Experiment set1IT024 for Pseudomonas simiae WCS417

Compare to:

L-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -8.1 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18585 -6.7 -6.5 3-isopropylmalate dehydrogenase compare
PS417_18600 -6.3 -5.4 isopropylmalate isomerase compare
PS417_25720 -6.2 -10.2 anthranilate synthase component II compare
PS417_01855 -5.9 -3.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_26740 -5.8 -12.0 homoserine acetyltransferase compare
PS417_23545 -5.8 -5.6 gamma-glutamyl kinase compare
PS417_02005 -5.5 -15.1 glutamate synthase compare
PS417_23805 -5.5 -7.5 acetolactate synthase 3 regulatory subunit compare
PS417_04415 -5.5 -12.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18595 -5.4 -4.9 3-isopropylmalate dehydratase compare
PS417_23800 -5.3 -14.5 ketol-acid reductoisomerase compare
PS417_24745 -5.1 -7.8 gamma-glutamyl phosphate reductase compare
PS417_02510 -5.1 -13.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23810 -5.0 -12.0 acetolactate synthase 3 catalytic subunit compare
PS417_25725 -5.0 -15.6 anthranilate synthase component I compare
PS417_23110 -5.0 -12.6 2-isopropylmalate synthase compare
PS417_18560 -4.8 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_16465 -4.7 -15.4 sirohydrochlorin ferrochelatase compare
PS417_26745 -4.6 -6.5 methionine biosynthesis protein MetW compare
PS417_01850 -4.5 -13.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00185 -4.5 -7.2 tryptophan synthase subunit beta compare
PS417_12855 -4.5 -7.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27040 -4.5 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_02000 -4.3 -14.8 glutamate synthase compare
PS417_18530 -4.3 -7.1 O-succinylhomoserine sulfhydrylase compare
PS417_11010 -4.3 -10.5 FAH family protein conserved
PS417_04420 -4.3 -10.5 histidinol dehydrogenase compare
PS417_11015 -4.1 -6.6 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) conserved
PS417_27795 -4.0 -2.2 orotate phosphoribosyltransferase compare
PS417_11000 -4.0 -8.4 L-arabonate dehydratase (EC 4.2.1.25) (from data) conserved
PS417_01565 -4.0 -5.2 imidazole glycerol phosphate synthase compare
PS417_00180 -3.9 -3.8 tryptophan synthase subunit alpha compare
PS417_07640 -3.8 -5.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_25710 -3.8 -2.0 indole-3-glycerol-phosphate synthase compare
PS417_12290 -3.7 -7.6 sulfite reductase compare
PS417_26995 -3.7 -15.4 phosphoserine phosphatase compare
PS417_05595 -3.6 -7.4 ornithine carbamoyltransferase compare
PS417_08125 -3.6 -2.4 prephenate dehydratase compare
PS417_01580 -3.5 -1.5 imidazole glycerol phosphate synthase compare
PS417_25715 -3.4 -4.6 anthranilate phosphoribosyltransferase compare
PS417_26890 -3.4 -5.4 dihydroxy-acid dehydratase compare
PS417_27195 -3.4 -2.6 N-acetylglutamate synthase compare
PS417_02415 -3.4 -7.4 phosphoserine phosphatase compare
PS417_06375 -3.3 -1.8 deoxycytidine triphosphate deaminase compare
PS417_26730 -3.3 -2.4 pyrroline-5-carboxylate reductase compare
PS417_01605 -2.9 -3.8 phosphoglycerate mutase compare
PS417_27835 -2.9 -10.0 endoribonuclease compare
PS417_11005 -2.8 -9.6 L-arabinose transporter (from data) conserved
PS417_24155 -2.8 -4.5 ATP-binding protein compare
PS417_20125 -2.8 -4.4 phosphoribosylglycinamide formyltransferase compare
PS417_20160 -2.7 -5.5 cysteine synthase compare
PS417_23995 -2.7 -1.8 preprotein translocase subunit SecG compare
PS417_21020 -2.4 -15.0 phosphoenolpyruvate synthase compare
PS417_18690 -2.4 -7.3 aromatic amino acid aminotransferase compare
PS417_26040 -2.3 -5.5 malate synthase compare
PS417_16570 -2.3 -10.2 isocitrate lyase compare
PS417_20985 -2.2 -4.3 porin compare
PS417_23770 -2.1 -3.3 exodeoxyribonuclease V subunit alpha compare
PS417_26985 -2.1 -4.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01210 -2.0 -9.2 hypothetical protein compare
PS417_11030 -1.9 -8.8 L-arabinose transporter ATP-binding protein conserved
PS417_23775 -1.9 -3.3 exodeoxyribonuclease V subunit beta compare
PS417_07170 -1.9 -4.6 hypothetical protein compare
PS417_07470 -1.9 -2.2 hypothetical protein compare
PS417_01560 -1.8 -2.8 imidazoleglycerol-phosphate dehydratase compare
PS417_11020 -1.8 -5.9 L-arabinolactonase (EC 3.1.1.15) (from data) conserved
PS417_21705 -1.8 -6.9 arginine N-succinyltransferase compare
PS417_00755 -1.8 -1.6 biofilm PGA synthesis protein PgaD compare
PS417_11045 -1.7 -7.7 3-oxoacyl-ACP reductase conserved
PS417_04365 -1.6 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_27435 -1.6 -7.1 polyphosphate kinase compare
PS417_27105 -1.5 -7.8 spermidine/putrescine ABC transporter permease compare
PS417_06600 -1.5 -1.5 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_21125 -1.4 -6.7 phosphoadenosine phosphosulfate reductase compare
PS417_05570 -1.4 -4.8 DeoR faimly transcriptional regulator compare
PS417_21510 -1.4 -1.9 histidine kinase compare
PS417_23900 -1.4 -9.7 poly(A) polymerase compare
PS417_01570 -1.4 -0.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_18590 -1.4 -2.9 SAM-dependent methyltransferase compare
PS417_27010 -1.4 -8.3 threonine dehydratase compare
PS417_21035 -1.3 -8.1 multidrug transporter compare
PS417_28220 -1.3 -2.8 LysR family transcriptional regulator compare
PS417_13510 -1.3 -1.9 polyketide cyclase compare
PS417_12310 -1.3 -6.8 methionine synthase compare
PS417_04270 -1.3 -8.1 ribonuclease G compare
PS417_05165 -1.3 -2.1 cytosol aminopeptidase compare
PS417_01995 -1.2 -2.1 hypothetical protein compare
PS417_03925 -1.2 -6.6 nicotinate-nucleotide pyrophosphorylase compare
PS417_08320 -1.2 -3.2 metal-chelation protein CHAD compare
PS417_02485 -1.2 -4.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_11025 -1.2 -4.5 sugar ABC transporter substrate-binding protein conserved
PS417_08205 -1.1 -4.2 acetyltransferase compare
PS417_21700 -1.1 -3.1 arginine N-succinyltransferase compare
PS417_27705 -1.1 -2.0 amino acid dehydrogenase compare
PS417_16990 -1.1 -6.8 acyl-CoA dehydrogenase compare
PS417_22385 -1.1 -7.3 quinolinate synthase A compare
PS417_22520 -1.1 -3.0 histidine kinase compare
PS417_17795 -1.1 -2.0 ABC transporter permease compare
PS417_02225 -1.1 -3.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23380 -1.1 -2.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_23375 -1.1 -2.3 cytochrome C oxidase compare
PS417_04410 -1.1 -1.3 hypothetical protein compare
PS417_07950 -1.0 -1.7 MFS transporter compare
PS417_27305 -1.0 -4.4 5-formyltetrahydrofolate cyclo-ligase compare
PS417_27115 -1.0 -6.7 putrescine ABC transporter, ATPase component (from data) compare
PS417_04650 -1.0 -1.9 D-alanine--D-alanine ligase compare
PS417_24835 -1.0 -3.7 hypothetical protein compare
PS417_05975 -1.0 -1.1 chemotaxis protein CheW compare
PS417_08225 -1.0 -3.9 acetolactate synthase compare
PS417_21335 -1.0 -4.8 sugar ABC transporter substrate-binding protein compare
PS417_26725 -1.0 -2.8 hypothetical protein compare
PS417_27035 -1.0 -4.0 FAD-linked oxidase compare
PS417_08245 -1.0 -1.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21655 -1.0 -1.7 aspartate kinase compare
PS417_04500 -0.9 -1.8 hypothetical protein compare
PS417_08195 -0.9 -5.5 hypothetical protein compare
PS417_22445 -0.9 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_27715 -0.9 -2.4 Fe-S oxidoreductase compare
PS417_04385 -0.9 -3.0 organic solvent ABC transporter substrate-binding protein compare
PS417_16520 -0.9 -1.9 cold-shock protein compare
PS417_19835 -0.9 -1.6 flagellar biosynthesis protein FliS compare
PS417_06685 -0.9 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_20665 -0.9 -4.6 hypothetical protein compare
PS417_07560 -0.9 -1.5 universal stress protein UspA compare
PS417_15540 -0.8 -1.6 NUDIX hydrolase compare
PS417_25825 -0.8 -2.8 sulfurtransferase compare
PS417_12390 -0.8 -1.9 hypothetical protein compare
PS417_13800 -0.8 -3.0 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_04375 -0.8 -2.0 ABC transporter ATP-binding protein compare
PS417_21625 -0.8 -1.3 DNA-binding protein compare
PS417_03935 -0.8 -3.5 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_01180 -0.8 -3.4 ribosomal protein S6 modification protein compare
PS417_18355 -0.8 -3.9 DNA-binding protein compare
PS417_03560 -0.8 -1.3 GTP-binding protein compare
PS417_02720 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_04180 -0.8 -3.4 GntR family transcriptional regulator compare
PS417_08135 -0.8 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_16490 -0.8 -1.7 cell division protein FtsK compare
PS417_08685 -0.8 -1.2 flagellar hook-length control protein FliK compare
PS417_10425 -0.8 -1.9 hypothetical protein compare
PS417_26990 -0.8 -1.3 RNA pyrophosphohydrolase compare
PS417_21210 -0.8 -2.1 amidotransferase compare
PS417_01710 -0.8 -3.7 histidine utilization repressor compare
PS417_08200 -0.8 -2.7 hypothetical protein compare
PS417_26510 -0.8 -5.3 5,10-methylenetetrahydrofolate reductase compare
PS417_06200 -0.8 -3.8 protein-PII uridylyltransferase compare
PS417_21425 -0.8 -1.7 4-amino-4-deoxychorismate lyase compare
PS417_10220 -0.8 -2.8 hypothetical protein compare
PS417_22450 -0.8 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_28080 -0.7 -5.3 phosphate ABC transporter permease compare
PS417_21285 -0.7 -2.6 hypothetical protein compare
PS417_17565 -0.7 -2.0 branched-chain amino acid aminotransferase compare
PS417_14980 -0.7 -1.1 universal stress protein UspA compare
PS417_00705 -0.7 -1.3 MarR family transcriptional regulator compare
PS417_17480 -0.7 -3.2 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_03785 -0.7 -1.4 pilus assembly protein PilV compare
PS417_22115 -0.7 -1.9 transcriptional regulator compare
PS417_20610 -0.7 -1.5 hypothetical protein compare
PS417_22375 -0.7 -0.9 cold-shock protein compare
PS417_03100 -0.7 -0.9 pilus assembly protein compare
PS417_18755 -0.7 -1.8 CrtK compare
PS417_24615 -0.7 -1.3 hypothetical protein compare
PS417_05025 -0.7 -2.0 maleylacetoacetate isomerase compare
PS417_05455 -0.7 -3.6 XRE family transcriptional regulator compare
PS417_02980 -0.7 -1.5 chemotaxis protein compare
PS417_22270 -0.7 -3.0 hypothetical protein compare
PS417_27110 -0.7 -2.7 spermidine/putrescine ABC transporter permease compare
PS417_08230 -0.7 -1.7 lipopolysaccharide biosynthesis protein RfbH compare
PS417_05850 -0.7 -2.5 LysR family transcriptional regulator compare
PS417_25390 -0.7 -3.8 MFS transporter compare
PS417_04080 -0.7 -1.7 peptide ABC transporter substrate-binding protein compare
PS417_27875 -0.7 -4.3 histidine kinase compare
PS417_24310 -0.7 -2.5 ankyrin compare
PS417_27870 -0.7 -2.4 ATP-dependent DNA helicase RecG compare
PS417_06445 -0.6 -1.7 iron-siderophore ABC transporter permease compare
PS417_21870 -0.6 -2.3 glycerophosphodiester phosphodiesterase compare
PS417_05860 -0.6 -2.8 hypothetical protein compare
PS417_04860 -0.6 -3.7 ATPase compare
PS417_17240 -0.6 -2.5 trigger factor compare
PS417_02045 -0.6 -2.3 3-oxoacyl-ACP synthase compare
PS417_04585 -0.6 -1.5 hypothetical protein compare
PS417_00030 -0.6 -1.3 hypothetical protein compare
PS417_24125 -0.6 -2.0 hypothetical protein compare
PS417_02690 -0.6 -3.4 N-acylglucosamine 2-epimerase compare
PS417_06735 -0.6 -1.7 3-oxoadipate enol-lactonase compare
PS417_02480 -0.6 -2.5 DNA mismatch repair protein compare
PS417_08510 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_04390 -0.6 -3.8 toluene tolerance protein compare
PS417_22780 -0.6 -1.9 XRE family transcriptional regulator compare
PS417_18920 -0.6 -1.6 hypothetical protein compare
PS417_24765 -0.6 -3.0 membrane protein compare
PS417_21000 -0.6 -1.4 CrfX protein compare
PS417_19840 -0.6 -3.9 flagellar cap protein FliD compare
PS417_21750 -0.6 -5.3 acetyl-CoA synthetase compare
PS417_00165 -0.6 -3.7 galactonate dehydratase compare
PS417_13050 -0.6 -1.8 N-acetylglucosamine-6-sulfatase compare
PS417_13990 -0.6 -1.7 LysR family transcriptional regulator compare
PS417_21690 -0.6 -3.3 N-succinylarginine dihydrolase compare
PS417_07540 -0.6 -2.1 multifunctional fatty acid oxidation complex subunit alpha compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source L-Arabinose in Pseudomonas simiae WCS417

For carbon source L-Arabinose across organisms