Experiment set1IT026 for Pseudomonas simiae WCS417

Compare to:

D-Galactose carbon source

200 most detrimental genes:

  gene name fitness t score description  
PS417_06635 +1.2 1.2 ferredoxin compare
PS417_16370 +1.0 6.2 chemotaxis protein CheY compare
PS417_07455 +1.0 3.0 glutamine amidotransferase compare
PS417_21850 +0.9 1.7 LysR family transcriptional regulator compare
PS417_06845 +0.9 2.2 lipoprotein compare
PS417_04705 +0.9 1.8 hypothetical protein compare
PS417_19825 +0.8 6.5 ATPase AAA compare
PS417_10720 +0.8 2.3 chemotaxis protein CheY compare
PS417_01915 +0.8 1.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_08435 +0.8 1.7 pilus assembly protein PilZ compare
PS417_16555 +0.8 1.7 cupin compare
PS417_19620 +0.7 1.2 hypothetical protein compare
PS417_22130 +0.7 3.8 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_03145 +0.7 1.7 acetyl-CoA acetyltransferase compare
PS417_22145 +0.7 4.8 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_10245 +0.7 1.6 hypothetical protein compare
PS417_16825 +0.7 2.3 membrane protein compare
PS417_12525 +0.7 2.9 hypothetical protein compare
PS417_23150 +0.7 2.9 Cro/Cl family transcriptional regulator compare
PS417_02280 +0.7 1.6 GlcNAc-PI de-N-acetylase compare
PS417_09420 +0.7 1.9 LysR family transcriptional regulator compare
PS417_20855 +0.7 1.6 hypothetical protein compare
PS417_06945 +0.7 1.4 membrane protein compare
PS417_19275 +0.7 0.6 hypothetical protein compare
PS417_08130 +0.7 1.9 aspartate aminotransferase compare
PS417_20080 +0.7 2.5 peptidase P60 compare
PS417_19560 +0.7 4.4 amino acid ABC transporter substrate-binding protein compare
PS417_22135 +0.7 4.4 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_07985 +0.6 1.4 AbrB family transcriptional regulator compare
PS417_19740 +0.6 2.9 flagellar biosynthesis protein flip compare
PS417_06730 +0.6 1.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_18040 +0.6 1.5 general secretion pathway protein GspN compare
PS417_16565 +0.6 2.5 secretin compare
PS417_21955 +0.6 2.7 dehydrogenase compare
PS417_14235 +0.6 1.5 hypothetical protein compare
PS417_19735 +0.6 2.6 flagellar biosynthesis protein FliQ compare
PS417_18165 +0.6 2.4 membrane protein compare
PS417_12490 +0.6 1.5 autotransporter adhesin compare
PS417_03725 +0.6 2.0 acyltransferase compare
PS417_00045 +0.6 2.3 glycerol acyltransferase compare
PS417_26615 +0.6 3.0 triphosphoribosyl-dephospho-CoA synthase compare
PS417_10675 +0.6 1.0 TetR family transcriptional regulator compare
PS417_07845 +0.6 1.3 transcriptional regulator compare
PS417_26155 +0.6 1.8 hypothetical protein compare
PS417_17685 +0.6 2.6 allantoate amidohydrolase compare
PS417_28265 +0.6 1.4 pyridoxamine kinase compare
PS417_13730 +0.6 1.8 hypothetical protein compare
PS417_14810 +0.6 1.3 Fosmidomycin resistance protein compare
PS417_22550 +0.6 2.0 ATP-binding protein compare
PS417_13090 +0.5 1.7 dienelactone hydrolase compare
PS417_22140 +0.5 4.2 glucose/xylose ABC transporter, permease component 2 (from data) compare
PS417_04960 +0.5 1.5 hypothetical protein compare
PS417_14605 +0.5 2.1 adenylate kinase compare
PS417_18370 +0.5 1.6 hypothetical protein compare
PS417_27945 +0.5 0.7 type VI secretion protein ImpA compare
PS417_27135 +0.5 0.7 glutamine synthetase compare
PS417_02745 +0.5 1.0 FMN-dependent NADH-azoreductase compare
PS417_00845 +0.5 1.5 transcriptional regulator compare
PS417_14315 +0.5 1.9 2,5-dioxovalerate dehydrogenase compare
PS417_12655 +0.5 2.3 methionine aminopeptidase compare
PS417_26145 +0.5 2.2 hypothetical protein compare
PS417_09865 +0.5 1.0 hypothetical protein compare
PS417_01945 +0.5 1.3 nuclease compare
PS417_20650 +0.5 4.1 hypothetical protein compare
PS417_19730 +0.5 1.9 flagellar biosynthesis protein FliR compare
PS417_03525 +0.5 1.1 hypothetical protein compare
PS417_26335 +0.5 1.2 BetI family transcriptional regulator compare
PS417_21430 +0.5 1.6 3-oxoacyl-ACP synthase compare
PS417_19600 +0.5 0.7 exonuclease compare
PS417_06445 +0.5 1.5 iron-siderophore ABC transporter permease compare
PS417_12735 +0.5 1.1 peroxidase compare
PS417_19285 +0.5 1.2 ankyrin compare
PS417_16395 +0.5 1.8 arsenate reductase compare
PS417_23160 +0.5 1.4 50S rRNA methyltransferase compare
PS417_19520 +0.5 1.6 transcriptional regulator compare
PS417_04535 +0.5 1.8 lysine transporter LysE compare
PS417_02035 +0.5 2.2 3-ketoacyl-ACP reductase compare
PS417_15325 +0.5 0.9 type VI secretion protein compare
PS417_10390 +0.5 1.8 RNA polymerase subunit sigma24 compare
PS417_01645 +0.5 1.6 cupin compare
PS417_03780 +0.5 1.8 general secretion pathway protein GspH compare
PS417_27555 +0.5 1.7 DNA-binding protein compare
PS417_14815 +0.5 2.2 diguanylate cyclase compare
PS417_02385 +0.5 1.3 esterase compare
PS417_10810 +0.5 1.3 hypothetical protein compare
PS417_23460 +0.5 1.9 LysR family transcriptional regulator compare
PS417_26260 +0.5 1.3 hypothetical protein compare
PS417_17795 +0.4 1.2 ABC transporter permease compare
PS417_03920 +0.4 2.0 dephospho-CoA kinase compare
PS417_18475 +0.4 1.5 Pyrrolidone-carboxylate peptidase compare
PS417_05570 +0.4 2.4 DeoR faimly transcriptional regulator compare
PS417_24370 +0.4 0.8 (2Fe-2S)-binding protein compare
PS417_19755 +0.4 1.0 flagellar motor switch protein FliM compare
PS417_12405 +0.4 2.2 DNA-binding protein compare
PS417_17780 +0.4 0.9 Ais protein compare
PS417_26265 +0.4 1.2 hypothetical protein compare
PS417_19760 +0.4 2.3 flagellar basal body protein FliL compare
PS417_19820 +0.4 1.9 histidine kinase compare
PS417_11830 +0.4 1.1 membrane protein compare
PS417_11760 +0.4 1.4 Fis family transcriptional regulator compare
PS417_26125 +0.4 0.9 glutathione S-transferase compare
PS417_15495 +0.4 2.4 FAD-dependent oxidoreductase compare
PS417_13865 +0.4 1.6 bestrophin compare
PS417_22705 +0.4 1.4 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_06125 +0.4 1.8 hypothetical protein compare
PS417_11810 +0.4 1.5 oxidoreductase compare
PS417_06935 +0.4 2.1 hydroxymethylglutaryl-CoA lyase compare
PS417_04170 +0.4 1.9 stringent starvation protein A compare
PS417_23105 +0.4 1.1 hypothetical protein compare
PS417_09305 +0.4 1.3 hypothetical protein compare
PS417_23950 +0.4 1.0 polynucleotide phosphorylase/polyadenylase compare
PS417_05555 +0.4 1.4 amino acid ABC transporter permease compare
PS417_06095 +0.4 1.0 energy transducer TonB compare
PS417_05820 +0.4 1.3 recombinase RecX compare
PS417_22610 +0.4 2.4 pilus assembly protein PilZ compare
PS417_02100 +0.4 2.4 membrane protein compare
PS417_10910 +0.4 1.6 FAD-dependent oxidoreductase compare
PS417_17405 +0.4 1.0 AraC family transcriptional regulator compare
PS417_09695 +0.4 0.6 hydrolase compare
PS417_11185 +0.4 1.1 dimethylallyltransferase compare
PS417_01130 +0.4 1.6 L-glyceraldehyde 3-phosphate reductase compare
PS417_15975 +0.4 0.8 glutamate carboxypeptidase compare
PS417_09045 +0.4 1.4 histidine kinase compare
PS417_01970 +0.4 1.8 pilus assembly protein compare
PS417_24560 +0.4 1.1 ferrous iron transporter compare
PS417_25155 +0.4 1.0 hypothetical protein compare
PS417_04185 +0.4 0.9 hypothetical protein compare
PS417_24885 +0.4 1.2 transcriptional regulator compare
PS417_10995 +0.4 1.2 GntR family transcriptional regulator compare
PS417_03100 +0.4 0.5 pilus assembly protein compare
PS417_17325 +0.4 1.7 dihydropyrimidine dehydrogenase compare
PS417_02175 +0.4 1.7 transcriptional regulator compare
PS417_23080 +0.4 1.0 sugar ABC transporter ATPase compare
PS417_19095 +0.4 0.6 hypothetical protein compare
PS417_22765 +0.4 1.7 InaA protein compare
PS417_03790 +0.4 1.5 pilus assembly protein PilW compare
PS417_22680 +0.4 1.7 chemotaxis protein CheY compare
PS417_08185 +0.4 2.1 glycosyl transferase compare
PS417_01435 +0.4 0.7 hypothetical protein compare
PS417_10985 +0.4 0.6 NADH:flavin oxidoreductase compare
PS417_14065 +0.4 2.6 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_09730 +0.4 1.2 adenylylsulfate kinase compare
PS417_11545 +0.4 1.5 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_14105 +0.4 1.3 6-O-methylguanine DNA methyltransferase compare
PS417_01795 +0.4 2.6 glucosyltransferase MdoH compare
PS417_09635 +0.4 2.4 mannose-1-phosphate guanylyltransferase compare
PS417_21480 +0.4 0.7 23S rRNA pseudouridylate synthase compare
PS417_14985 +0.4 1.6 Fe-S protein compare
PS417_12985 +0.4 1.6 DNA-binding protein compare
PS417_27705 +0.4 1.0 amino acid dehydrogenase compare
PS417_17445 +0.4 1.7 sulfur oxidation protein SoxZ compare
PS417_22900 +0.4 2.4 cytochrome C oxidase subunit II compare
PS417_16175 +0.4 1.6 porin compare
PS417_00545 +0.4 1.4 hypothetical protein compare
PS417_16885 +0.4 1.3 hypothetical protein compare
PS417_25170 +0.4 2.1 FAD-binding protein compare
PS417_09025 +0.4 2.3 alpha/beta hydrolase compare
PS417_12805 +0.4 2.6 glycogen branching protein compare
PS417_22675 +0.4 2.3 histidine kinase compare
PS417_19725 +0.4 2.1 flagellar biosynthesis protein FlhB compare
PS417_15215 +0.4 1.0 protein activator of alkane oxidation PraA compare
PS417_11865 +0.4 1.3 xylose isomerase compare
PS417_04055 +0.4 1.7 peptide transporter compare
PS417_08090 +0.4 0.5 3-oxoacyl-ACP reductase compare
PS417_07945 +0.4 0.9 hypothetical protein compare
PS417_26050 +0.4 1.4 response regulator compare
PS417_10520 +0.4 1.8 succinyl-CoA:3-ketoacid-CoA transferase compare
PS417_12915 +0.4 1.8 DNA-binding protein compare
PS417_21565 +0.3 1.0 flagellar basal body rod protein FlgC compare
PS417_14245 +0.3 1.2 hypothetical protein compare
PS417_15880 +0.3 1.2 GNAT family acetyltransferase compare
PS417_09150 +0.3 1.3 energy transducer TonB compare
PS417_24085 +0.3 1.0 protein RnfH compare
PS417_12265 +0.3 1.7 ACP phosphodiesterase compare
PS417_02115 +0.3 1.9 acyltransferase compare
PS417_26945 +0.3 1.9 sulfate ABC transporter ATP-binding protein compare
PS417_12030 +0.3 1.1 LysR family transcriptional regulator compare
PS417_26370 +0.3 2.0 RNA helicase compare
PS417_19535 +0.3 1.7 dihydroneopterin aldolase compare
PS417_04580 +0.3 1.9 hypothetical protein compare
PS417_08820 +0.3 1.8 transposase compare
PS417_16255 +0.3 1.7 RNA polymerase sigma factor compare
PS417_18000 +0.3 1.9 hypothetical protein compare
PS417_12540 +0.3 1.3 hypothetical protein compare
PS417_27475 +0.3 0.9 membrane protein compare
PS417_19240 +0.3 1.5 peptidase M42 compare
PS417_24555 +0.3 1.8 polyribonucleotide nucleotidyltransferase compare
PS417_07070 +0.3 1.9 membrane protein compare
PS417_06030 +0.3 1.4 hypothetical protein compare
PS417_07700 +0.3 0.9 chromosome partitioning protein ParA compare
PS417_03190 +0.3 1.4 antibiotic biosynthesis monooxygenase compare
PS417_22700 +0.3 1.5 RNA polymerase subunit sigma-24 compare
PS417_27085 +0.3 1.1 AraC family transcriptional regulator compare
PS417_20340 +0.3 0.8 hypothetical protein compare
PS417_04230 +0.3 1.3 lipoprotein compare
PS417_01900 +0.3 1.4 poly(3-hydroxyalkanoate) depolymerase compare
PS417_16870 +0.3 1.3 short-chain dehydrogenase compare
PS417_27910 +0.3 1.5 PppA compare
PS417_09710 +0.3 2.0 dehydrogenase compare
PS417_14140 +0.3 1.1 membrane protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Galactose in Pseudomonas simiae WCS417

For carbon source D-Galactose across organisms