Experiment set1IT023 for Rhizobium sp. OAE497

Compare to:

Itaconic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS18590 -6.6 -7.9 homoserine O-succinyltransferase compare
ABIE40_RS11950 -6.5 -4.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS18380 -6.4 -8.7 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS02340 -6.2 -10.4 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS19040 -6.1 -4.2 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS17525 -6.1 -3.5 lipoprotein compare
ABIE40_RS00245 -5.9 -9.9 prephenate dehydratase compare
ABIE40_RS13330 -5.8 -10.5 2-isopropylmalate synthase compare
ABIE40_RS09095 -5.7 -3.9 PAS domain-containing sensor histidine kinase compare
ABIE40_RS19050 -5.7 -10.2 3-isopropylmalate dehydrogenase compare
ABIE40_RS18775 -5.6 -13.1 pyruvate carboxylase compare
ABIE40_RS19355 -5.5 -5.0 thioredoxin compare
ABIE40_RS09545 -5.4 -3.7 anthranilate phosphoribosyltransferase compare
ABIE40_RS18920 -5.4 -7.4 glutamate 5-kinase compare
ABIE40_RS09150 -5.4 -16.9 nitrite/sulfite reductase compare
ABIE40_RS08635 -5.4 -6.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS17530 -5.3 -3.7 diaminopimelate decarboxylase compare
ABIE40_RS16320 -5.3 -3.6 histidinol-phosphatase compare
ABIE40_RS03665 -5.2 -3.6 ATP phosphoribosyltransferase compare
ABIE40_RS02725 -5.2 -3.6 histidinol dehydrogenase compare
ABIE40_RS24490 -5.2 -1.8 flavin reductase compare
ABIE40_RS01970 -5.1 -3.5 acetylglutamate kinase compare
ABIE40_RS10725 -5.1 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS20460 -5.1 -3.5 precorrin-3B synthase compare
ABIE40_RS02325 -5.1 -3.5 ornithine carbamoyltransferase compare
ABIE40_RS03660 -5.1 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS19435 -5.0 -2.9 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS10720 -4.9 -3.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS11105 -4.8 -3.3 cobyrinate a,c-diamide synthase compare
ABIE40_RS19460 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS11175 -4.8 -3.3 cobyric acid synthase compare
ABIE40_RS09725 -4.8 -3.3 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS06930 -4.7 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS06560 -4.7 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS19440 -4.7 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS19330 -4.6 -3.2 phosphoribosylanthranilate isomerase compare
ABIE40_RS13410 -4.6 -3.2 anthranilate synthase compare
ABIE40_RS11165 -4.6 -3.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS20440 -4.5 -3.1 cobalt-precorrin-6A reductase compare
ABIE40_RS17650 -4.5 -3.1 cobaltochelatase subunit CobS compare
ABIE40_RS11495 -4.5 -3.1 acetolactate synthase 3 large subunit compare
ABIE40_RS20435 -4.5 -3.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS10180 -4.4 -4.3 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS02320 -4.4 -3.1 aspartate aminotransferase family protein compare
ABIE40_RS14990 -4.4 -12.6 glycosyltransferase family 2 protein compare
ABIE40_RS01930 -4.4 -2.5 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS11150 -4.3 -9.2 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS14980 -4.3 -3.0 glycoside hydrolase family 16 protein compare
ABIE40_RS17595 -4.3 -3.0 histidinol-phosphate transaminase compare
ABIE40_RS12925 -4.3 -12.4 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS09360 -4.3 -4.2 excinuclease ABC subunit UvrA compare
ABIE40_RS19450 -4.3 -3.0 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS20455 -4.2 -2.4 precorrin-8X methylmutase compare
ABIE40_RS06270 -4.2 -7.9 amidophosphoribosyltransferase compare
ABIE40_RS03190 -4.2 -2.9 phosphogluconate dehydratase compare
ABIE40_RS11155 -4.1 -4.9 cobaltochelatase subunit CobN compare
ABIE40_RS19130 -4.1 -2.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS20430 -4.1 -2.8 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS16070 -4.0 -3.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS20465 -4.0 -2.7 precorrin-6A synthase (deacetylating) compare
ABIE40_RS14985 -4.0 -2.6 glycosyltransferase compare
ABIE40_RS08005 -3.9 -2.7 dihydroxy-acid dehydratase compare
ABIE40_RS06730 -3.9 -6.5 riboflavin synthase compare
ABIE40_RS03405 -3.9 -2.7 anti-sigma factor compare
ABIE40_RS12135 -3.9 -2.7 methionine synthase compare
ABIE40_RS19445 -3.8 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS15345 -3.8 -10.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS16655 -3.8 -6.7 creatininase family protein compare
ABIE40_RS09090 -3.8 -8.0 nitrogen regulation protein NR(I) compare
ABIE40_RS18925 -3.7 -6.7 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS05155 -3.7 -6.1 DUF5330 domain-containing protein compare
ABIE40_RS19480 -3.7 -2.5 DUF1402 family protein compare
ABIE40_RS08425 -3.6 -3.4 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS05430 -3.6 -2.5 phosphoribosylamine--glycine ligase compare
ABIE40_RS18720 -3.5 -2.4 polyprenyl synthetase family protein compare
ABIE40_RS17590 -3.4 -2.3 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS20450 -3.4 -3.7 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS10155 -3.4 -2.2 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS12845 -3.4 -5.0 glycosyltransferase family 4 protein compare
ABIE40_RS11095 -3.3 -5.9 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS06725 -3.3 -6.5 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS06050 -3.3 -6.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS09660 -3.3 -13.1 AI-2E family transporter compare
ABIE40_RS16570 -3.2 -4.2 tetratricopeptide repeat protein compare
ABIE40_RS20445 -3.2 -1.5 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS10200 -3.2 -2.2 Grx4 family monothiol glutaredoxin compare
ABIE40_RS05660 -3.1 -4.2 response regulator transcription factor compare
ABIE40_RS09155 -3.1 -5.0 DUF934 domain-containing protein compare
ABIE40_RS09540 -3.1 -7.1 peptidylprolyl isomerase compare
ABIE40_RS00930 -3.1 -7.6 ABC transporter permease compare
ABIE40_RS17645 -3.1 -4.6 cobaltochelatase subunit CobT compare
ABIE40_RS06555 -3.1 -1.8 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS00935 -3.0 -6.1 ABC transporter substrate-binding protein compare
ABIE40_RS00580 -3.0 -3.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS08645 -3.0 -6.4 LL-diaminopimelate aminotransferase compare
ABIE40_RS09140 -2.9 -8.5 siroheme synthase CysG compare
ABIE40_RS19245 -2.9 -5.4 Maf-like protein compare
ABIE40_RS09170 -2.9 -5.8 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS18880 -2.9 -12.9 UDP-glucose 4-epimerase GalE compare
ABIE40_RS06265 -2.8 -2.6 SDR family NAD(P)-dependent oxidoreductase compare
ABIE40_RS10345 -2.8 -6.7 RNA polymerase-binding protein DksA compare
ABIE40_RS15730 -2.7 -3.1 crossover junction endodeoxyribonuclease RuvC compare
ABIE40_RS00725 -2.7 -4.9 DNA cytosine methyltransferase compare
ABIE40_RS06720 -2.7 -2.5 transcriptional regulator NrdR compare
ABIE40_RS04475 -2.6 -11.2 phosphoadenylyl-sulfate reductase compare
ABIE40_RS19645 -2.6 -11.8 acyltransferase compare
ABIE40_RS29155 -2.6 -1.6 transport-associated protein compare
ABIE40_RS05665 -2.6 -4.0 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS13370 -2.6 -11.3 CDF family cation efflux transporter EmfA compare
ABIE40_RS18970 -2.6 -3.3 murein hydrolase activator EnvC compare
ABIE40_RS19265 -2.5 -3.0 protein-export chaperone SecB compare
ABIE40_RS04465 -2.5 -11.7 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS07740 -2.5 -2.2 elongation factor Tu compare
ABIE40_RS19395 -2.5 -2.8 PTS sugar transporter subunit IIA compare
ABIE40_RS23000 -2.5 -5.2 TetR/AcrR family transcriptional regulator compare
ABIE40_RS19365 -2.4 -3.7 double-strand break repair protein AddB compare
ABIE40_RS14855 -2.4 -7.6 NAD-dependent epimerase compare
ABIE40_RS20055 -2.4 -2.1 sugar phosphate isomerase/epimerase compare
ABIE40_RS16490 -2.4 -11.4 glycogen synthase GlgA compare
ABIE40_RS14955 -2.4 -8.1 sugar transferase compare
ABIE40_RS18300 -2.4 -8.8 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS04470 -2.3 -13.8 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS05685 -2.3 -11.8 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS18640 -2.3 -11.0 M48 family metalloprotease compare
ABIE40_RS01055 -2.3 -6.1 translation elongation factor 4 compare
ABIE40_RS06645 -2.2 -2.5 hypothetical protein compare
ABIE40_RS01765 -2.2 -5.0 [protein-PII] uridylyltransferase compare
ABIE40_RS28065 -2.2 -2.3 hypothetical protein compare
ABIE40_RS10140 -2.2 -3.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS09720 -2.1 -4.2 GTP cyclohydrolase I FolE compare
ABIE40_RS08970 -2.1 -7.8 citrate synthase compare
ABIE40_RS15855 -2.1 -2.1 cell division protein ZapA compare
ABIE40_RS07105 -2.1 -2.4 DNA-binding protein HupB compare
ABIE40_RS19615 -2.0 -2.2 DUF1109 domain-containing protein compare
ABIE40_RS08140 -2.0 -10.3 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS14940 -1.9 -9.0 acyltransferase compare
ABIE40_RS00490 -1.9 -9.6 DNA polymerase I compare
ABIE40_RS09425 -1.9 -3.1 peptidylprolyl isomerase compare
ABIE40_RS12360 -1.9 -10.4 DUF5131 family protein compare
ABIE40_RS28370 -1.9 -1.1 oxidoreductase compare
ABIE40_RS00960 -1.8 -3.8 formyltetrahydrofolate deformylase compare
ABIE40_RS10390 -1.8 -2.5 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS19260 -1.8 -2.6 DNA polymerase III subunit epsilon compare
ABIE40_RS00340 -1.7 -2.5 30S ribosome-binding factor RbfA compare
ABIE40_RS17585 -1.7 -3.8 DUF2125 domain-containing protein compare
ABIE40_RS08935 -1.7 -2.6 RIP metalloprotease RseP compare
ABIE40_RS19670 -1.7 -1.5 ABC transporter ATP-binding protein compare
ABIE40_RS18055 -1.7 -3.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS11875 -1.7 -2.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE40_RS18290 -1.6 -8.4 heme ABC transporter permease compare
ABIE40_RS15760 -1.6 -4.8 Holliday junction branch migration DNA helicase RuvB compare
ABIE40_RS27520 -1.6 -1.7 hypothetical protein compare
ABIE40_RS19700 -1.6 -3.1 MBL fold metallo-hydrolase compare
ABIE40_RS09145 -1.6 -4.0 DUF2849 domain-containing protein compare
ABIE40_RS24730 -1.6 -6.3 glycerol-3-phosphate dehydrogenase compare
ABIE40_RS18735 -1.6 -4.2 TetR/AcrR family transcriptional regulator compare
ABIE40_RS20315 -1.5 -1.2 type II toxin-antitoxin system VapB family antitoxin compare
ABIE40_RS17560 -1.5 -3.4 cell division ATP-binding protein FtsE compare
ABIE40_RS30700 -1.5 -1.0 hypothetical protein compare
ABIE40_RS15670 -1.5 -4.8 anti-sigma factor compare
ABIE40_RS08980 -1.5 -3.2 transcriptional repressor LexA compare
ABIE40_RS15010 -1.5 -6.7 metallophosphoesterase compare
ABIE40_RS06135 -1.5 -3.7 tyrosine phosphatase family protein compare
ABIE40_RS27160 -1.5 -1.0 low affinity iron permease family protein compare
ABIE40_RS06700 -1.5 -2.4 MarR family winged helix-turn-helix transcriptional regulator compare
ABIE40_RS11060 -1.5 -3.9 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS09980 -1.5 -2.0 Fe-S cluster assembly scaffold SufA compare
ABIE40_RS18685 -1.4 -3.5 beta-ketoacyl-ACP reductase compare
ABIE40_RS11960 -1.4 -1.8 energy-dependent translational throttle protein EttA compare
ABIE40_RS09685 -1.4 -1.7 nitroreductase compare
ABIE40_RS10035 -1.4 -2.6 DUF3971 domain-containing protein compare
ABIE40_RS00925 -1.4 -3.0 ABC transporter permease compare
ABIE40_RS06220 -1.4 -9.1 citramalate synthase compare
ABIE40_RS10850 -1.4 -3.9 excinuclease ABC subunit UvrB compare
ABIE40_RS17565 -1.4 -1.3 ABC transporter permease compare
ABIE40_RS16170 -1.3 -2.1 DUF882 domain-containing protein compare
ABIE40_RS01860 -1.3 -7.9 RNA polymerase factor sigma-54 compare
ABIE40_RS00625 -1.3 -6.6 ABC transporter permease compare
ABIE40_RS08865 -1.3 -5.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE40_RS17010 -1.3 -5.7 sugar ABC transporter permease compare
ABIE40_RS06275 -1.3 -3.5 CvpA family protein compare
ABIE40_RS05680 -1.3 -4.9 cytochrome c maturation protein CcmE compare
ABIE40_RS07475 -1.3 -1.9 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
ABIE40_RS05365 -1.3 -4.1 tetratricopeptide repeat protein compare
ABIE40_RS05165 -1.3 -2.7 peptidoglycan-binding protein compare
ABIE40_RS01705 -1.3 -6.3 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABIE40_RS14850 -1.3 -5.6 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE40_RS14415 -1.3 -1.5 hemin uptake protein HemP compare
ABIE40_RS26865 -1.2 -2.2 hypothetical protein compare
ABIE40_RS10430 -1.2 -7.4 MlaE family lipid ABC transporter permease subunit compare
ABIE40_RS22300 -1.2 -3.3 superoxide dismutase compare
ABIE40_RS06775 -1.2 -3.1 DUF177 domain-containing protein compare
ABIE40_RS16210 -1.2 -5.3 homospermidine synthase compare
ABIE40_RS01355 -1.2 -5.6 phospholipid N-methyltransferase PmtA compare
ABIE40_RS05025 -1.2 -3.0 MucR family transcriptional regulator compare
ABIE40_RS13635 -1.2 -9.5 peptide antibiotic transporter SbmA compare
ABIE40_RS15745 -1.2 -3.6 Holliday junction branch migration protein RuvA compare
ABIE40_RS00585 -1.2 -4.3 4-hydroxy-tetrahydrodipicolinate reductase compare
ABIE40_RS08695 -1.2 -2.1 hypothetical protein compare
ABIE40_RS12855 -1.2 -4.9 glycosyltransferase family 2 protein compare


Specific Phenotypes

None in this experiment

For Rhizobium sp. OAE497 in carbon source experiments

For carbon source Itaconic Acid across organisms