Experiment set1IT021 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_0322 -7.5 -7.8 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_0327 -7.4 -6.8 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_0331 -6.5 -2.6 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0324 -6.5 -3.0 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0330 -6.5 -2.5 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0334 -6.3 -2.5 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0328 -6.3 -1.5 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_2867 -6.1 -7.1 glycerate kinase compare
EX28DRAFT_2272 -5.8 -14.1 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_4156 -5.2 -2.0 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0323 -5.1 -4.4 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0325 -5.1 -3.2 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0321 -5.0 -1.2 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_0333 -4.9 -7.7 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0329 -4.9 -5.9 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_2531 -4.5 -3.7 endopeptidase La compare
EX28DRAFT_0332 -4.5 -6.7 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_2945 -4.4 -2.0 tyrosine recombinase XerD compare
EX28DRAFT_2263 -4.4 -5.7 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_3710 -4.2 -8.6 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_1031 -4.2 -1.4 Protein of unknown function (DUF2566) compare
EX28DRAFT_0769 -4.0 -1.3 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_2252 -3.9 -2.9 TolA protein compare
EX28DRAFT_2548 -3.7 -5.5 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_0579 -3.6 -1.2 Uncharacterized protein conserved in bacteria (DUF2256) compare
EX28DRAFT_2265 -3.6 -1.1 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0726 -3.6 -3.0 C-terminal peptidase (prc) compare
EX28DRAFT_2298 -3.5 -10.3 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_2027 -3.3 -5.2 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0523 -3.3 -1.5 Glycosyltransferase like family 2 compare
EX28DRAFT_1719 -3.3 -0.9 integration host factor, alpha subunit compare
EX28DRAFT_0972 -3.2 -2.5 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_3643 -3.2 -3.3 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_3285 -3.1 -6.4 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_0526 -3.1 -3.2 hypothetical protein compare
EX28DRAFT_1700 -3.1 -1.6 hypothetical protein compare
EX28DRAFT_2958 -3.1 -0.9 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_2264 -3.0 -6.3 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_1740 -3.0 -1.0 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_3711 -2.9 -0.9 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_2541 -2.8 -1.3 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_0697 -2.8 -2.5 ABC-type Mn2+/Zn2+ transport systems, permease components compare
EX28DRAFT_0073 -2.8 -1.6 Negative regulator of sigma E activity compare
EX28DRAFT_3616 -2.8 -3.9 threonine synthase compare
EX28DRAFT_1841 -2.8 -0.9 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_3675 -2.7 -6.8 transcriptional regulator, LacI family compare
EX28DRAFT_3645 -2.7 -3.0 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_3375 -2.7 -1.6 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_2864 -2.7 -5.1 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_4478 -2.6 -5.9 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_4544 -2.5 -2.2 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2313 -2.5 -2.7 Putative Mg2+ and Co2+ transporter CorC compare
EX28DRAFT_2240 -2.5 -3.0 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_0521 -2.5 -2.9 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2963 -2.4 -2.9 RNA compare
EX28DRAFT_3058 -2.4 -2.8 Signal transduction histidine kinase compare
EX28DRAFT_2267 -2.4 -5.6 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_0046 -2.4 -2.4 shikimate dehydrogenase compare
EX28DRAFT_0038 -2.4 -2.2 K+ transport systems, NAD-binding component compare
EX28DRAFT_0712 -2.4 -1.0 DNA polymerase III, theta subunit compare
EX28DRAFT_3851 -2.4 -8.1 Transcriptional regulator compare
EX28DRAFT_4153 -2.3 -2.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0778 -2.3 -1.4 hypothetical protein compare
EX28DRAFT_3369 -2.3 -1.2 RNA chaperone Hfq compare
EX28DRAFT_0312 -2.3 -2.6 phosphate acetyltransferase compare
EX28DRAFT_4341 -2.2 -4.1 Protein-disulfide isomerase compare
EX28DRAFT_0286 -2.1 -2.0 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_2452 -2.1 -8.1 transcriptional regulator, LacI family compare
EX28DRAFT_1650 -2.1 -2.1 ribonuclease T compare
EX28DRAFT_0069 -2.1 -1.5 Superfamily II DNA and RNA helicases compare
EX28DRAFT_1250 -2.1 -1.3 Protein of unknown function (DUF421) compare
EX28DRAFT_3372 -2.1 -4.1 HflC protein compare
EX28DRAFT_0545 -2.1 -3.7 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_2271 -2.1 -3.5 hypothetical protein compare
EX28DRAFT_4405 -2.0 -1.0 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_2916 -2.0 -5.7 diaminopimelate decarboxylase compare
EX28DRAFT_1268 -2.0 -1.7 Lysophospholipase L1 and related esterases compare
EX28DRAFT_2877 -2.0 -9.7 Predicted Rossmann fold nucleotide-binding protein compare
EX28DRAFT_4120 -2.0 -6.3 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_2045 -1.9 -0.8 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_2299 -1.9 -10.5 Transcriptional regulator/sugar kinase compare
EX28DRAFT_3297 -1.9 -4.8 ribonuclease, Rne/Rng family compare
EX28DRAFT_0132 -1.9 -4.1 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_4421 -1.8 -1.2 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_0306 -1.8 -8.8 transcriptional regulator, LacI family compare
EX28DRAFT_1573 -1.8 -1.1 hypothetical protein compare
EX28DRAFT_3079 -1.8 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2046 -1.8 -2.2 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_3883 -1.8 -3.5 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2250 -1.7 -2.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_1510 -1.7 -2.9 hypothetical protein compare
EX28DRAFT_3212 -1.7 -5.3 Lipoprotein NlpI, contains TPR repeats compare
EX28DRAFT_3434 -1.7 -2.3 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_4482 -1.7 -2.0 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) compare
EX28DRAFT_4318 -1.7 -3.9 Glucose-6-phosphate isomerase compare
EX28DRAFT_1382 -1.7 -1.7 transcriptional regulator, TetR family compare
EX28DRAFT_1493 -1.7 -6.0 Transcriptional regulator/sugar kinase compare
EX28DRAFT_2067 -1.7 -1.4 Transglycosylase SLT domain compare
EX28DRAFT_4459 -1.7 -5.1 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0111 -1.6 -1.4 FeS cluster assembly scaffold IscU compare
EX28DRAFT_3754 -1.6 -1.0 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_2043 -1.6 -7.4 transcriptional regulator, AsnC family compare
EX28DRAFT_2270 -1.6 -0.8 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_0918 -1.6 -1.5 Ogr/Delta-like zinc finger compare
EX28DRAFT_4461 -1.6 -3.5 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_2148 -1.6 -8.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3438 -1.5 -6.6 alpha,alpha-phosphotrehalase compare
EX28DRAFT_0125 -1.5 -0.8 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_2714 -1.5 -4.6 ABC-type uncharacterized transport system, permease component compare
EX28DRAFT_4386 -1.5 -2.2 Signal transduction histidine kinase compare
EX28DRAFT_2400 -1.5 -0.9 Cold shock proteins compare
EX28DRAFT_4350 -1.5 -1.2 nitrogen regulation protein NR(I) compare
EX28DRAFT_2160 -1.5 -2.7 P pilus assembly protein, pilin FimA compare
EX28DRAFT_2050 -1.5 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_0534 -1.5 -2.6 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_4419 -1.5 -2.6 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_3073 -1.5 -5.3 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_2269 -1.4 -3.4 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_0755 -1.4 -3.9 ribonuclease D compare
EX28DRAFT_0621 -1.4 -3.9 flagellar biosynthetic protein FliS compare
EX28DRAFT_4191 -1.4 -2.3 small GTP-binding protein domain compare
EX28DRAFT_0092 -1.4 -1.1 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_4327 -1.4 -3.5 transcriptional regulator, IclR family compare
EX28DRAFT_4003 -1.4 -1.3 phosphate ABC transporter, permease protein PstC compare
EX28DRAFT_0729 -1.4 -4.5 transcriptional regulator, IclR family compare
EX28DRAFT_0406 -1.4 -4.4 Transcriptional regulators compare
EX28DRAFT_4155 -1.4 -3.6 DNA adenine methylase (dam) compare
EX28DRAFT_2268 -1.4 -5.4 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_2723 -1.4 -1.5 SsrA-binding protein compare
EX28DRAFT_3275 -1.4 -9.1 Glutamate synthase domain 2 compare
EX28DRAFT_0395 -1.4 -5.0 1-phosphofructokinase compare
EX28DRAFT_0857 -1.4 -1.1 tRNA compare
EX28DRAFT_0970 -1.4 -2.6 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_0529 -1.4 -2.8 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_3813 -1.4 -5.3 Transcriptional regulators compare
EX28DRAFT_1986 -1.3 -0.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_2539 -1.3 -4.4 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_2651 -1.3 -5.2 glutamate 5-kinase compare
EX28DRAFT_3371 -1.3 -4.4 HflK protein compare
EX28DRAFT_0818 -1.3 -2.3 hypothetical protein compare
EX28DRAFT_3958 -1.3 -1.6 hypothetical protein compare
EX28DRAFT_4348 -1.3 -1.6 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_3667 -1.3 -4.0 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_0537 -1.3 -6.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_4152 -1.3 -1.0 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_4061 -1.3 -3.6 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_2262 -1.3 -4.1 Transcriptional regulators compare
EX28DRAFT_2701 -1.3 -5.3 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2543 -1.3 -3.2 protoheme IX farnesyltransferase compare
EX28DRAFT_3282 -1.3 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2668 -1.3 -6.7 Acyl-CoA dehydrogenases compare
EX28DRAFT_1558 -1.3 -3.7 hypothetical protein compare
EX28DRAFT_1332 -1.3 -1.7 Phage minor tail protein compare
EX28DRAFT_2259 -1.3 -2.8 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_0536 -1.3 -1.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_0517 -1.2 -2.3 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
EX28DRAFT_2585 -1.2 -1.6 pyrroline-5-carboxylate reductase compare
EX28DRAFT_2205 -1.2 -1.9 Molybdopterin converting factor, large subunit compare
EX28DRAFT_3669 -1.2 -4.1 3-isopropylmalate dehydrogenase compare
EX28DRAFT_0991 -1.2 -4.1 transcriptional regulator, LacI family compare
EX28DRAFT_2985 -1.2 -4.2 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_3224 -1.2 -4.1 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_3376 -1.2 -5.6 ribonuclease R compare
EX28DRAFT_3647 -1.2 -3.0 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_1500 -1.2 -1.7 Predicted transcriptional regulators compare
EX28DRAFT_2724 -1.2 -1.4 RNA compare
EX28DRAFT_2974 -1.2 -4.3 transketolase, bacterial and yeast compare
EX28DRAFT_0620 -1.2 -1.2 Flagellar protein FliT compare
EX28DRAFT_0693 -1.2 -0.5 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_2893 -1.2 -3.8 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_3127 -1.2 -1.7 DinI-like family compare
EX28DRAFT_2162 -1.2 -1.7 hypothetical protein compare
EX28DRAFT_4413 -1.2 -7.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
EX28DRAFT_0779 -1.2 -2.1 hypothetical protein compare
EX28DRAFT_0758 -1.2 -3.2 septum site-determining protein MinC compare
EX28DRAFT_4422 -1.2 -4.8 argininosuccinate lyase compare
EX28DRAFT_1019 -1.2 -1.7 Putative hemolysin compare
EX28DRAFT_2774 -1.2 -3.6 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_0076 -1.2 -2.6 elongation factor 4 compare
EX28DRAFT_3449 -1.2 -0.9 Predicted membrane protein compare
EX28DRAFT_4436 -1.1 -3.3 Transcriptional regulator compare
EX28DRAFT_2589 -1.1 -0.6 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_0091 -1.1 -0.9 hypothetical protein compare
EX28DRAFT_3259 -1.1 -2.0 Predicted P-loop-containing kinase compare
EX28DRAFT_3901 -1.1 -4.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_2109 -1.1 -3.1 Reverse transcriptase (RNA-dependent DNA polymerase) compare
EX28DRAFT_2846 -1.1 -2.5 adenylyl-sulfate kinase compare
EX28DRAFT_1300 -1.1 -0.9 hypothetical protein compare
EX28DRAFT_1335 -1.1 -1.4 Putative threonine efflux protein compare
EX28DRAFT_2532 -1.1 -2.0 RNA compare
EX28DRAFT_4324 -1.1 -1.0 probable addiction module antidote protein compare
EX28DRAFT_2565 -1.1 -4.8 tRNA-guanine transglycosylase compare
EX28DRAFT_2485 -1.1 -3.8 DNA replication and repair protein RecR compare
EX28DRAFT_1396 -1.1 -0.7 Amidases related to nicotinamidase compare
EX28DRAFT_1715 -1.1 -2.4 Cell wall-associated hydrolases (invasion-associated proteins) compare
EX28DRAFT_3708 -1.1 -0.9 Transcriptional regulators compare
EX28DRAFT_2287 -1.1 -4.6 phosphoglucomutase, alpha-D-glucose phosphate-specific compare
EX28DRAFT_4183 -1.1 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
EX28DRAFT_3668 -1.1 -5.2 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_2049 -1.1 -2.3 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days in Enterobacter asburiae PDN3

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms