Experiment set1IT022 for Pseudomonas simiae WCS417

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_01855 -6.3 -5.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_18585 -6.1 -7.2 3-isopropylmalate dehydrogenase compare
PS417_04415 -5.8 -12.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25720 -5.6 -9.5 anthranilate synthase component II compare
PS417_23800 -5.5 -13.4 ketol-acid reductoisomerase compare
PS417_01575 -5.5 -8.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_08125 -5.4 -2.2 prephenate dehydratase compare
PS417_27040 -5.3 -6.3 3-phosphoglycerate dehydrogenase compare
PS417_26740 -5.3 -15.6 homoserine acetyltransferase compare
PS417_27795 -5.2 -2.1 orotate phosphoribosyltransferase compare
PS417_25725 -5.1 -19.1 anthranilate synthase component I compare
PS417_18560 -5.1 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23805 -5.0 -8.3 acetolactate synthase 3 regulatory subunit compare
PS417_12855 -5.0 -7.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24745 -4.8 -6.6 gamma-glutamyl phosphate reductase compare
PS417_04420 -4.8 -13.9 histidinol dehydrogenase compare
PS417_01565 -4.8 -8.5 imidazole glycerol phosphate synthase compare
PS417_01850 -4.8 -10.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23810 -4.7 -12.2 acetolactate synthase 3 catalytic subunit compare
PS417_16465 -4.7 -16.5 sirohydrochlorin ferrochelatase compare
PS417_18595 -4.5 -5.7 3-isopropylmalate dehydratase compare
PS417_02510 -4.5 -12.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23545 -4.5 -6.7 gamma-glutamyl kinase compare
PS417_02005 -4.5 -14.8 glutamate synthase compare
PS417_23995 -4.4 -1.8 preprotein translocase subunit SecG compare
PS417_18600 -4.3 -6.4 isopropylmalate isomerase compare
PS417_12290 -4.1 -9.8 sulfite reductase compare
PS417_26745 -4.1 -5.6 methionine biosynthesis protein MetW compare
PS417_27195 -3.9 -2.1 N-acetylglutamate synthase compare
PS417_00185 -3.8 -6.6 tryptophan synthase subunit beta compare
PS417_18530 -3.8 -7.8 O-succinylhomoserine sulfhydrylase compare
PS417_25710 -3.7 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_03975 -3.6 -14.9 FruA conserved
PS417_25715 -3.6 -4.5 anthranilate phosphoribosyltransferase compare
PS417_03965 -3.6 -7.5 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) conserved
PS417_05595 -3.5 -8.3 ornithine carbamoyltransferase compare
PS417_26890 -3.5 -6.2 dihydroxy-acid dehydratase compare
PS417_02000 -3.5 -16.6 glutamate synthase compare
PS417_00180 -3.4 -5.6 tryptophan synthase subunit alpha compare
PS417_06375 -3.3 -1.9 deoxycytidine triphosphate deaminase compare
PS417_28220 -3.3 -4.9 LysR family transcriptional regulator compare
PS417_26730 -3.3 -2.5 pyrroline-5-carboxylate reductase compare
PS417_22690 -3.2 -7.8 phosphogluconate dehydratase compare
PS417_02415 -3.2 -8.5 phosphoserine phosphatase compare
PS417_23110 -3.1 -6.5 2-isopropylmalate synthase compare
PS417_26995 -3.1 -12.4 phosphoserine phosphatase compare
PS417_20125 -3.0 -7.6 phosphoribosylglycinamide formyltransferase compare
PS417_03970 -3.0 -3.1 1-phosphofructokinase compare
PS417_09725 -3.0 -11.4 transporter compare
PS417_23770 -2.8 -4.9 exodeoxyribonuclease V subunit alpha compare
PS417_01560 -2.8 -3.6 imidazoleglycerol-phosphate dehydratase compare
PS417_01605 -2.6 -2.1 phosphoglycerate mutase compare
PS417_01580 -2.5 -1.5 imidazole glycerol phosphate synthase compare
PS417_21035 -2.4 -10.7 multidrug transporter compare
PS417_14940 -2.3 -3.9 LysR family transcriptional regulator compare
PS417_20985 -2.2 -5.1 porin compare
PS417_24155 -2.2 -3.9 ATP-binding protein compare
PS417_22520 -2.2 -3.8 histidine kinase compare
PS417_12695 -2.1 -8.2 mannitol dehydrogenase compare
PS417_27010 -2.1 -11.7 threonine dehydratase compare
PS417_01570 -2.1 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_21705 -2.1 -7.7 arginine N-succinyltransferase compare
PS417_20160 -2.1 -3.2 cysteine synthase compare
PS417_06680 -2.1 -13.8 nuclease PIN compare
PS417_22695 -2.0 -10.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_20610 -2.0 -2.8 hypothetical protein compare
PS417_12690 -1.9 -1.8 xylulose kinase compare
PS417_27835 -1.8 -8.0 endoribonuclease compare
PS417_08200 -1.7 -5.6 hypothetical protein compare
PS417_03925 -1.7 -8.9 nicotinate-nucleotide pyrophosphorylase compare
PS417_27535 -1.7 -9.1 chemotaxis protein CheY compare
PS417_01710 -1.6 -7.4 histidine utilization repressor compare
PS417_08230 -1.6 -2.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08225 -1.6 -5.4 acetolactate synthase compare
PS417_08195 -1.5 -8.7 hypothetical protein compare
PS417_00650 -1.5 -1.7 LysR family transcriptional regulator compare
PS417_22385 -1.5 -8.9 quinolinate synthase A compare
PS417_24835 -1.5 -4.8 hypothetical protein compare
PS417_13510 -1.5 -2.1 polyketide cyclase compare
PS417_27875 -1.4 -8.1 histidine kinase compare
PS417_22570 -1.4 -1.3 H-NS histone compare
PS417_26040 -1.4 -5.2 malate synthase compare
PS417_01210 -1.4 -7.3 hypothetical protein compare
PS417_21750 -1.4 -10.9 acetyl-CoA synthetase compare
PS417_06200 -1.3 -4.7 protein-PII uridylyltransferase compare
PS417_08205 -1.3 -4.9 acetyltransferase compare
PS417_28050 -1.2 -5.1 hypothetical protein compare
PS417_08155 -1.2 -1.9 integration host factor subunit beta compare
PS417_08580 -1.2 -5.8 histidine kinase compare
PS417_22680 -1.1 -3.3 chemotaxis protein CheY compare
PS417_08220 -1.1 -1.0 epimerase compare
PS417_21510 -1.1 -1.8 histidine kinase compare
PS417_13645 -1.1 -3.8 ABC transporter compare
PS417_08430 -1.1 -5.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_13800 -1.0 -2.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_16490 -1.0 -2.9 cell division protein FtsK compare
PS417_21125 -1.0 -5.0 phosphoadenosine phosphosulfate reductase compare
PS417_16005 -1.0 -3.2 ATPase compare
PS417_17455 -1.0 -4.4 cytochrome C compare
PS417_05165 -1.0 -2.1 cytosol aminopeptidase compare
PS417_18055 -1.0 -2.1 general secretion pathway protein GspK compare
PS417_17480 -1.0 -3.8 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_20665 -1.0 -4.6 hypothetical protein compare
PS417_17485 -0.9 -4.0 membrane protein compare
PS417_17240 -0.9 -3.8 trigger factor compare
PS417_20620 -0.9 -5.1 glycosyl transferase family 2 compare
PS417_22060 -0.9 -1.6 hypothetical protein compare
PS417_23900 -0.9 -6.9 poly(A) polymerase compare
PS417_24765 -0.9 -3.4 membrane protein compare
PS417_15780 -0.9 -2.9 membrane protein compare
PS417_01920 -0.9 -2.4 ATP-dependent protease subunit HslV compare
PS417_16990 -0.9 -5.4 acyl-CoA dehydrogenase compare
PS417_24620 -0.9 -1.9 hypothetical protein compare
PS417_09730 -0.9 -2.9 adenylylsulfate kinase compare
PS417_21700 -0.9 -3.9 arginine N-succinyltransferase compare
PS417_04180 -0.9 -3.8 GntR family transcriptional regulator compare
PS417_14805 -0.9 -2.1 AraC family transcriptional regulator compare
PS417_13165 -0.8 -1.5 peroxidase compare
PS417_10575 -0.8 -2.3 DNA alkylation repair protein compare
PS417_17435 -0.8 -6.7 dehydrogenase compare
PS417_18690 -0.8 -3.0 aromatic amino acid aminotransferase compare
PS417_17495 -0.8 -4.3 multidrug ABC transporter permease compare
PS417_16570 -0.8 -4.9 isocitrate lyase compare
PS417_00295 -0.8 -3.6 hypothetical protein compare
PS417_04410 -0.8 -1.0 hypothetical protein compare
PS417_07890 -0.8 -2.5 hypothetical protein compare
PS417_08685 -0.8 -2.2 flagellar hook-length control protein FliK compare
PS417_07170 -0.8 -2.4 hypothetical protein compare
PS417_21000 -0.8 -1.6 CrfX protein compare
PS417_20855 -0.8 -1.0 hypothetical protein compare
PS417_17490 -0.8 -2.4 ABC transporter ATP-binding protein compare
PS417_04650 -0.8 -1.5 D-alanine--D-alanine ligase compare
PS417_08990 -0.8 -2.4 ABC transporter substrate-binding protein compare
PS417_27870 -0.8 -3.5 ATP-dependent DNA helicase RecG compare
PS417_04375 -0.8 -2.1 ABC transporter ATP-binding protein compare
PS417_17425 -0.8 -3.9 hypothetical protein compare
PS417_25920 -0.8 -5.2 pyrroloquinoline quinone biosynthesis protein PqqF compare
PS417_02225 -0.8 -1.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_21690 -0.8 -3.6 N-succinylarginine dihydrolase compare
PS417_21430 -0.8 -2.3 3-oxoacyl-ACP synthase compare
PS417_13640 -0.7 -2.4 ribose ABC transporter permease compare
PS417_28100 -0.7 -3.4 glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data) compare
PS417_17505 -0.7 -3.1 LuxR family transcriptional regulator compare
PS417_04595 -0.7 -2.5 cell division protein MraZ compare
PS417_23775 -0.7 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_07595 -0.7 -3.2 PasA protein compare
PS417_08245 -0.7 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_22140 -0.7 -5.6 glucose/xylose ABC transporter, permease component 2 (from data) compare
PS417_26815 -0.7 -1.4 peptidase M16 compare
PS417_22375 -0.7 -1.0 cold-shock protein compare
PS417_26005 -0.7 -4.9 biotin synthase compare
PS417_09705 -0.7 -3.0 hypothetical protein compare
PS417_22445 -0.7 -2.7 ATP-dependent DNA helicase RuvB compare
PS417_07305 -0.7 -1.6 3-beta hydroxysteroid dehydrogenase compare
PS417_19705 -0.7 -2.6 flagellar biosynthesis regulator FlhF compare
PS417_05695 -0.7 -3.6 transcriptional regulator compare
PS417_07115 -0.7 -5.2 L-aspartate oxidase compare
PS417_24810 -0.7 -3.8 aldehyde dehydrogenase compare
PS417_18420 -0.7 -1.5 deoxyribonuclease compare
PS417_15465 -0.7 -2.2 carboxynorspermidine decarboxylase compare
PS417_24935 -0.6 -0.6 hypothetical protein compare
PS417_10425 -0.6 -1.4 hypothetical protein compare
PS417_00065 -0.6 -1.5 3-methyladenine DNA glycosylase compare
PS417_25930 -0.6 -3.8 pyrroloquinoline quinone biosynthesis protein PqqC compare
PS417_24675 -0.6 -1.5 lipoyl synthase compare
PS417_13635 -0.6 -4.4 D-ribose transporter ATP-binding protein compare
PS417_22675 -0.6 -3.7 histidine kinase compare
PS417_03560 -0.6 -1.3 GTP-binding protein compare
PS417_07165 -0.6 -3.4 dihydrodipicolinate synthase compare
PS417_13295 -0.6 -3.8 TetR family transcriptional regulator compare
PS417_28510 -0.6 -3.6 chromosome partitioning protein compare
PS417_00465 -0.6 -3.1 hypothetical protein compare
PS417_22685 -0.6 -5.5 Glucokinase (EC 2.7.1.2) (from data) compare
PS417_17420 -0.6 -4.4 ethanol oxidation regulatory protein ercA (from data) compare
PS417_02485 -0.6 -3.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08045 -0.6 -0.9 uracil permease compare
PS417_10480 -0.6 -1.6 glutathione S-transferase compare
PS417_22145 -0.6 -4.0 glucose/xylose ABC transporter, periplasmic substrate-binding component (from data) compare
PS417_01995 -0.6 -1.3 hypothetical protein compare
PS417_21655 -0.6 -1.1 aspartate kinase compare
PS417_06350 -0.6 -3.1 stationary phase survival protein SurE compare
PS417_04220 -0.6 -1.2 4-carboxymuconolactone decarboxylase compare
PS417_23250 -0.6 -3.7 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_25985 -0.6 -1.6 dethiobiotin synthetase compare
PS417_09440 -0.6 -0.9 MerR family transcriptional regulator compare
PS417_11455 -0.6 -2.1 hypothetical protein compare
PS417_22950 -0.6 -1.7 preQ0 transporter compare
PS417_22135 -0.6 -3.6 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_04270 -0.6 -3.7 ribonuclease G compare
PS417_23830 -0.6 -3.9 hypothetical protein compare
PS417_20340 -0.6 -1.8 hypothetical protein compare
PS417_15885 -0.6 -1.5 GCN5 family acetyltransferase compare
PS417_25940 -0.6 -2.5 pyrroloquinoline quinone biosynthesis protein PqqE compare
PS417_25790 -0.6 -2.8 aminoglycoside phosphotransferase compare
PS417_05365 -0.6 -1.3 FAD-binding protein compare
PS417_21210 -0.5 -1.4 amidotransferase compare
PS417_01730 -0.5 -3.2 histidine ABC transporter substrate-binding protein compare
PS417_04585 -0.5 -1.4 hypothetical protein compare
PS417_24100 -0.5 -2.9 transcriptional regulator PdhR compare
PS417_10220 -0.5 -2.3 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Fructose in Pseudomonas simiae WCS417

For carbon source D-Fructose across organisms