Experiment set1IT022 for Rhizobium sp. OAE497

Compare to:

Itaconic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS19050 -6.8 -4.7 3-isopropylmalate dehydrogenase compare
ABIE40_RS19355 -6.7 -4.4 thioredoxin compare
ABIE40_RS18590 -6.6 -6.5 homoserine O-succinyltransferase compare
ABIE40_RS00245 -6.6 -6.4 prephenate dehydratase compare
ABIE40_RS18380 -6.5 -7.7 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS02340 -6.5 -7.7 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS11950 -6.4 -4.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS19040 -6.0 -4.2 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS17525 -6.0 -3.0 lipoprotein compare
ABIE40_RS13330 -5.8 -9.7 2-isopropylmalate synthase compare
ABIE40_RS09095 -5.7 -3.9 PAS domain-containing sensor histidine kinase compare
ABIE40_RS09155 -5.7 -5.5 DUF934 domain-containing protein compare
ABIE40_RS18775 -5.6 -13.0 pyruvate carboxylase compare
ABIE40_RS06555 -5.5 -2.8 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS09545 -5.4 -3.1 anthranilate phosphoribosyltransferase compare
ABIE40_RS08635 -5.3 -6.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS18920 -5.2 -7.3 glutamate 5-kinase compare
ABIE40_RS17530 -5.2 -3.6 diaminopimelate decarboxylase compare
ABIE40_RS09150 -5.2 -17.7 nitrite/sulfite reductase compare
ABIE40_RS16320 -5.2 -3.6 histidinol-phosphatase compare
ABIE40_RS03665 -5.1 -3.5 ATP phosphoribosyltransferase compare
ABIE40_RS02725 -5.1 -3.5 histidinol dehydrogenase compare
ABIE40_RS10725 -5.1 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS01970 -5.1 -3.5 acetylglutamate kinase compare
ABIE40_RS16655 -5.0 -4.9 creatininase family protein compare
ABIE40_RS02325 -5.0 -3.4 ornithine carbamoyltransferase compare
ABIE40_RS20460 -5.0 -3.3 precorrin-3B synthase compare
ABIE40_RS19435 -4.9 -2.5 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS10720 -4.8 -2.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS11105 -4.8 -3.3 cobyrinate a,c-diamide synthase compare
ABIE40_RS19460 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS20450 -4.7 -3.2 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS11150 -4.7 -7.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS03660 -4.6 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS05155 -4.6 -3.2 DUF5330 domain-containing protein compare
ABIE40_RS09725 -4.6 -3.2 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS06560 -4.6 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS10180 -4.6 -3.2 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS13410 -4.6 -3.2 anthranilate synthase compare
ABIE40_RS19440 -4.6 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS19330 -4.6 -3.1 phosphoribosylanthranilate isomerase compare
ABIE40_RS05025 -4.5 -4.4 MucR family transcriptional regulator compare
ABIE40_RS11165 -4.5 -2.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS12925 -4.5 -11.3 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS09090 -4.5 -6.2 nitrogen regulation protein NR(I) compare
ABIE40_RS09360 -4.5 -3.1 excinuclease ABC subunit UvrA compare
ABIE40_RS17650 -4.5 -3.1 cobaltochelatase subunit CobS compare
ABIE40_RS20440 -4.4 -2.9 cobalt-precorrin-6A reductase compare
ABIE40_RS16070 -4.4 -3.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS08935 -4.3 -3.7 RIP metalloprotease RseP compare
ABIE40_RS11095 -4.3 -3.0 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS20435 -4.3 -3.0 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS27160 -4.3 -1.3 low affinity iron permease family protein compare
ABIE40_RS17595 -4.2 -2.9 histidinol-phosphate transaminase compare
ABIE40_RS19450 -4.2 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS18925 -4.1 -5.7 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS08645 -4.1 -6.3 LL-diaminopimelate aminotransferase compare
ABIE40_RS14990 -4.1 -10.8 glycosyltransferase family 2 protein compare
ABIE40_RS06270 -4.1 -7.9 amidophosphoribosyltransferase compare
ABIE40_RS18055 -4.1 -2.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS11175 -4.1 -6.8 cobyric acid synthase compare
ABIE40_RS03190 -4.1 -2.8 phosphogluconate dehydratase compare
ABIE40_RS00935 -4.0 -2.8 ABC transporter substrate-binding protein compare
ABIE40_RS20455 -4.0 -2.0 precorrin-8X methylmutase compare
ABIE40_RS19130 -4.0 -2.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS11495 -4.0 -6.1 acetolactate synthase 3 large subunit compare
ABIE40_RS20430 -4.0 -2.7 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS08005 -3.9 -2.7 dihydroxy-acid dehydratase compare
ABIE40_RS11155 -3.9 -6.5 cobaltochelatase subunit CobN compare
ABIE40_RS14985 -3.9 -2.2 glycosyltransferase compare
ABIE40_RS20465 -3.8 -2.6 precorrin-6A synthase (deacetylating) compare
ABIE40_RS12135 -3.8 -2.6 methionine synthase compare
ABIE40_RS02320 -3.8 -5.8 aspartate aminotransferase family protein compare
ABIE40_RS06050 -3.8 -5.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS03405 -3.8 -2.6 anti-sigma factor compare
ABIE40_RS06730 -3.8 -4.7 riboflavin synthase compare
ABIE40_RS19445 -3.8 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS06930 -3.7 -6.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS17645 -3.7 -2.6 cobaltochelatase subunit CobT compare
ABIE40_RS00930 -3.7 -6.6 ABC transporter permease compare
ABIE40_RS15345 -3.6 -10.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS26850 -3.6 -1.5 hypothetical protein compare
ABIE40_RS19480 -3.6 -2.4 DUF1402 family protein compare
ABIE40_RS14980 -3.6 -4.8 glycoside hydrolase family 16 protein compare
ABIE40_RS04465 -3.5 -12.4 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS05430 -3.5 -2.4 phosphoribosylamine--glycine ligase compare
ABIE40_RS14955 -3.4 -9.2 sugar transferase compare
ABIE40_RS18720 -3.4 -2.2 polyprenyl synthetase family protein compare
ABIE40_RS15920 -3.4 -1.0 50S ribosomal protein L31 compare
ABIE40_RS23670 -3.4 -2.2 hypothetical protein compare
ABIE40_RS09140 -3.3 -7.5 siroheme synthase CysG compare
ABIE40_RS19365 -3.3 -2.3 double-strand break repair protein AddB compare
ABIE40_RS17590 -3.3 -2.3 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS09660 -3.3 -12.3 AI-2E family transporter compare
ABIE40_RS10155 -3.3 -1.9 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS00725 -3.3 -5.0 DNA cytosine methyltransferase compare
ABIE40_RS27685 -3.3 -1.3 hypothetical protein compare
ABIE40_RS04215 -3.2 -2.8 sensor domain-containing phosphodiesterase compare
ABIE40_RS19455 -3.2 -2.1 DUF2628 domain-containing protein compare
ABIE40_RS20445 -3.1 -1.3 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS00580 -3.1 -3.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS01765 -3.0 -6.1 [protein-PII] uridylyltransferase compare
ABIE40_RS28165 -3.0 -2.3 hypothetical protein compare
ABIE40_RS16490 -2.9 -10.1 glycogen synthase GlgA compare
ABIE40_RS13370 -2.9 -10.2 CDF family cation efflux transporter EmfA compare
ABIE40_RS18685 -2.9 -5.7 beta-ketoacyl-ACP reductase compare
ABIE40_RS09540 -2.8 -5.9 peptidylprolyl isomerase compare
ABIE40_RS06725 -2.8 -5.6 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS19260 -2.8 -3.3 DNA polymerase III subunit epsilon compare
ABIE40_RS29835 -2.8 -1.2 transposase compare
ABIE40_RS08425 -2.8 -3.0 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS00340 -2.7 -3.4 30S ribosome-binding factor RbfA compare
ABIE40_RS19360 -2.7 -4.4 double-strand break repair helicase AddA compare
ABIE40_RS19645 -2.7 -9.5 acyltransferase compare
ABIE40_RS18880 -2.6 -10.6 UDP-glucose 4-epimerase GalE compare
ABIE40_RS10345 -2.6 -6.1 RNA polymerase-binding protein DksA compare
ABIE40_RS15730 -2.6 -3.5 crossover junction endodeoxyribonuclease RuvC compare
ABIE40_RS04475 -2.5 -10.9 phosphoadenylyl-sulfate reductase compare
ABIE40_RS19700 -2.5 -3.3 MBL fold metallo-hydrolase compare
ABIE40_RS01930 -2.5 -2.0 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS29390 -2.5 -1.0 hypothetical protein compare
ABIE40_RS17560 -2.4 -4.4 cell division ATP-binding protein FtsE compare
ABIE40_RS11960 -2.4 -1.6 energy-dependent translational throttle protein EttA compare
ABIE40_RS11060 -2.4 -4.0 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS30775 -2.3 -1.3 ferritin-like domain-containing protein compare
ABIE40_RS09980 -2.3 -2.0 Fe-S cluster assembly scaffold SufA compare
ABIE40_RS04470 -2.3 -10.2 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS06720 -2.3 -1.9 transcriptional regulator NrdR compare
ABIE40_RS19395 -2.3 -3.1 PTS sugar transporter subunit IIA compare
ABIE40_RS08140 -2.2 -10.0 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS21855 -2.2 -2.5 CDP-alcohol phosphatidyltransferase family protein compare
ABIE40_RS12360 -2.2 -9.0 DUF5131 family protein compare
ABIE40_RS09720 -2.1 -4.0 GTP cyclohydrolase I FolE compare
ABIE40_RS22665 -2.1 -2.4 class 1b ribonucleoside-diphosphate reductase subunit beta compare
ABIE40_RS01055 -2.1 -4.7 translation elongation factor 4 compare
ABIE40_RS00490 -2.1 -8.9 DNA polymerase I compare
ABIE40_RS08980 -2.1 -4.8 transcriptional repressor LexA compare
ABIE40_RS18300 -2.1 -7.3 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS19245 -2.1 -3.7 Maf-like protein compare
ABIE40_RS17000 -2.0 -5.3 ABC transporter ATP-binding protein compare
ABIE40_RS05690 -2.0 -3.1 cytochrome c-type biogenesis protein compare
ABIE40_RS09685 -1.9 -1.4 nitroreductase compare
ABIE40_RS01135 -1.9 -0.8 50S ribosomal protein L20 compare
ABIE40_RS15620 -1.9 -1.6 tol-pal system-associated acyl-CoA thioesterase compare
ABIE40_RS27255 -1.9 -1.7 hypothetical protein compare
ABIE40_RS07475 -1.9 -1.7 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
ABIE40_RS30315 -1.9 -1.2 hypothetical protein compare
ABIE40_RS12845 -1.9 -2.1 glycosyltransferase family 4 protein compare
ABIE40_RS14855 -1.9 -4.9 NAD-dependent epimerase compare
ABIE40_RS10200 -1.8 -1.9 Grx4 family monothiol glutaredoxin compare
ABIE40_RS23635 -1.8 -1.0 hypothetical protein compare
ABIE40_RS18640 -1.8 -7.5 M48 family metalloprotease compare
ABIE40_RS09170 -1.8 -4.6 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS14940 -1.8 -6.8 acyltransferase compare
ABIE40_RS06775 -1.8 -2.7 DUF177 domain-containing protein compare
ABIE40_RS07105 -1.8 -2.2 DNA-binding protein HupB compare
ABIE40_RS08970 -1.8 -6.2 citrate synthase compare
ABIE40_RS22300 -1.7 -3.4 superoxide dismutase compare
ABIE40_RS05670 -1.7 -3.4 membrane protein compare
ABIE40_RS09425 -1.7 -2.9 peptidylprolyl isomerase compare
ABIE40_RS27295 -1.7 -1.7 hypothetical protein compare
ABIE40_RS28105 -1.7 -1.7 hypothetical protein compare
ABIE40_RS05665 -1.7 -2.7 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS15590 -1.7 -3.3 tol-pal system protein YbgF compare
ABIE40_RS28420 -1.6 -1.5 30S ribosomal protein S21 compare
ABIE40_RS24490 -1.6 -1.1 flavin reductase compare
ABIE40_RS05685 -1.6 -7.2 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS03515 -1.6 -2.9 glutamate--cysteine ligase compare
ABIE40_RS18735 -1.6 -4.7 TetR/AcrR family transcriptional regulator compare
ABIE40_RS28815 -1.6 -3.8 GNAT family N-acetyltransferase compare
ABIE40_RS22660 -1.6 -2.8 class 1b ribonucleoside-diphosphate reductase subunit alpha compare
ABIE40_RS30200 -1.6 -1.6 hypothetical protein compare
ABIE40_RS00595 -1.5 -4.1 glucokinase compare
ABIE40_RS16210 -1.5 -6.1 homospermidine synthase compare
ABIE40_RS29655 -1.5 -2.3 helix-turn-helix transcriptional regulator compare
ABIE40_RS00450 -1.5 -3.8 molecular chaperone DnaJ compare
ABIE40_RS13005 -1.5 -6.0 pyrroline-5-carboxylate reductase compare
ABIE40_RS05680 -1.5 -4.6 cytochrome c maturation protein CcmE compare
ABIE40_RS18690 -1.5 -4.1 acetyl-CoA C-acetyltransferase compare
ABIE40_RS07740 -1.4 -1.4 elongation factor Tu compare
ABIE40_RS05660 -1.4 -2.0 response regulator transcription factor compare
ABIE40_RS28320 -1.4 -1.9 divalent metal cation transporter compare
ABIE40_RS10140 -1.4 -2.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS10900 -1.4 -2.8 cold-shock protein compare
ABIE40_RS07320 -1.4 -1.2 DUF3572 domain-containing protein compare
ABIE40_RS16570 -1.4 -1.5 tetratricopeptide repeat protein compare
ABIE40_RS10390 -1.4 -1.4 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS05740 -1.4 -1.4 hypothetical protein compare
ABIE40_RS21985 -1.4 -3.8 MarR family transcriptional regulator compare
ABIE40_RS19385 -1.4 -3.5 adenosylhomocysteinase compare
ABIE40_RS18255 -1.4 -1.3 hypothetical protein compare
ABIE40_RS19100 -1.4 -5.3 lytic transglycosylase domain-containing protein compare
ABIE40_RS27250 -1.4 -1.2 hypothetical protein compare
ABIE40_RS18970 -1.3 -2.2 murein hydrolase activator EnvC compare
ABIE40_RS00925 -1.3 -3.3 ABC transporter permease compare
ABIE40_RS07315 -1.3 -1.3 hypothetical protein compare
ABIE40_RS25190 -1.3 -1.6 hypothetical protein compare
ABIE40_RS08835 -1.3 -1.6 alpha/beta fold hydrolase compare
ABIE40_RS10590 -1.3 -1.3 hypothetical protein compare
ABIE40_RS09145 -1.3 -2.4 DUF2849 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Rhizobium sp. OAE497 in carbon source experiments

For carbon source Itaconic Acid across organisms