Experiment set1IT026 for Pseudomonas fluorescens SBW25

Compare to:

L-Arabinose carbon source

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS29480 +4.2 16.9 exodeoxyribonuclease III compare
PFLU_RS11620 +3.8 26.6 FadR family transcriptional regulator compare
PFLU_RS00435 +3.2 18.4 PAS domain-containing protein compare
PFLU_RS00460 +3.0 21.0 glutamate/aspartate:proton symporter GltP compare
PFLU_RS29810 +2.9 18.8 LysR family transcriptional regulator compare
PFLU_RS14715 +2.9 10.2 protein-glutamate O-methyltransferase CheR compare
PFLU_RS25220 +2.8 15.5 ubiquinol oxidase subunit II compare
PFLU_RS25200 +2.8 15.2 protoheme IX farnesyltransferase compare
PFLU_RS29780 +2.8 12.3 acyl-CoA thioesterase compare
PFLU_RS25210 +2.6 9.1 cytochrome o ubiquinol oxidase subunit III compare
PFLU_RS25215 +2.6 17.0 cytochrome o ubiquinol oxidase subunit I compare
PFLU_RS25865 +2.5 2.7 YhbY family RNA-binding protein compare
PFLU_RS23325 +2.1 11.8 GlxA family transcriptional regulator compare
PFLU_RS01875 +2.1 3.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
PFLU_RS29505 +2.0 7.0 DNA-directed RNA polymerase subunit omega compare
PFLU_RS24175 +2.0 9.9 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
PFLU_RS25205 +2.0 5.5 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS22535 +1.9 13.9 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS26955 +1.9 10.9 sugar nucleotide-binding protein compare
PFLU_RS17130 +1.8 4.7 protein BatD compare
PFLU_RS23585 +1.8 10.1 GntP family permease compare
PFLU_RS00385 +1.8 3.4 homoserine kinase compare
PFLU_RS06310 +1.7 5.6 sigma E protease regulator RseP compare
PFLU_RS13085 +1.6 3.2 DUF1315 family protein compare
PFLU_RS21825 +1.6 7.3 ketoacyl-ACP synthase III compare
PFLU_RS04020 +1.6 10.7 PTS fructose-like transporter subunit IIB compare
PFLU_RS02575 +1.6 8.9 GTPase HflX compare
PFLU_RS29105 +1.5 9.6 DedA family protein compare
PFLU_RS00040 +1.5 11.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS07630 +1.5 11.8 transglycosylase SLT domain-containing protein compare
PFLU_RS01315 +1.5 3.9 Hsp33 family molecular chaperone HslO compare
PFLU_RS17105 +1.5 6.7 MoxR family ATPase compare
PFLU_RS17115 +1.5 6.4 DUF4381 domain-containing protein compare
PFLU_RS24690 +1.5 8.0 membrane-bound lytic murein transglycosylase MltF compare
PFLU_RS00410 +1.5 8.2 cytochrome c4 compare
PFLU_RS17615 +1.4 1.6 DeoR/GlpR transcriptional regulator compare
PFLU_RS02340 +1.4 11.8 TonB-dependent receptor compare
PFLU_RS03035 +1.4 2.3 50S ribosomal protein L11 methyltransferase compare
PFLU_RS25790 +1.4 5.3 polyribonucleotide nucleotidyltransferase compare
PFLU_RS26440 +1.4 2.4 acyl carrier protein compare
PFLU_RS04485 +1.3 9.3 uracil phosphoribosyltransferase compare
PFLU_RS17125 +1.3 6.2 VWA domain-containing protein compare
PFLU_RS01890 +1.3 3.3 twin-arginine translocase TatA/TatE family subunit compare
PFLU_RS17110 +1.3 2.9 DUF58 domain-containing protein compare
PFLU_RS00065 +1.3 6.5 lysophospholipid acyltransferase compare
PFLU_RS30790 +1.3 0.8 hypothetical protein compare
PFLU_RS05380 +1.3 4.4 group 1 truncated hemoglobin compare
PFLU_RS06815 +1.3 6.7 TetR family transcriptional regulator compare
PFLU_RS01660 +1.2 2.4 rhodanese-like domain-containing protein compare
PFLU_RS22100 +1.2 4.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PFLU_RS04205 +1.2 6.0 cytochrome c1 compare
PFLU_RS29560 +1.2 1.2 hypothetical protein compare
PFLU_RS30555 +1.2 1.3 hypothetical protein compare
PFLU_RS01880 +1.2 4.9 twin-arginine translocase subunit TatC compare
PFLU_RS02585 +1.2 6.0 protease modulator HflC compare
PFLU_RS24020 +1.2 6.1 RDD family protein compare
PFLU_RS05875 +1.2 2.7 lysozyme compare
PFLU_RS17120 +1.1 4.8 VWA domain-containing protein compare
PFLU_RS31075 +1.1 3.9 hypothetical protein compare
PFLU_RS00360 +1.1 4.1 hypothetical protein compare
PFLU_RS12675 +1.1 1.8 DUF2946 domain-containing protein compare
PFLU_RS22425 +1.1 0.5 YbaB/EbfC family nucleoid-associated protein compare
PFLU_RS16510 +1.1 1.5 thiol-disulfide oxidoreductase DCC family protein compare
PFLU_RS21965 +1.1 9.0 transporter compare
PFLU_RS28395 +1.1 4.6 DUF4426 domain-containing protein compare
PFLU_RS23100 +1.1 2.7 ribonuclease E compare
PFLU_RS31045 +1.1 5.5 ribosome modulation factor compare
PFLU_RS01885 +1.1 2.7 Sec-independent protein translocase subunit TatB compare
PFLU_RS19550 +1.1 1.8 ABC transporter ATP-binding protein compare
PFLU_RS23220 +1.1 1.6 tRNA-Arg compare
PFLU_RS23315 +1.1 5.0 aspartate aminotransferase family protein compare
PFLU_RS23350 +1.1 6.8 ABC transporter substrate-binding protein compare
PFLU_RS08620 +1.0 2.3 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS16075 +1.0 1.7 aldehyde dehydrogenase compare
PFLU_RS23345 +1.0 6.5 ABC transporter permease compare
PFLU_RS11490 +1.0 2.8 ABC transporter ATP-binding protein compare
PFLU_RS19935 +1.0 2.7 type II secretion system protein GspF compare
PFLU_RS21690 +1.0 1.1 DNA-binding protein compare
PFLU_RS26935 +1.0 2.1 ABC transporter ATP-binding protein compare
PFLU_RS04165 +1.0 5.0 cell division protein ZapE compare
PFLU_RS23445 +1.0 2.0 DUF1003 domain-containing protein compare
PFLU_RS02215 +1.0 2.3 hypothetical protein compare
PFLU_RS31590 +1.0 1.2 hypothetical protein compare
PFLU_RS20355 +1.0 1.0 D-ribose pyranase compare
PFLU_RS00850 +1.0 1.8 hypothetical protein compare
PFLU_RS21740 +1.0 4.4 Hpt domain-containing protein compare
PFLU_RS21935 +1.0 7.0 sensor histidine kinase compare
PFLU_RS12800 +1.0 1.8 amino acid ABC transporter ATP-binding protein compare
PFLU_RS12840 +1.0 2.0 3-hydroxybutyrate dehydrogenase compare
PFLU_RS00390 +1.0 3.3 DUF2782 domain-containing protein compare
PFLU_RS04135 +0.9 5.5 HAMP domain-containing histidine kinase compare
PFLU_RS02580 +0.9 6.1 FtsH protease activity modulator HflK compare
PFLU_RS01390 +0.9 3.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS23340 +0.9 7.3 ABC transporter permease compare
PFLU_RS16945 +0.9 2.0 MmgE/PrpD family protein compare
PFLU_RS09005 +0.9 6.8 molecular chaperone HtpG compare
PFLU_RS15280 +0.9 1.4 hypothetical protein compare
PFLU_RS29765 +0.9 7.0 ABC transporter permease subunit compare
PFLU_RS29755 +0.9 5.9 phosphate ABC transporter ATP-binding protein compare
PFLU_RS24980 +0.9 1.6 purine-binding chemotaxis protein CheW compare
PFLU_RS10135 +0.9 2.9 hypothetical protein compare
PFLU_RS26835 +0.9 1.8 exodeoxyribonuclease VII small subunit compare
PFLU_RS29545 +0.9 5.5 hydrogen peroxide-inducible genes activator compare
PFLU_RS05475 +0.9 6.2 amino acid permease compare
PFLU_RS08990 +0.9 1.2 hypothetical protein compare
PFLU_RS29315 +0.9 1.3 hypothetical protein compare
PFLU_RS04010 +0.9 3.8 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS15265 +0.9 1.5 EAL domain-containing response regulator compare
PFLU_RS08670 +0.8 3.2 heme lyase CcmF/NrfE family subunit compare
PFLU_RS24895 +0.8 0.7 preprotein translocase subunit YajC compare
PFLU_RS01070 +0.8 2.2 alpha/beta hydrolase compare
PFLU_RS17135 +0.8 2.8 exonuclease subunit SbcD compare
PFLU_RS29955 +0.8 2.2 RNA polymerase-binding protein DksA compare
PFLU_RS22385 +0.8 5.3 oxygen-independent coproporphyrinogen III oxidase compare
PFLU_RS09255 +0.8 3.8 recombination-associated protein RdgC compare
PFLU_RS05040 +0.8 1.5 DUF1120 domain-containing protein compare
PFLU_RS22605 +0.8 4.1 mechanosensitive ion channel compare
PFLU_RS08795 +0.8 1.7 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN compare
PFLU_RS03285 +0.8 5.3 adenosine deaminase compare
PFLU_RS23890 +0.8 1.9 pseudouridine synthase compare
PFLU_RS15800 +0.8 2.4 immunity 49 family protein compare
PFLU_RS23590 +0.8 2.0 gluconokinase compare
PFLU_RS04490 +0.8 2.4 hypoxanthine-guanine phosphoribosyltransferase compare
PFLU_RS05655 +0.8 1.6 DeoR/GlpR family transcriptional regulator compare
PFLU_RS31820 +0.8 2.3 MFS sugar transporter compare
PFLU_RS31305 +0.8 2.8 cell wall hydrolase compare
PFLU_RS12905 +0.8 4.7 transglycosylase SLT domain-containing protein compare
PFLU_RS23430 +0.8 3.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS14005 +0.8 0.5 hypothetical protein compare
PFLU_RS00430 +0.8 4.9 N-acetylmuramoyl-L-alanine amidase compare
PFLU_RS04480 +0.8 5.5 uracil-xanthine permease compare
PFLU_RS26945 +0.8 3.7 DUF3299 domain-containing protein compare
PFLU_RS04200 +0.8 4.2 cytochrome bc complex cytochrome b subunit compare
PFLU_RS07690 +0.8 3.3 helix-turn-helix transcriptional regulator compare
PFLU_RS10200 +0.8 2.8 DUF4174 domain-containing protein compare
PFLU_RS13065 +0.8 2.9 ser/threonine protein phosphatase compare
PFLU_RS26565 +0.8 0.6 rRNA maturation RNase YbeY compare
PFLU_RS20445 +0.8 3.0 hypothetical protein compare
PFLU_RS22390 +0.8 2.3 hypothetical protein compare
PFLU_RS08675 +0.8 2.2 DsbE family thiol:disulfide interchange protein compare
PFLU_RS29385 +0.8 5.9 AsnC family transcriptional regulator compare
PFLU_RS21980 +0.8 1.2 MarR family transcriptional regulator compare
PFLU_RS12950 +0.8 3.2 hypothetical protein compare
PFLU_RS11950 +0.8 3.1 YbjN domain-containing protein compare
PFLU_RS19995 +0.8 2.1 Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB compare
PFLU_RS26500 +0.8 4.0 Lrp/AsnC family transcriptional regulator compare
PFLU_RS17690 +0.8 2.3 GNAT family N-acetyltransferase compare
PFLU_RS17570 +0.7 2.3 DNA polymerase Y family protein compare
PFLU_RS12765 +0.7 2.5 histidine phosphatase family protein compare
PFLU_RS14155 +0.7 1.3 hypothetical protein compare
PFLU_RS11965 +0.7 2.2 LysR family transcriptional regulator compare
PFLU_RS24930 +0.7 1.6 hypothetical protein compare
PFLU_RS28570 +0.7 1.9 DUF2868 domain-containing protein compare
PFLU_RS16710 +0.7 1.6 nitrite reductase small subunit NirD compare
PFLU_RS26515 +0.7 5.8 AMP nucleosidase compare
PFLU_RS22495 +0.7 3.6 GntR family transcriptional regulator compare
PFLU_RS27300 +0.7 4.4 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS09480 +0.7 1.5 hypothetical protein compare
PFLU_RS06765 +0.7 1.5 4-carboxymuconolactone decarboxylase compare
PFLU_RS12260 +0.7 1.3 hypothetical protein compare
PFLU_RS28815 +0.7 2.1 transporter compare
PFLU_RS29045 +0.7 1.3 FadR family transcriptional regulator compare
PFLU_RS31530 +0.7 0.7 transposase compare
PFLU_RS08560 +0.7 1.7 response regulator compare
PFLU_RS28180 +0.7 3.3 DEAD/DEAH box helicase compare
PFLU_RS19445 +0.7 2.4 FadR family transcriptional regulator compare
PFLU_RS31740 +0.7 1.1 hypothetical protein compare
PFLU_RS26455 +0.7 1.7 3'-5' exonuclease compare
PFLU_RS13375 +0.7 1.4 carbohydrate kinase compare
PFLU_RS23045 +0.7 3.6 beta-ketoacyl-ACP synthase II compare
PFLU_RS30350 +0.7 2.2 hypothetical protein compare
PFLU_RS04530 +0.7 1.6 hypothetical protein compare
PFLU_RS18185 +0.7 2.3 SDR family oxidoreductase compare
PFLU_RS11900 +0.7 2.2 type II secretion system protein GspF compare
PFLU_RS00960 +0.7 2.3 sulfate ABC transporter ATP-binding protein compare
PFLU_RS30345 +0.7 1.1 DUF2559 family protein compare
PFLU_RS09220 +0.7 3.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS09100 +0.7 2.6 HAMP domain-containing protein compare
PFLU_RS25875 +0.7 2.1 transcription elongation factor GreA compare
PFLU_RS30030 +0.7 0.7 membrane protein compare
PFLU_RS05315 +0.7 2.3 GntR family transcriptional regulator compare
PFLU_RS08535 +0.7 4.7 response regulator compare
PFLU_RS00870 +0.7 1.1 hypothetical protein compare
PFLU_RS04140 +0.7 1.8 response regulator transcription factor compare
PFLU_RS21630 +0.7 3.5 flagellar motor protein MotD compare
PFLU_RS28370 +0.7 3.2 YggS family pyridoxal phosphate-dependent enzyme compare
PFLU_RS21015 +0.7 1.6 alpha/beta fold hydrolase compare
PFLU_RS22355 +0.7 2.9 cytochrome-c oxidase, cbb3-type subunit III compare
PFLU_RS08665 +0.7 1.8 cytochrome c maturation protein CcmE compare
PFLU_RS23675 +0.7 0.6 hypothetical protein compare
PFLU_RS00860 +0.6 3.6 ATP-binding protein compare
PFLU_RS28780 +0.6 4.5 aspartate aminotransferase family protein compare
PFLU_RS21925 +0.6 2.2 YecA family protein compare
PFLU_RS19050 +0.6 2.2 spore coat protein U domain-containing protein compare
PFLU_RS24635 +0.6 2.9 L,D-transpeptidase family protein compare
PFLU_RS14670 +0.6 2.4 GNAT family N-acetyltransferase compare
PFLU_RS30480 +0.6 2.3 hypothetical protein compare
PFLU_RS11675 +0.6 2.6 glutathione S-transferase family protein compare
PFLU_RS10295 +0.6 2.4 HAD-IA family hydrolase compare
PFLU_RS24815 +0.6 3.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source L-Arabinose in Pseudomonas fluorescens SBW25

For carbon source L-Arabinose across organisms