Experiment set1IT026 for Pseudomonas simiae WCS417

Compare to:

D-Galactose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.3 -3.9 3-phosphoglycerate dehydrogenase compare
PS417_02510 -5.9 -9.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18585 -5.9 -8.0 3-isopropylmalate dehydrogenase compare
PS417_18600 -5.8 -4.5 isopropylmalate isomerase compare
PS417_24745 -5.6 -5.5 gamma-glutamyl phosphate reductase compare
PS417_23545 -5.6 -5.4 gamma-glutamyl kinase compare
PS417_04415 -5.5 -12.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25720 -5.5 -7.5 anthranilate synthase component II compare
PS417_25725 -5.5 -17.6 anthranilate synthase component I compare
PS417_23800 -5.4 -14.0 ketol-acid reductoisomerase compare
PS417_18560 -5.4 -12.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01855 -5.4 -5.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_23805 -5.3 -7.2 acetolactate synthase 3 regulatory subunit compare
PS417_02005 -5.2 -15.5 glutamate synthase compare
PS417_01565 -5.1 -4.7 imidazole glycerol phosphate synthase compare
PS417_27795 -5.1 -2.1 orotate phosphoribosyltransferase compare
PS417_04420 -4.8 -10.4 histidinol dehydrogenase compare
PS417_26740 -4.8 -14.9 homoserine acetyltransferase compare
PS417_01850 -4.7 -12.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00160 -4.7 -6.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_00185 -4.7 -7.1 tryptophan synthase subunit beta compare
PS417_23810 -4.6 -11.9 acetolactate synthase 3 catalytic subunit compare
PS417_01575 -4.5 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_16465 -4.5 -12.4 sirohydrochlorin ferrochelatase compare
PS417_28220 -4.4 -3.8 LysR family transcriptional regulator compare
PS417_12855 -4.4 -7.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18595 -4.4 -4.8 3-isopropylmalate dehydratase compare
PS417_23995 -4.3 -1.8 preprotein translocase subunit SecG compare
PS417_08125 -4.0 -2.4 prephenate dehydratase compare
PS417_27835 -4.0 -9.1 endoribonuclease compare
PS417_05595 -4.0 -8.3 ornithine carbamoyltransferase compare
PS417_26730 -3.9 -2.3 pyrroline-5-carboxylate reductase compare
PS417_26745 -3.8 -5.5 methionine biosynthesis protein MetW compare
PS417_12290 -3.8 -8.2 sulfite reductase compare
PS417_27195 -3.8 -2.1 N-acetylglutamate synthase compare
PS417_02000 -3.7 -16.8 glutamate synthase compare
PS417_00165 -3.7 -13.0 galactonate dehydratase conserved
PS417_25715 -3.7 -5.9 anthranilate phosphoribosyltransferase compare
PS417_25710 -3.6 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_26890 -3.5 -6.0 dihydroxy-acid dehydratase compare
PS417_00180 -3.5 -5.2 tryptophan synthase subunit alpha compare
PS417_18530 -3.5 -4.4 O-succinylhomoserine sulfhydrylase compare
PS417_23110 -3.4 -6.5 2-isopropylmalate synthase compare
PS417_20985 -3.4 -6.3 porin compare
PS417_01580 -3.3 -1.6 imidazole glycerol phosphate synthase compare
PS417_20125 -3.0 -4.2 phosphoribosylglycinamide formyltransferase compare
PS417_24155 -3.0 -4.4 ATP-binding protein compare
PS417_02415 -2.9 -6.3 phosphoserine phosphatase compare
PS417_26995 -2.8 -12.8 phosphoserine phosphatase compare
PS417_23770 -2.7 -4.6 exodeoxyribonuclease V subunit alpha compare
PS417_20160 -2.7 -5.5 cysteine synthase compare
PS417_06375 -2.5 -1.7 deoxycytidine triphosphate deaminase compare
PS417_20610 -2.3 -2.9 hypothetical protein compare
PS417_01570 -2.0 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01560 -2.0 -3.2 imidazoleglycerol-phosphate dehydratase compare
PS417_01605 -1.9 -3.1 phosphoglycerate mutase compare
PS417_02485 -1.9 -6.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23775 -1.8 -3.6 exodeoxyribonuclease V subunit beta compare
PS417_08220 -1.7 -1.3 epimerase compare
PS417_07170 -1.6 -4.2 hypothetical protein compare
PS417_00155 -1.4 -1.6 2-dehydro-3-deoxygalactonokinase compare
PS417_13510 -1.4 -2.0 polyketide cyclase compare
PS417_08205 -1.4 -4.5 acetyltransferase compare
PS417_18690 -1.4 -4.3 aromatic amino acid aminotransferase compare
PS417_21705 -1.3 -5.6 arginine N-succinyltransferase compare
PS417_01710 -1.2 -3.8 histidine utilization repressor compare
PS417_22385 -1.2 -7.9 quinolinate synthase A compare
PS417_04650 -1.1 -2.0 D-alanine--D-alanine ligase compare
PS417_21510 -1.1 -2.0 histidine kinase compare
PS417_04180 -1.1 -3.2 GntR family transcriptional regulator compare
PS417_02555 -1.1 -9.1 exoribonuclease R compare
PS417_06645 -1.1 -6.7 RNA polymerase-associated protein RapA compare
PS417_28070 -1.0 -6.3 phosphate ABC transporter ATP-binding protein compare
PS417_15780 -1.0 -2.6 membrane protein compare
PS417_08200 -1.0 -3.5 hypothetical protein compare
PS417_03310 -1.0 -5.8 carbonate dehydratase compare
PS417_27875 -1.0 -5.3 histidine kinase compare
PS417_27585 -1.0 -2.4 diaminopimelate epimerase compare
PS417_08230 -0.9 -1.5 lipopolysaccharide biosynthesis protein RfbH compare
PS417_27180 -0.9 -3.0 peroxidase compare
PS417_00170 -0.9 -7.0 glucarate transporter compare
PS417_03925 -0.9 -5.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_22840 -0.9 -2.3 tRNA-Met compare
PS417_28080 -0.9 -6.2 phosphate ABC transporter permease compare
PS417_27435 -0.9 -4.7 polyphosphate kinase compare
PS417_08245 -0.9 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21630 -0.8 -2.0 magnesium transporter compare
PS417_22445 -0.8 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_18965 -0.8 -3.3 dienelactone hydrolase compare
PS417_13490 -0.8 -1.9 hypothetical protein compare
PS417_00150 -0.8 -3.8 4,5-dioxygenase compare
PS417_08195 -0.8 -5.7 hypothetical protein compare
PS417_10220 -0.8 -3.6 hypothetical protein compare
PS417_05580 -0.8 -5.4 glycerol uptake facilitator GlpF compare
PS417_27010 -0.8 -4.7 threonine dehydratase compare
PS417_18590 -0.8 -1.8 SAM-dependent methyltransferase compare
PS417_22780 -0.8 -2.2 XRE family transcriptional regulator compare
PS417_17610 -0.8 -1.8 AsnC family transcriptional regulator compare
PS417_05575 -0.7 -4.2 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_02370 -0.7 -1.6 ADP-ribose pyrophosphatase compare
PS417_06200 -0.7 -2.8 protein-PII uridylyltransferase compare
PS417_04500 -0.7 -1.8 hypothetical protein compare
PS417_11845 -0.7 -3.8 RpiR family transcriptional regulator compare
PS417_08580 -0.7 -3.6 histidine kinase compare
PS417_16490 -0.7 -2.1 cell division protein FtsK compare
PS417_22630 -0.7 -1.4 hypothetical protein compare
PS417_26985 -0.7 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_10320 -0.7 -2.0 hypothetical protein compare
PS417_22690 -0.7 -2.6 phosphogluconate dehydratase compare
PS417_24835 -0.7 -3.3 hypothetical protein compare
PS417_23900 -0.7 -4.4 poly(A) polymerase compare
PS417_00220 -0.7 -1.5 hypothetical protein compare
PS417_21750 -0.7 -5.8 acetyl-CoA synthetase compare
PS417_01995 -0.7 -1.8 hypothetical protein compare
PS417_24615 -0.7 -1.3 hypothetical protein compare
PS417_04585 -0.7 -1.4 hypothetical protein compare
PS417_05975 -0.7 -0.8 chemotaxis protein CheW compare
PS417_05165 -0.7 -2.5 cytosol aminopeptidase compare
PS417_17490 -0.7 -1.8 ABC transporter ATP-binding protein compare
PS417_00295 -0.7 -3.7 hypothetical protein compare
PS417_20620 -0.7 -3.7 glycosyl transferase family 2 compare
PS417_27870 -0.7 -2.6 ATP-dependent DNA helicase RecG compare
PS417_19065 -0.6 -1.1 monooxygenase compare
PS417_08225 -0.6 -2.5 acetolactate synthase compare
PS417_21320 -0.6 -2.1 transcriptional regulator compare
PS417_12355 -0.6 -1.4 magnesium chelatase compare
PS417_00650 -0.6 -0.9 LysR family transcriptional regulator compare
PS417_09915 -0.6 -1.5 hypothetical protein compare
PS417_15725 -0.6 -2.8 nitrate/nitrite transporter NarK compare
PS417_14940 -0.6 -1.5 LysR family transcriptional regulator compare
PS417_06145 -0.6 -0.9 hypothetical protein compare
PS417_15775 -0.6 -2.0 short-chain dehydrogenase compare
PS417_02465 -0.6 -2.7 carbohydrate kinase compare
PS417_13800 -0.6 -1.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_26605 -0.6 -1.1 malonate decarboxylase subunit beta compare
PS417_21700 -0.6 -1.8 arginine N-succinyltransferase compare
PS417_21655 -0.6 -0.9 aspartate kinase compare
PS417_15540 -0.6 -1.2 NUDIX hydrolase compare
PS417_27865 -0.6 -2.0 LysR family transcriptional regulator compare
PS417_24620 -0.6 -1.6 hypothetical protein compare
PS417_10040 -0.6 -0.8 MFS transporter compare
PS417_14075 -0.6 -1.6 hypothetical protein compare
PS417_09930 -0.6 -1.5 hypothetical protein compare
PS417_01300 -0.6 -2.0 thioesterase compare
PS417_01825 -0.6 -2.0 chemotaxis protein compare
PS417_26755 -0.6 -0.9 nucleoside-triphosphate diphosphatase compare
PS417_15095 -0.6 -2.8 hypothetical protein compare
PS417_13870 -0.6 -1.1 hypothetical protein compare
PS417_22825 -0.6 -3.2 hypothetical protein compare
PS417_03655 -0.6 -2.3 short-chain dehydrogenase compare
PS417_15510 -0.6 -1.6 hypothetical protein compare
PS417_03300 -0.6 -2.1 alanine acetyltransferase compare
PS417_12755 -0.6 -1.8 RND transporter compare
PS417_24200 -0.6 -3.1 GCN5 family acetyltransferase compare
PS417_13075 -0.6 -1.1 hypothetical protein compare
PS417_23405 -0.5 -1.9 transcriptional regulator compare
PS417_06895 -0.5 -2.5 DNA-binding protein compare
PS417_16855 -0.5 -1.3 cation:proton antiporter compare
PS417_08730 -0.5 -1.4 cytochrome C compare
PS417_07305 -0.5 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_04685 -0.5 -3.1 histidine kinase compare
PS417_18445 -0.5 -1.0 glycerol-3-phosphatase compare
PS417_10370 -0.5 -2.2 ATPase compare
PS417_04220 -0.5 -1.1 4-carboxymuconolactone decarboxylase compare
PS417_14805 -0.5 -0.7 AraC family transcriptional regulator compare
PS417_17240 -0.5 -1.8 trigger factor compare
PS417_10505 -0.5 -1.5 hypothetical protein compare
PS417_05815 -0.5 -2.6 recombinase RecA compare
PS417_27035 -0.5 -2.6 FAD-linked oxidase compare
PS417_28230 -0.5 -1.5 transcriptional regulator compare
PS417_18780 -0.5 -1.2 flavin reductase compare
PS417_13305 -0.5 -1.1 hypothetical protein compare
PS417_28325 -0.5 -1.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_21165 -0.5 -1.8 LysR family transcriptional regulator compare
PS417_08025 -0.5 -0.6 acetylornithine aminotransferase compare
PS417_02165 -0.5 -1.7 ZapA compare
PS417_09725 -0.5 -3.4 transporter compare
PS417_11360 -0.5 -1.9 energy transducer TonB compare
PS417_09470 -0.5 -0.6 hypothetical protein compare
PS417_20665 -0.5 -2.5 hypothetical protein compare
PS417_01885 -0.5 -1.9 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
PS417_20185 -0.5 -1.5 ketosteroid isomerase compare
PS417_18885 -0.5 -1.1 GntR family transcriptional regulator compare
PS417_05840 -0.5 -2.1 LuxR family transcriptional regulator compare
PS417_08535 -0.5 -2.1 enoyl-CoA hydratase compare
PS417_02705 -0.5 -1.4 urease accessory protein UreF compare
PS417_11275 -0.5 -1.0 general secretion pathway protein GspG compare
PS417_04410 -0.5 -0.7 hypothetical protein compare
PS417_07175 -0.5 -1.4 beta-lactamase compare
PS417_27295 -0.5 -1.9 hypothetical protein compare
PS417_27715 -0.5 -1.3 Fe-S oxidoreductase compare
PS417_12175 -0.5 -1.6 peptide ABC transporter permease compare
PS417_19430 -0.5 -1.2 ureidoglycolate hydrolase compare
PS417_13165 -0.5 -1.7 peroxidase compare
PS417_11930 -0.5 -3.2 hypothetical protein compare
PS417_17980 -0.5 -1.5 ABC transporter permease compare
PS417_27155 -0.5 -0.8 aliphatic sulfonates transport ATP-binding subunit compare
PS417_05300 -0.5 -3.8 glucose dehydrogenase compare
PS417_07115 -0.5 -3.8 L-aspartate oxidase compare
PS417_18860 -0.5 -2.9 transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Galactose in Pseudomonas simiae WCS417

For carbon source D-Galactose across organisms