Experiment set1IT024 for Pseudomonas sp. RS175
D-Mannose carbon 10 mM
Group: carbon sourceMedia: MME_noCarbon + D-Mannose (10 mM), pH=7
Culturing: Pseudomonas_RS175_ML2, 96 deep-well microplate; 1.2 mL volume, Aerobic, at 30 (C), shaken=1200 rpm
By: Joshua Elmore on 1-Jul-22
Media components: 9.1 mM Potassium phosphate dibasic trihydrate, 20 mM 3-(N-morpholino)propanesulfonic acid, 4.3 mM Sodium Chloride, 10 mM Ammonium chloride, 0.41 mM Magnesium Sulfate Heptahydrate, 0.07 mM Calcium chloride dihydrate, MME Trace Minerals (0.5 mg/L EDTA tetrasodium tetrahydrate salt, 2 mg/L Ferric chloride, 0.05 mg/L Boric Acid, 0.05 mg/L Zinc chloride, 0.03 mg/L copper (II) chloride dihydrate, 0.05 mg/L Manganese (II) chloride tetrahydrate, 0.05 mg/L Diammonium molybdate, 0.05 mg/L Cobalt chloride hexahydrate, 0.05 mg/L Nickel (II) chloride hexahydrate)
Specific Phenotypes
For 14 genes in this experiment
For carbon source D-Mannose in Pseudomonas sp. RS175
For carbon source D-Mannose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization | 6 |
| Fructose utilization | 2 |
| Mannitol Utilization | 2 |
| Fructose and Mannose Inducible PTS | 1 |
| Sialic Acid Metabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fructose and mannose metabolism
- Nucleotide sugars metabolism
- Aminosugars metabolism
- Ascorbate and aldarate metabolism
- Glycolysis / Gluconeogenesis
- Galactose metabolism
- C21-Steroid hormone metabolism
- Glycine, serine and threonine metabolism
- Bisphenol A degradation
- Starch and sucrose metabolism
- Polyketide sugar unit biosynthesis
- Linoleic acid metabolism
- Tetrachloroethene degradation
- Benzoate degradation via CoA ligation
- Butanoate metabolism
- Retinol metabolism
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide products
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| N-acetylneuraminate and N-acetylmannosamine degradation II | 3 | 1 | 1 |
| D-fructuronate degradation | 4 | 3 | 1 |
| sulfoquinovose degradation III | 4 | 1 | 1 |
| mannitol cycle | 5 | 4 | 1 |
| sulfoquinovose degradation I | 5 | 1 | 1 |
| sulfoquinovose degradation VI | 5 | 1 | 1 |
| superpathway of β-D-glucuronosides degradation | 7 | 4 | 1 |
| sulfoquinovose degradation V | 7 | 3 | 1 |
| superpathway of hexuronide and hexuronate degradation | 10 | 4 | 1 |
| superpathway of microbial D-galacturonate and D-glucuronate degradation | 31 | 14 | 1 |