Experiment set1IT024 for Variovorax sp. OAS795

Compare to:

4-Hydroxybenzoic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS15375 -7.7 -5.2 DUF934 domain-containing protein compare
ABID97_RS19705 -7.3 -4.4 carboxymuconolactone decarboxylase family protein conserved
ABID97_RS13860 -5.9 -4.4 hypothetical protein compare
ABID97_RS24195 -5.8 -5.6 3-oxoacid CoA-transferase subunit B conserved
ABID97_RS16595 -5.5 -4.5 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS15365 -5.5 -5.4 sulfate adenylyltransferase subunit CysD compare
ABID97_RS23225 -5.3 -15.6 glutamate synthase-related protein compare
ABID97_RS17270 -5.2 -7.1 ATP-binding protein compare
ABID97_RS24055 -5.1 -3.0 TetR/AcrR family transcriptional regulator compare
ABID97_RS15360 -4.9 -6.9 GTP-binding protein compare
ABID97_RS16600 -4.8 -8.1 CysB family HTH-type transcriptional regulator compare
ABID97_RS07000 -4.8 -8.0 threonine ammonia-lyase, biosynthetic compare
ABID97_RS20615 -4.8 -5.1 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS19930 -4.8 -1.5 DUF2160 domain-containing protein compare
ABID97_RS05260 -4.6 -1.4 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS24200 -4.5 -6.8 3-oxoacid CoA-transferase subunit A conserved
ABID97_RS14945 -4.5 -14.1 4-hydroxybenzoate 3-monooxygenase conserved
ABID97_RS12110 -4.5 -1.4 phosphoribosyltransferase family protein compare
ABID97_RS07405 -4.3 -12.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS05250 -4.3 -5.1 anthranilate synthase component I compare
ABID97_RS10880 -4.3 -3.3 Mth938-like domain-containing protein compare
ABID97_RS15370 -4.2 -9.2 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS09180 -4.2 -2.9 DNA polymerase I compare
ABID97_RS10885 -4.1 -5.6 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS04605 -4.1 -13.8 glutamate--cysteine ligase compare
ABID97_RS15380 -4.1 -9.7 nitrite/sulfite reductase compare
ABID97_RS14160 -4.0 -6.1 cell division protein ZapE compare
ABID97_RS25525 -4.0 -3.2 LacI family DNA-binding transcriptional regulator compare
ABID97_RS24380 -4.0 -14.4 protocatechuate 3,4-dioxygenase subunit beta conserved
ABID97_RS06575 -3.9 -6.8 trehalose-phosphatase compare
ABID97_RS23915 -3.9 -2.7 heme o synthase compare
ABID97_RS21150 -3.9 -7.5 FAD-dependent oxidoreductase compare
ABID97_RS20740 -3.9 -8.3 FUSC family membrane protein compare
ABID97_RS25015 -3.8 -2.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS04960 -3.8 -1.2 ATP-binding protein compare
ABID97_RS23230 -3.7 -10.6 transposase compare
ABID97_RS08770 -3.7 -11.9 histidinol-phosphate transaminase compare
ABID97_RS24375 -3.7 -10.3 LysR substrate-binding domain-containing protein conserved
ABID97_RS19895 -3.7 -5.4 histone deacetylase family protein compare
ABID97_RS17590 -3.7 -11.3 endopeptidase La compare
ABID97_RS13450 -3.7 -2.2 TetR/AcrR family transcriptional regulator compare
ABID97_RS14285 -3.6 -4.3 phosphoribosyltransferase compare
ABID97_RS16920 -3.6 -11.8 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS10590 -3.6 -11.7 nicotinate phosphoribosyltransferase compare
ABID97_RS16535 -3.6 -7.6 arginine/lysine/ornithine decarboxylase compare
ABID97_RS06345 -3.6 -2.5 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS14950 -3.5 -6.6 IclR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS24385 -3.5 -4.5 protocatechuate 3,4-dioxygenase subunit alpha conserved
ABID97_RS17225 -3.5 -11.5 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS13990 -3.5 -2.4 amino acid aminotransferase compare
ABID97_RS27635 -3.5 -1.1 NAD(P)H-dependent oxidoreductase compare
ABID97_RS14095 -3.5 -10.2 PAS domain S-box protein compare
ABID97_RS24945 -3.5 -8.4 cation diffusion facilitator family transporter compare
ABID97_RS18820 -3.4 -1.8 PrpF domain-containing protein compare
ABID97_RS19940 -3.4 -4.4 sugar ABC transporter permease compare
ABID97_RS28080 -3.4 -1.1 YbaN family protein compare
ABID97_RS10355 -3.4 -7.4 FadR/GntR family transcriptional regulator compare
ABID97_RS16505 -3.4 -5.6 dipeptide ABC transporter ATP-binding protein compare
ABID97_RS02600 -3.4 -4.0 homoserine O-acetyltransferase compare
ABID97_RS08240 -3.3 -1.8 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS10295 -3.3 -1.5 winged helix-turn-helix transcriptional regulator compare
ABID97_RS05855 -3.3 -11.1 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABID97_RS04610 -3.3 -9.4 potassium transporter Kup compare
ABID97_RS23220 -3.3 -1.4 glutamate synthase subunit beta compare
ABID97_RS17360 -3.3 -1.7 alpha/beta hydrolase compare
ABID97_RS24370 -3.2 -3.9 DUF1841 family protein compare
ABID97_RS08570 -3.1 -6.3 ferrous iron transporter B compare
ABID97_RS05365 -3.1 -3.7 DUF4390 domain-containing protein compare
ABID97_RS05275 -3.1 -1.9 anthranilate phosphoribosyltransferase compare
ABID97_RS19695 -3.0 -1.3 alpha/beta fold hydrolase compare
ABID97_RS08425 -3.0 -5.0 tryptophan synthase subunit alpha compare
ABID97_RS17600 -3.0 -2.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS01565 -3.0 -7.8 DNA starvation/stationary phase protection protein compare
ABID97_RS04760 -3.0 -1.8 SPOR domain-containing protein compare
ABID97_RS08550 -3.0 -17.2 aconitate hydratase AcnA compare
ABID97_RS01420 -3.0 -12.6 cyclopropane-fatty-acyl-phospholipid synthase family protein conserved
ABID97_RS02460 -3.0 -13.2 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS03805 -3.0 -1.3 ATP-binding protein compare
ABID97_RS17895 -2.9 -6.7 transcriptional regulator NrdR compare
ABID97_RS20095 -2.9 -2.0 DNA topoisomerase IV subunit B compare
ABID97_RS21055 -2.9 -5.9 2OG-Fe dioxygenase family protein compare
ABID97_RS02510 -2.9 -20.2 NADP-dependent malic enzyme compare
ABID97_RS15665 -2.9 -8.4 [protein-PII] uridylyltransferase compare
ABID97_RS07380 -2.8 -5.7 S41 family peptidase compare
ABID97_RS17635 -2.8 -3.0 presqualene diphosphate synthase HpnD compare
ABID97_RS20980 -2.8 -1.2 transcriptional repressor compare
ABID97_RS14090 -2.8 -1.2 response regulator transcription factor compare
ABID97_RS05750 -2.8 -1.9 glycosyltransferase compare
ABID97_RS22980 -2.7 -12.6 cytochrome bc complex cytochrome b subunit compare
ABID97_RS10705 -2.7 -4.7 H-NS histone family protein compare
ABID97_RS14985 -2.7 -1.2 hypothetical protein compare
ABID97_RS06275 -2.7 -1.7 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS00730 -2.7 -3.0 DUF4148 domain-containing protein compare
ABID97_RS23940 -2.7 -6.1 cytochrome c oxidase subunit 3 compare
ABID97_RS02455 -2.7 -3.7 nucleotidyltransferase family protein compare
ABID97_RS04630 -2.7 -5.6 glutathione synthase compare
ABID97_RS17265 -2.6 -3.2 two-component system response regulator OmpR compare
ABID97_RS23950 -2.6 -11.0 cytochrome c oxidase assembly protein compare
ABID97_RS16985 -2.6 -3.9 transcriptional repressor LexA compare
ABID97_RS27085 -2.6 -1.1 DNA alkylation repair protein compare
ABID97_RS23665 -2.6 -1.9 DNA-directed RNA polymerase subunit omega compare
ABID97_RS00335 -2.6 -7.8 c-type cytochrome compare
ABID97_RS23645 -2.6 -1.5 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS05370 -2.6 -4.6 ATP-binding protein compare
ABID97_RS19925 -2.6 -7.8 ABC transporter substrate-binding protein compare
ABID97_RS16450 -2.5 -10.1 anti-sigma factor compare
ABID97_RS23455 -2.5 -3.8 hypothetical protein compare
ABID97_RS05280 -2.5 -1.7 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS17310 -2.5 -4.3 PLP-dependent aminotransferase family protein compare
ABID97_RS11545 -2.5 -1.1 branched-chain amino acid ABC transporter permease compare
ABID97_RS25085 -2.4 -3.7 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS03790 -2.4 -9.5 branched-chain amino acid transaminase compare
ABID97_RS12180 -2.4 -2.0 hypothetical protein compare
ABID97_RS19065 -2.4 -4.4 GntR family transcriptional regulator compare
ABID97_RS20965 -2.4 -7.6 glutamate--cysteine ligase compare
ABID97_RS08435 -2.4 -1.6 phosphoribosylanthranilate isomerase compare
ABID97_RS14625 -2.4 -4.5 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS04505 -2.4 -2.6 ferric iron uptake transcriptional regulator compare
ABID97_RS06450 -2.4 -1.6 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS08775 -2.4 -2.0 ribosome small subunit-dependent GTPase A compare
ABID97_RS01980 -2.4 -4.7 hypothetical protein compare
ABID97_RS16520 -2.3 -11.7 extracellular solute-binding protein compare
ABID97_RS23710 -2.3 -8.2 RNase adapter RapZ compare
ABID97_RS04765 -2.3 -1.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS16510 -2.3 -9.0 ABC transporter permease compare
ABID97_RS06460 -2.3 -1.6 sigma 54-interacting transcriptional regulator compare
ABID97_RS04500 -2.3 -1.6 HPr(Ser) kinase/phosphatase compare
ABID97_RS16515 -2.3 -7.4 ABC transporter permease subunit compare
ABID97_RS23930 -2.2 -10.2 SURF1 family protein compare
ABID97_RS08765 -2.2 -4.1 CobD/CbiB family protein compare
ABID97_RS16690 -2.2 -4.3 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS05765 -2.2 -2.1 UDP-glucose 4-epimerase GalE compare
ABID97_RS16780 -2.1 -1.5 polysaccharide deacetylase family protein compare
ABID97_RS02060 -2.1 -10.1 TonB-dependent siderophore receptor compare
ABID97_RS14665 -2.1 -2.8 UvrD-helicase domain-containing protein compare
ABID97_RS16910 -2.1 -9.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS07435 -2.1 -8.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS06390 -2.1 -3.2 carbohydrate kinase family protein compare
ABID97_RS21060 -2.1 -6.4 DUF427 domain-containing protein compare
ABID97_RS21365 -2.1 -8.2 protein-L-isoaspartate O-methyltransferase compare
ABID97_RS05755 -2.1 -2.4 glycosyltransferase compare
ABID97_RS17970 -2.1 -4.9 protein TolQ compare
ABID97_RS16705 -2.1 -8.9 ribonuclease G compare
ABID97_RS23935 -2.1 -1.6 twin transmembrane helix small protein compare
ABID97_RS21205 -2.1 -8.5 IlvD/Edd family dehydratase compare
ABID97_RS10565 -2.1 -4.1 phasin family protein compare
ABID97_RS23965 -2.1 -8.4 cytochrome c oxidase subunit II compare
ABID97_RS24045 -2.0 -3.5 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS23960 -2.0 -9.4 cytochrome c oxidase subunit I compare
ABID97_RS15450 -2.0 -2.6 transglutaminase family protein compare
ABID97_RS20020 -2.0 -1.1 LacI family DNA-binding transcriptional regulator compare
ABID97_RS23425 -2.0 -1.8 tRNA-Pro compare
ABID97_RS24170 -2.0 -5.2 ATP-binding protein compare
ABID97_RS03800 -2.0 -2.6 O-antigen ligase family protein compare
ABID97_RS23390 -2.0 -8.2 RNA pyrophosphohydrolase compare
ABID97_RS23330 -2.0 -6.8 c-type cytochrome compare
ABID97_RS16065 -1.9 -1.3 PDR/VanB family oxidoreductase compare
ABID97_RS07170 -1.9 -9.3 hemolysin family protein compare
ABID97_RS03910 -1.9 -1.8 orotate phosphoribosyltransferase compare
ABID97_RS06520 -1.9 -1.3 SAM-dependent methyltransferase compare
ABID97_RS22975 -1.9 -4.7 cytochrome c1 compare
ABID97_RS23920 -1.9 -7.9 COX15/CtaA family protein compare
ABID97_RS15465 -1.9 -10.6 sulfate ABC transporter substrate-binding protein compare
ABID97_RS13865 -1.9 -3.7 hypothetical protein compare
ABID97_RS23290 -1.9 -7.1 penicillin-binding protein 1A compare
ABID97_RS24510 -1.9 -1.0 cytidylate kinase family protein compare
ABID97_RS01455 -1.8 -9.2 AacA4 family aminoglycoside N(6')-acetyltransferase compare
ABID97_RS19935 -1.8 -3.9 carbohydrate ABC transporter permease compare
ABID97_RS16580 -1.8 -2.4 leucyl aminopeptidase compare
ABID97_RS19950 -1.8 -5.6 ABC transporter ATP-binding protein compare
ABID97_RS23450 -1.8 -4.7 MBOAT family protein compare
ABID97_RS06365 -1.7 -1.3 TlpA disulfide reductase family protein compare
ABID97_RS16695 -1.7 -9.5 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS24920 -1.7 -1.4 Holliday junction branch migration protein RuvA compare
ABID97_RS05670 -1.7 -1.2 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS08480 -1.7 -1.2 citrate synthase compare
ABID97_RS06600 -1.7 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS23695 -1.7 -8.7 heat-inducible transcriptional repressor HrcA compare
ABID97_RS14260 -1.7 -5.6 FtsH protease activity modulator HflK compare
ABID97_RS18815 -1.7 -1.9 fumarylacetoacetate hydrolase family protein compare
ABID97_RS13985 -1.7 -6.9 polyhydroxyalkanoate depolymerase conserved
ABID97_RS08430 -1.7 -1.1 tryptophan synthase subunit beta compare
ABID97_RS13155 -1.6 -2.2 MarR family winged helix-turn-helix transcriptional regulator compare
ABID97_RS22985 -1.6 -2.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABID97_RS16290 -1.6 -6.2 protein-glutamate O-methyltransferase CheR compare
ABID97_RS13435 -1.6 -1.8 fumarylacetoacetate hydrolase family protein compare
ABID97_RS03140 -1.6 -1.1 tRNA-Gly compare
ABID97_RS19220 -1.6 -1.2 DNA polymerase Y family protein compare
ABID97_RS05865 -1.6 -6.9 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein conserved
ABID97_RS02985 -1.6 -2.8 TetR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS20405 -1.6 -2.6 MarR family transcriptional regulator compare
ABID97_RS07945 -1.6 -2.7 citryl-CoA lyase compare
ABID97_RS02075 -1.6 -5.6 DUF3717 domain-containing protein compare
ABID97_RS01650 -1.6 -1.1 orotidine-5'-phosphate decarboxylase compare
ABID97_RS12140 -1.6 -5.2 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS13570 -1.6 -4.0 IclR family transcriptional regulator compare
ABID97_RS11090 -1.6 -2.9 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS07775 -1.5 -2.5 phosphoribosylglycinamide formyltransferase compare
ABID97_RS26470 -1.5 -1.0 c-type cytochrome compare
ABID97_RS28245 -1.5 -0.9 SDR family NAD(P)-dependent oxidoreductase compare


Specific Phenotypes

For 29 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Variovorax sp. OAS795

For carbon source 4-Hydroxybenzoic Acid across organisms