Experiment set1IT025 for Pseudomonas simiae WCS417

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -6.3 -5.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_09725 -5.4 -10.9 transporter compare
PS417_04415 -5.4 -12.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18595 -5.4 -6.7 3-isopropylmalate dehydratase compare
PS417_27795 -5.3 -2.1 orotate phosphoribosyltransferase compare
PS417_18560 -5.2 -10.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01575 -5.2 -9.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01565 -5.0 -7.8 imidazole glycerol phosphate synthase compare
PS417_27040 -5.0 -6.5 3-phosphoglycerate dehydrogenase compare
PS417_12855 -5.0 -6.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02510 -4.8 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23805 -4.8 -8.6 acetolactate synthase 3 regulatory subunit compare
PS417_18585 -4.8 -9.1 3-isopropylmalate dehydrogenase compare
PS417_23800 -4.7 -15.9 ketol-acid reductoisomerase compare
PS417_23545 -4.7 -6.2 gamma-glutamyl kinase compare
PS417_02005 -4.6 -14.5 glutamate synthase compare
PS417_25720 -4.6 -10.6 anthranilate synthase component II compare
PS417_25725 -4.5 -15.6 anthranilate synthase component I compare
PS417_16465 -4.5 -16.1 sirohydrochlorin ferrochelatase compare
PS417_26740 -4.4 -12.4 homoserine acetyltransferase compare
PS417_24745 -4.2 -5.7 gamma-glutamyl phosphate reductase compare
PS417_04420 -4.2 -12.7 histidinol dehydrogenase compare
PS417_12290 -4.2 -11.6 sulfite reductase compare
PS417_26745 -4.2 -7.6 methionine biosynthesis protein MetW compare
PS417_01850 -4.1 -12.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23810 -4.1 -12.2 acetolactate synthase 3 catalytic subunit compare
PS417_26730 -4.1 -2.3 pyrroline-5-carboxylate reductase compare
PS417_18600 -4.0 -6.4 isopropylmalate isomerase compare
PS417_00185 -4.0 -6.9 tryptophan synthase subunit beta compare
PS417_25710 -3.8 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_02000 -3.8 -18.9 glutamate synthase compare
PS417_22690 -3.5 -8.5 phosphogluconate dehydratase compare
PS417_25715 -3.5 -5.7 anthranilate phosphoribosyltransferase compare
PS417_23110 -3.5 -8.6 2-isopropylmalate synthase compare
PS417_05595 -3.5 -8.1 ornithine carbamoyltransferase compare
PS417_18530 -3.4 -5.7 O-succinylhomoserine sulfhydrylase compare
PS417_01605 -3.4 -3.0 phosphoglycerate mutase compare
PS417_23995 -3.3 -1.8 preprotein translocase subunit SecG compare
PS417_21035 -3.3 -16.0 multidrug transporter compare
PS417_06375 -3.3 -1.8 deoxycytidine triphosphate deaminase compare
PS417_00180 -3.2 -4.2 tryptophan synthase subunit alpha compare
PS417_26890 -3.1 -7.0 dihydroxy-acid dehydratase compare
PS417_12690 -3.1 -8.6 xylulose kinase conserved
PS417_01580 -3.0 -2.5 imidazole glycerol phosphate synthase compare
PS417_10950 -3.0 -11.3 AraC family transcriptional regulator conserved
PS417_10945 -2.9 -8.8 Xylose isomerase (EC 5.3.1.5) (from data) conserved
PS417_24155 -2.7 -4.5 ATP-binding protein compare
PS417_02415 -2.5 -4.8 phosphoserine phosphatase compare
PS417_20985 -2.5 -6.2 porin compare
PS417_26040 -2.4 -5.0 malate synthase compare
PS417_27195 -2.4 -2.8 N-acetylglutamate synthase compare
PS417_26985 -2.3 -6.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08125 -2.3 -2.3 prephenate dehydratase compare
PS417_23770 -2.2 -4.4 exodeoxyribonuclease V subunit alpha compare
PS417_20160 -2.2 -3.6 cysteine synthase compare
PS417_28220 -2.1 -4.2 LysR family transcriptional regulator compare
PS417_01570 -2.0 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_09705 -2.0 -3.7 hypothetical protein compare
PS417_22680 -1.9 -6.9 chemotaxis protein CheY compare
PS417_04270 -1.9 -10.2 ribonuclease G compare
PS417_14940 -1.8 -3.4 LysR family transcriptional regulator compare
PS417_20125 -1.8 -4.3 phosphoribosylglycinamide formyltransferase compare
PS417_22145 -1.8 -7.4 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) conserved
PS417_22140 -1.8 -9.8 glucose/xylose ABC transporter, permease component 2 (from data) conserved
PS417_22130 -1.7 -7.3 glucose/xylose ABC transporter, ATPase component (from data) conserved
PS417_22135 -1.6 -9.3 glucose/xylose ABC transporter, permease component 1 (from data) conserved
PS417_01560 -1.6 -3.1 imidazoleglycerol-phosphate dehydratase compare
PS417_23775 -1.6 -2.2 exodeoxyribonuclease V subunit beta compare
PS417_27875 -1.4 -7.9 histidine kinase compare
PS417_21655 -1.4 -2.5 aspartate kinase compare
PS417_22445 -1.4 -5.4 ATP-dependent DNA helicase RuvB compare
PS417_12310 -1.4 -8.5 methionine synthase compare
PS417_26995 -1.4 -8.5 phosphoserine phosphatase compare
PS417_04375 -1.3 -3.8 ABC transporter ATP-binding protein compare
PS417_26990 -1.3 -2.1 RNA pyrophosphohydrolase compare
PS417_22675 -1.3 -8.1 histidine kinase compare
PS417_09710 -1.2 -2.2 dehydrogenase compare
PS417_04595 -1.2 -3.7 cell division protein MraZ compare
PS417_20610 -1.2 -2.3 hypothetical protein compare
PS417_04380 -1.2 -1.9 ABC transporter permease compare
PS417_01710 -1.2 -4.5 histidine utilization repressor compare
PS417_00650 -1.1 -1.4 LysR family transcriptional regulator compare
PS417_09700 -1.1 -2.8 transaldolase compare
PS417_09720 -1.1 -2.0 methyltransferase compare
PS417_05165 -1.1 -2.5 cytosol aminopeptidase compare
PS417_23900 -1.1 -7.0 poly(A) polymerase compare
PS417_27815 -1.1 -2.3 hypothetical protein compare
PS417_27835 -1.1 -7.1 endoribonuclease compare
PS417_19335 -1.0 -3.6 isochorismatase compare
PS417_11440 -1.0 -1.9 hypothetical protein compare
PS417_27305 -1.0 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
PS417_28070 -1.0 -4.3 phosphate ABC transporter ATP-binding protein compare
PS417_16570 -1.0 -6.5 isocitrate lyase compare
PS417_24620 -0.9 -2.6 hypothetical protein compare
PS417_27435 -0.9 -4.6 polyphosphate kinase compare
PS417_07170 -0.9 -3.7 hypothetical protein compare
PS417_11040 -0.9 -6.0 aldose epimerase compare
PS417_16990 -0.9 -5.3 acyl-CoA dehydrogenase compare
PS417_02225 -0.9 -2.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_26510 -0.9 -6.0 5,10-methylenetetrahydrofolate reductase compare
PS417_16490 -0.9 -2.3 cell division protein FtsK compare
PS417_08200 -0.9 -3.2 hypothetical protein compare
PS417_08155 -0.9 -1.2 integration host factor subunit beta compare
PS417_23375 -0.9 -2.4 cytochrome C oxidase compare
PS417_13800 -0.9 -1.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_08225 -0.8 -4.0 acetolactate synthase compare
PS417_17505 -0.8 -2.2 LuxR family transcriptional regulator compare
PS417_21705 -0.8 -4.0 arginine N-succinyltransferase compare
PS417_28020 -0.8 -3.2 chorismate--pyruvate lyase compare
PS417_21425 -0.8 -1.8 4-amino-4-deoxychorismate lyase compare
PS417_06200 -0.8 -3.6 protein-PII uridylyltransferase compare
PS417_08205 -0.8 -3.7 acetyltransferase compare
PS417_17455 -0.8 -3.8 cytochrome C compare
PS417_13510 -0.8 -1.3 polyketide cyclase compare
PS417_17490 -0.8 -2.3 ABC transporter ATP-binding protein compare
PS417_08730 -0.8 -1.9 cytochrome C compare
PS417_15895 -0.8 -2.0 iron dicitrate transport regulator FecR compare
PS417_22115 -0.8 -3.0 transcriptional regulator compare
PS417_08195 -0.8 -4.6 hypothetical protein compare
PS417_16005 -0.7 -2.0 ATPase compare
PS417_24615 -0.7 -1.2 hypothetical protein compare
PS417_27010 -0.7 -4.6 threonine dehydratase compare
PS417_05570 -0.7 -3.6 DeoR faimly transcriptional regulator compare
PS417_13075 -0.7 -1.6 hypothetical protein compare
PS417_17470 -0.7 -2.8 LuxR family transcriptional regulator compare
PS417_28080 -0.7 -5.4 phosphate ABC transporter permease compare
PS417_04410 -0.7 -0.8 hypothetical protein compare
PS417_04650 -0.7 -1.3 D-alanine--D-alanine ligase compare
PS417_04585 -0.7 -1.3 hypothetical protein compare
PS417_00220 -0.7 -1.3 hypothetical protein compare
PS417_21125 -0.7 -3.9 phosphoadenosine phosphosulfate reductase compare
PS417_15885 -0.7 -1.4 GCN5 family acetyltransferase compare
PS417_28075 -0.7 -3.5 phosphate ABC transporter permease compare
PS417_09695 -0.7 -1.1 hydrolase compare
PS417_03925 -0.7 -4.2 nicotinate-nucleotide pyrophosphorylase compare
PS417_07615 -0.7 -3.3 TetR family transcriptional regulator compare
PS417_09235 -0.7 -1.0 molecular chaperone compare
PS417_28280 -0.7 -2.5 hypothetical protein compare
PS417_17240 -0.7 -2.9 trigger factor compare
PS417_24765 -0.7 -2.5 membrane protein compare
PS417_01995 -0.7 -1.8 hypothetical protein compare
PS417_21695 -0.6 -2.1 succinylglutamate-semialdehyde dehydrogenase compare
PS417_23725 -0.6 -1.7 methylmalonate-semialdehyde dehydrogenase compare
PS417_22685 -0.6 -4.6 Glucokinase (EC 2.7.1.2) (from data) compare
PS417_00045 -0.6 -2.0 glycerol acyltransferase compare
PS417_25940 -0.6 -3.2 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_17435 -0.6 -4.0 dehydrogenase compare
PS417_24100 -0.6 -3.4 transcriptional regulator PdhR compare
PS417_27035 -0.6 -2.2 FAD-linked oxidase compare
PS417_24835 -0.6 -2.3 hypothetical protein compare
PS417_10935 -0.6 -3.4 xylose transporter compare
PS417_21750 -0.6 -5.2 acetyl-CoA synthetase compare
PS417_28510 -0.6 -2.5 chromosome partitioning protein compare
PS417_19705 -0.6 -1.8 flagellar biosynthesis regulator FlhF compare
PS417_01195 -0.6 -1.7 RNA-binding protein S4 compare
PS417_19090 -0.6 -1.8 hypothetical protein compare
PS417_17420 -0.6 -3.8 ethanol oxidation regulatory protein ercA (from data) compare
PS417_26470 -0.6 -1.0 cytochrome C compare
PS417_22385 -0.6 -4.2 quinolinate synthase A compare
PS417_16855 -0.6 -1.5 cation:proton antiporter compare
PS417_11175 -0.6 -1.0 AraC family transcriptional regulator compare
PS417_15770 -0.6 -1.1 pyridoxine 5'-phosphate oxidase compare
PS417_13870 -0.6 -1.1 hypothetical protein compare
PS417_26445 -0.6 -2.0 ArsR family transcriptional regulator compare
PS417_19065 -0.6 -1.0 monooxygenase compare
PS417_20665 -0.6 -2.8 hypothetical protein compare
PS417_06680 -0.6 -3.7 nuclease PIN compare
PS417_04860 -0.6 -3.1 ATPase compare
PS417_25920 -0.6 -3.3 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_27220 -0.5 -3.3 type II secretion system protein E compare
PS417_14805 -0.5 -1.1 AraC family transcriptional regulator compare
PS417_06100 -0.5 -1.2 SAM-dependent methyltransferase compare
PS417_10040 -0.5 -0.8 MFS transporter compare
PS417_02980 -0.5 -1.0 chemotaxis protein compare
PS417_09915 -0.5 -1.3 hypothetical protein compare
PS417_16225 -0.5 -2.4 sugar ABC transporter permease compare
PS417_10655 -0.5 -1.9 LuxR family transcriptional regulator compare
PS417_18395 -0.5 -1.8 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_12660 -0.5 -1.2 hypothetical protein compare
PS417_24115 -0.5 -1.3 hypothetical protein compare
PS417_02720 -0.5 -0.7 TetR family transcriptional regulator compare
PS417_12840 -0.5 -1.9 TetR family transcriptional regulator compare
PS417_15095 -0.5 -1.5 hypothetical protein compare
PS417_16715 -0.5 -0.7 DoxX family protein compare
PS417_04835 -0.5 -1.9 hemolysin D compare
PS417_11930 -0.5 -3.3 hypothetical protein compare
PS417_07795 -0.5 -1.6 hypothetical protein compare
PS417_10575 -0.5 -1.0 DNA alkylation repair protein compare
PS417_27180 -0.5 -1.9 peroxidase compare
PS417_28355 -0.5 -1.7 cardiolipin synthetase compare
PS417_15540 -0.5 -1.1 NUDIX hydrolase compare
PS417_12695 -0.5 -3.1 mannitol dehydrogenase compare
PS417_02670 -0.5 -1.6 ABC transporter compare
PS417_20775 -0.5 -2.7 coproporphyrinogen III oxidase compare
PS417_22895 -0.5 -3.2 tyrosine recombinase XerD compare
PS417_15275 -0.5 -1.8 type VI secretion protein compare
PS417_27605 -0.5 -3.2 hypothetical protein compare
PS417_21510 -0.5 -1.1 histidine kinase compare
PS417_11885 -0.5 -1.5 Inositol transport system sugar-binding protein (from data) compare
PS417_13990 -0.5 -1.6 LysR family transcriptional regulator compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Xylose in Pseudomonas simiae WCS417

For carbon source D-Xylose across organisms