent protease subunit HslV compare
PFLU_RS28760 -2.3 -10.3 ABC transporter permease subunit compare
PFLU_RS28955 -2.3 -7.4 TIGR02449 family protein compare
PFLU_RS00310 -2.3 -1.2 twin transmembrane helix small protein compare
PFLU_RS07810 -2.3 -9.0 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS14810 -2.3 -2.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS01615 -2.3 -3.1 DUF2164 domain-containing protein compare
PFLU_RS01895 -2.3 -2.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS29735 -2.3 -6.7 HlyC/CorC family transporter compare
PFLU_RS13200 -2.2 -1.4 Ldh family oxidoreductase compare
PFLU_RS08130 -2.2 -1.3 flippase compare
PFLU_RS25800 -2.2 -3.4 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS23720 -2.2 -1.2 6-phosphogluconolactonase compare
PFLU_RS24905 -2.2 -10.8 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
PFLU_RS28775 -2.2 -6.6 polyamine ABC transporter substrate-binding protein compare
PFLU_RS07275 -2.2 -5.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS18650 -2.2 -2.0 NADH-quinone oxidoreductase subunit NuoI compare
PFLU_RS04930 -2.1 -6.5 PhoH family protein compare
PFLU_RS18395 -2.1 -2.5 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS25360 -2.1 -5.8 glutamate 5-kinase compare
PFLU_RS28765 -2.1 -7.3 polyamine ABC transporter ATP-binding protein compare
PFLU_RS24670 -2.1 -0.9 HigA family addiction module antidote protein compare
PFLU_RS29290 -2.1 -2.5 hypothetical protein compare
PFLU_RS27465 -2.1 -3.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS26150 -2.1 -9.0 ATP-binding protein compare
PFLU_RS19375 -2.1 -8.7 branched-chain amino acid aminotransferase compare
PFLU_RS05855 -2.1 -3.7 phage tail protein compare
PFLU_RS14820 -2.1 -4.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS27475 -2.1 -7.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS20515 -2.0 -1.4 amidophosphoribosyltransferase compare
PFLU_RS13540 -2.0 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS08615 -2.0 -1.9 YgdI/YgdR family lipoprotein compare
PFLU_RS02955 -2.0 -2.1 DUF2946 domain-containing protein compare
PFLU_RS30525 -2.0 -6.9 SDR family oxidoreductase compare
PFLU_RS11655 -2.0 -8.6 L-arabinose ABC transporter ATP-binding protein AraG compare
PFLU_RS00080 -2.0 -3.8 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB compare
PFLU_RS26490 -2.0 -3.4 cation diffusion facilitator family transporter compare
PFLU_RS29275 -2.0 -3.9 DUF484 family protein compare
PFLU_RS28385 -1.9 -7.7 homoserine O-acetyltransferase compare
PFLU_RS22330 -1.9 -0.7 cbb3-type cytochrome c oxidase subunit 3 compare
PFLU_RS02180 -1.9 -1.1 thioredoxin TrxC compare
PFLU_RS22595 -1.9 -3.7 OmpA family protein compare
PFLU_RS00465 -1.9 -5.9 spore maturation protein compare
PFLU_RS25760 -1.9 -7.0 glucose-6-phosphate isomerase compare
PFLU_RS22630 -1.9 -9.9 phosphoenolpyruvate synthase compare
PFLU_RS02205 -1.9 -3.8 potassium/proton antiporter compare
PFLU_RS01585 -1.9 -4.2 oxidative damage protection protein compare
PFLU_RS13665 -1.9 -1.5 MarR family transcriptional regulator compare
PFLU_RS28310 -1.9 -2.1 response regulator compare
PFLU_RS24820 -1.9 -1.1 nucleoside-diphosphate kinase compare
PFLU_RS07685 -1.9 -3.6 transcriptional repressor LexA compare
PFLU_RS22665 -1.9 -2.0 alanyl-tRNA editing protein compare
PFLU_RS23185 -1.9 -7.1 protein-glutamate O-methyltransferase CheR compare
PFLU_RS03395 -1.9 -3.9 ribosomal-protein-alanine N-acetyltransferase compare
PFLU_RS11650 -1.9 -4.2 arabinose ABC transporter substrate-binding protein compare
PFLU_RS11490 -1.8 -3.3 ABC transporter ATP-binding protein compare
PFLU_RS04660 -1.8 -3.7 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS02565 -1.8 -4.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS03555 -1.8 -1.0 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS26635 -1.8 -4.2 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS29710 -1.8 -4.8 chorismate lyase compare
PFLU_RS03980 -1.8 -4.0 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS28425 -1.8 -0.9 sulfur carrier protein ThiS compare
PFLU_RS23130 -1.8 -4.5 response regulator transcription factor compare
PFLU_RS30165 -1.8 -7.1 ParA family protein compare
PFLU_RS18625 -1.8 -6.4 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS14155 -1.8 -1.8 hypothetical protein compare
PFLU_RS11885 -1.8 -1.0 type II secretion system protein M compare
PFLU_RS09675 -1.7 -3.5 hypothetical protein compare
PFLU_RS20660 -1.7 -6.6 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS07245 -1.7 -5.7 DegQ family serine endoprotease compare
PFLU_RS12650 -1.7 -1.4 hypothetical protein compare
PFLU_RS04220 -1.7 -5.5 FadR family transcriptional regulator compare
PFLU_RS05595 -1.7 -3.6 alpha/beta fold hydrolase compare
PFLU_RS18635 -1.7 -4.3 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS29750 -1.7 -4.0 phosphate signaling complex protein PhoU compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Arabinose in Pseudomonas fluorescens SBW25

For carbon source L-Arabinose across organisms