Experiment set1IT022 for Ralstonia solanacearum PSI07

Compare to:

Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Group: in planta
Media: + Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Culturing: RalstoniaPSI07_ML2, at 28 (C)
By: Tiffany Lowe-Power on 15-Dec-18

Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted in Ralstonia solanacearum PSI07

For in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted across organisms

SEED Subsystems

Subsystem #Specific
Methionine Biosynthesis 2
Biotin biosynthesis 1
NAD and NADP cofactor biosynthesis global 1
NAD regulation 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
biotin biosynthesis from 8-amino-7-oxononanoate I 4 4 2
biotin biosynthesis from 8-amino-7-oxononanoate II 4 4 2
biotin biosynthesis from 8-amino-7-oxononanoate III 5 3 2
S-adenosyl-L-methionine salvage II 3 3 1
biotin biosynthesis II 6 5 2
L-methionine biosynthesis III 4 4 1
S-adenosyl-L-methionine salvage I 4 3 1
seleno-amino acid biosynthesis (plants) 5 3 1
L-methionine biosynthesis I 5 3 1
NAD de novo biosynthesis I 6 6 1
NAD de novo biosynthesis III 6 6 1
NAD de novo biosynthesis IV (anaerobic) 6 6 1
L-methionine biosynthesis II 6 5 1
biotin biosynthesis I 15 13 2
superpathway of L-homoserine and L-methionine biosynthesis 8 6 1
superpathway of L-methionine biosynthesis (transsulfuration) 9 7 1
superpathway of S-adenosyl-L-methionine biosynthesis 9 7 1
nicotine biosynthesis 9 3 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 12 1
superpathway of nicotine biosynthesis 12 4 1
aspartate superpathway 25 23 2
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 16 1
superpathway of seleno-compound metabolism 19 6 1