Experiment set1IT021 for Pseudomonas simiae WCS417

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
PS417_27040 -6.3 -3.7 3-phosphoglycerate dehydrogenase compare
PS417_01855 -6.1 -5.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_02005 -5.8 -13.6 glutamate synthase compare
PS417_18600 -5.8 -4.3 isopropylmalate isomerase compare
PS417_25720 -5.6 -10.3 anthranilate synthase component II compare
PS417_18595 -5.6 -6.8 3-isopropylmalate dehydratase compare
PS417_23805 -5.6 -6.6 acetolactate synthase 3 regulatory subunit compare
PS417_23800 -5.4 -14.3 ketol-acid reductoisomerase compare
PS417_23545 -5.2 -6.2 gamma-glutamyl kinase compare
PS417_01575 -5.1 -8.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27795 -5.1 -2.0 orotate phosphoribosyltransferase compare
PS417_28220 -5.0 -3.6 LysR family transcriptional regulator compare
PS417_18560 -5.0 -12.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_04420 -4.9 -13.2 histidinol dehydrogenase compare
PS417_16465 -4.7 -15.6 sirohydrochlorin ferrochelatase compare
PS417_25725 -4.6 -19.0 anthranilate synthase component I compare
PS417_01850 -4.6 -8.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00185 -4.5 -6.9 tryptophan synthase subunit beta compare
PS417_27835 -4.5 -9.6 endoribonuclease compare
PS417_26740 -4.5 -10.2 homoserine acetyltransferase compare
PS417_02510 -4.4 -9.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23810 -4.3 -11.7 acetolactate synthase 3 catalytic subunit compare
PS417_06375 -4.3 -1.7 deoxycytidine triphosphate deaminase compare
PS417_23995 -4.3 -1.7 preprotein translocase subunit SecG compare
PS417_22690 -4.3 -8.1 phosphogluconate dehydratase compare
PS417_12855 -4.3 -6.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02000 -4.3 -14.9 glutamate synthase compare
PS417_01565 -4.2 -5.9 imidazole glycerol phosphate synthase compare
PS417_04415 -4.2 -9.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18585 -4.2 -9.6 3-isopropylmalate dehydrogenase compare
PS417_08125 -4.1 -2.2 prephenate dehydratase compare
PS417_26745 -4.0 -5.7 methionine biosynthesis protein MetW compare
PS417_00180 -4.0 -4.7 tryptophan synthase subunit alpha compare
PS417_26730 -3.9 -2.2 pyrroline-5-carboxylate reductase compare
PS417_20125 -3.9 -7.3 phosphoribosylglycinamide formyltransferase compare
PS417_18530 -3.9 -6.2 O-succinylhomoserine sulfhydrylase compare
PS417_24745 -3.8 -6.1 gamma-glutamyl phosphate reductase compare
PS417_27195 -3.8 -2.0 N-acetylglutamate synthase compare
PS417_23110 -3.6 -7.7 2-isopropylmalate synthase compare
PS417_05595 -3.6 -7.9 ornithine carbamoyltransferase compare
PS417_23770 -3.6 -4.1 exodeoxyribonuclease V subunit alpha compare
PS417_01580 -3.4 -1.5 imidazole glycerol phosphate synthase compare
PS417_12290 -3.4 -7.5 sulfite reductase compare
PS417_02415 -3.3 -6.7 phosphoserine phosphatase compare
PS417_26995 -3.3 -12.1 phosphoserine phosphatase compare
PS417_20160 -3.2 -4.8 cysteine synthase compare
PS417_26890 -3.2 -6.5 dihydroxy-acid dehydratase compare
PS417_01605 -3.2 -2.8 phosphoglycerate mutase compare
PS417_25715 -3.1 -4.3 anthranilate phosphoribosyltransferase compare
PS417_25710 -3.0 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_01570 -2.8 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_21705 -2.4 -8.0 arginine N-succinyltransferase compare
PS417_24155 -2.4 -3.8 ATP-binding protein compare
PS417_02555 -2.3 -15.7 exoribonuclease R compare
PS417_07170 -2.2 -3.9 hypothetical protein compare
PS417_06645 -2.2 -9.3 RNA polymerase-associated protein RapA compare
PS417_20985 -1.9 -3.5 porin compare
PS417_03310 -1.9 -11.3 carbonate dehydratase compare
PS417_08245 -1.9 -1.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18690 -1.9 -6.3 aromatic amino acid aminotransferase compare
PS417_28230 -1.8 -2.8 transcriptional regulator compare
PS417_23900 -1.8 -9.8 poly(A) polymerase compare
PS417_21125 -1.8 -8.0 phosphoadenosine phosphosulfate reductase compare
PS417_01560 -1.7 -3.3 imidazoleglycerol-phosphate dehydratase compare
PS417_21980 -1.7 -7.1 permease DsdX compare
PS417_27435 -1.7 -6.8 polyphosphate kinase compare
PS417_06680 -1.7 -9.9 nuclease PIN compare
PS417_08205 -1.6 -5.1 acetyltransferase compare
PS417_22620 -1.6 -4.4 pyruvate kinase compare
PS417_13510 -1.5 -2.0 polyketide cyclase compare
PS417_21700 -1.5 -4.0 arginine N-succinyltransferase compare
PS417_04410 -1.5 -1.9 hypothetical protein compare
PS417_26695 -1.5 -1.0 uracil phosphoribosyltransferase compare
PS417_08195 -1.5 -8.5 hypothetical protein compare
PS417_26985 -1.5 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_25985 -1.4 -2.9 dethiobiotin synthetase compare
PS417_26540 -1.4 -8.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase conserved
PS417_26005 -1.3 -7.7 biotin synthase compare
PS417_06200 -1.3 -4.5 protein-PII uridylyltransferase compare
PS417_08225 -1.3 -4.5 acetolactate synthase compare
PS417_05975 -1.3 -1.3 chemotaxis protein CheW compare
PS417_18590 -1.3 -2.5 SAM-dependent methyltransferase compare
PS417_09470 -1.2 -1.4 hypothetical protein compare
PS417_13800 -1.2 -3.6 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_25990 -1.2 -6.1 malonyl-CoA O-methyltransferase compare
PS417_20610 -1.2 -1.8 hypothetical protein compare
PS417_05455 -1.2 -5.7 XRE family transcriptional regulator compare
PS417_26000 -1.2 -7.0 8-amino-7-oxononanoate synthase compare
PS417_27005 -1.2 -1.3 membrane protein compare
PS417_27800 -1.2 -6.1 exodeoxyribonuclease III compare
PS417_08220 -1.1 -1.0 epimerase compare
PS417_08580 -1.1 -5.5 histidine kinase compare
PS417_21630 -1.1 -2.7 magnesium transporter compare
PS417_23375 -1.1 -2.4 cytochrome C oxidase compare
PS417_27035 -1.1 -3.8 FAD-linked oxidase compare
PS417_20665 -1.1 -6.1 hypothetical protein compare
PS417_15285 -1.1 -1.5 type VI secretion protein compare
PS417_26990 -1.1 -1.4 RNA pyrophosphohydrolase compare
PS417_12555 -1.1 -6.1 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_24835 -1.1 -5.3 hypothetical protein compare
PS417_21690 -1.1 -5.0 N-succinylarginine dihydrolase compare
PS417_18310 -1.1 -2.2 hypothetical protein compare
PS417_08155 -1.1 -2.3 integration host factor subunit beta compare
PS417_27010 -1.1 -6.1 threonine dehydratase compare
PS417_28070 -1.0 -5.5 phosphate ABC transporter ATP-binding protein compare
PS417_18055 -1.0 -2.1 general secretion pathway protein GspK compare
PS417_21655 -1.0 -1.8 aspartate kinase compare
PS417_08130 -1.0 -1.3 aspartate aminotransferase compare
PS417_23775 -1.0 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_08230 -1.0 -2.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_08200 -1.0 -2.8 hypothetical protein compare
PS417_27585 -1.0 -1.6 diaminopimelate epimerase compare
PS417_22210 -1.0 -1.6 AraC family transcriptional regulator compare
PS417_02805 -0.9 -1.5 urease subunit gamma compare
PS417_13205 -0.9 -2.1 isochorismate-pyruvate lyase compare
PS417_08990 -0.9 -2.6 ABC transporter substrate-binding protein compare
PS417_06895 -0.8 -3.0 DNA-binding protein compare
PS417_13165 -0.8 -1.3 peroxidase compare
PS417_07940 -0.8 -2.7 hypothetical protein compare
PS417_10060 -0.8 -1.2 hypothetical protein compare
PS417_04270 -0.8 -5.2 ribonuclease G compare
PS417_07305 -0.8 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_23390 -0.8 -4.6 ubiquinol oxidase subunit II compare
PS417_06075 -0.8 -1.7 hypothetical protein compare
PS417_21725 -0.8 -2.3 amino acid transporter compare
PS417_00650 -0.8 -1.0 LysR family transcriptional regulator compare
PS417_22695 -0.8 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_08045 -0.7 -0.8 uracil permease compare
PS417_17490 -0.7 -1.5 ABC transporter ATP-binding protein compare
PS417_08135 -0.7 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_15085 -0.7 -3.6 ATPase AAA compare
PS417_09300 -0.7 -1.7 peptidylprolyl isomerase compare
PS417_18780 -0.7 -1.3 flavin reductase compare
PS417_18425 -0.7 -1.2 sporulation protein compare
PS417_21750 -0.7 -5.9 acetyl-CoA synthetase compare
PS417_01195 -0.7 -2.6 RNA-binding protein S4 compare
PS417_15775 -0.7 -2.8 short-chain dehydrogenase compare
PS417_23385 -0.7 -3.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_10015 -0.7 -1.0 hypothetical protein compare
PS417_01635 -0.7 -2.7 nitrogen regulation protein NR(I) compare
PS417_13990 -0.7 -2.0 LysR family transcriptional regulator compare
PS417_23380 -0.7 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_07950 -0.7 -2.4 MFS transporter compare
PS417_15135 -0.7 -1.6 hypothetical protein compare
PS417_14185 -0.7 -1.8 transcriptional regulator compare
PS417_14490 -0.7 -3.8 4-alpha-glucanotransferase compare
PS417_23510 -0.7 -2.2 HopJ type III effector protein compare
PS417_24585 -0.7 -4.5 AMP nucleosidase compare
PS417_10995 -0.7 -2.0 GntR family transcriptional regulator compare
PS417_16735 -0.7 -3.1 aldehyde dehydrogenase compare
PS417_10220 -0.7 -3.0 hypothetical protein compare
PS417_21430 -0.7 -1.9 3-oxoacyl-ACP synthase compare
PS417_00295 -0.7 -3.5 hypothetical protein compare
PS417_22520 -0.7 -1.3 histidine kinase compare
PS417_15650 -0.7 -1.6 glutamine amidotransferase compare
PS417_18460 -0.6 -2.2 transcriptional regulator compare
PS417_21990 -0.6 -2.0 LacI family transcriptional regulator compare
PS417_22385 -0.6 -4.1 quinolinate synthase A compare
PS417_10425 -0.6 -1.3 hypothetical protein compare
PS417_18540 -0.6 -1.7 colicin V production CvpA compare
PS417_27945 -0.6 -1.5 type VI secretion protein ImpA compare
PS417_28280 -0.6 -2.9 hypothetical protein compare
PS417_20030 -0.6 -1.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_00220 -0.6 -0.9 hypothetical protein compare
PS417_26240 -0.6 -1.8 N-methylproline demethylase compare
PS417_19335 -0.6 -1.7 isochorismatase compare
PS417_08540 -0.6 -2.2 RNA helicase compare
PS417_23370 -0.6 -2.4 protoheme IX farnesyltransferase compare
PS417_07165 -0.6 -1.3 dihydrodipicolinate synthase compare
PS417_14655 -0.6 -1.0 lysine transporter LysE compare
PS417_12595 -0.6 -1.2 transcriptional regulator compare
PS417_03925 -0.6 -2.2 nicotinate-nucleotide pyrophosphorylase compare
PS417_26755 -0.6 -1.1 nucleoside-triphosphate diphosphatase compare
PS417_22445 -0.6 -1.9 ATP-dependent DNA helicase RuvB compare
PS417_19325 -0.6 -2.8 hypothetical protein compare
PS417_21875 -0.6 -1.5 AraC family transcriptional regulator compare
PS417_05570 -0.6 -2.5 DeoR faimly transcriptional regulator compare
PS417_18395 -0.6 -1.4 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_28080 -0.6 -4.2 phosphate ABC transporter permease compare
PS417_27870 -0.6 -1.9 ATP-dependent DNA helicase RecG compare
PS417_02150 -0.6 -4.7 potassium/proton antiporter compare
PS417_06175 -0.6 -2.7 cysteine sulfinate desulfinase compare
PS417_17840 -0.6 -1.5 betaine-aldehyde dehydrogenase compare
PS417_26470 -0.6 -1.6 cytochrome C compare
PS417_01290 -0.6 -1.3 ADP-ribose diphosphatase compare
PS417_11770 -0.6 -1.5 pyruvate dehydrogenase compare
PS417_19075 -0.6 -3.1 ABC transporter ATP-binding protein compare
PS417_07595 -0.6 -1.8 PasA protein compare
PS417_22640 -0.6 -2.7 cytochrome C biogenesis protein CcmE compare
PS417_16665 -0.6 -1.5 hypothetical protein compare
PS417_23490 -0.6 -0.9 dihydrofolate reductase compare
PS417_15095 -0.6 -1.7 hypothetical protein compare
PS417_22450 -0.6 -0.6 ATP-dependent DNA helicase RuvA compare
PS417_05155 -0.6 -2.2 DNA polymerase III subunit chi compare
PS417_19625 -0.5 -1.6 histidine kinase compare
PS417_01710 -0.5 -2.9 histidine utilization repressor compare
PS417_23950 -0.5 -1.6 polynucleotide phosphorylase/polyadenylase compare
PS417_20645 -0.5 -4.1 membrane protein compare
PS417_15885 -0.5 -1.1 GCN5 family acetyltransferase compare
PS417_03560 -0.5 -1.5 GTP-binding protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Glucose in Pseudomonas simiae WCS417

For carbon source D-Glucose across organisms