Experiment set1IT021 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
EX28DRAFT_1590 +2.2 2.1 hypothetical protein compare
EX28DRAFT_0901 +2.1 1.6 hypothetical protein compare
EX28DRAFT_1021 +1.8 2.6 Protein of unknown function (DUF2474) compare
EX28DRAFT_0734 +1.7 3.0 RNA compare
EX28DRAFT_4262 +1.4 1.9 phage shock protein G compare
EX28DRAFT_2472 +1.4 0.9 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_2837 +1.4 4.7 RNA polymerase, sigma 38 subunit, RpoS compare
EX28DRAFT_2037 +1.4 1.4 DMSO reductase, iron-sulfur subunit compare
EX28DRAFT_4028 +1.3 3.2 ribokinase compare
EX28DRAFT_1271 +1.3 2.8 NlpC/P60 family compare
EX28DRAFT_0895 +1.3 2.9 Phage small terminase subunit compare
EX28DRAFT_2215 +1.2 2.9 8-amino-7-oxononanoate synthase compare
EX28DRAFT_1239 +1.2 1.2 hypothetical protein compare
EX28DRAFT_1438 +1.2 2.3 Transcriptional regulators compare
EX28DRAFT_0749 +1.1 1.4 Putative translation initiation inhibitor, yjgF family compare
EX28DRAFT_3006 +1.1 1.1 citrate lyase acyl carrier protein compare
EX28DRAFT_0255 +1.1 2.7 Domain of unknown function (DUF4123) compare
EX28DRAFT_3973 +1.1 3.5 Molecular chaperone (small heat shock protein) compare
EX28DRAFT_2627 +1.0 3.0 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_0888 +1.0 2.3 hypothetical protein compare
EX28DRAFT_0441 +1.0 1.5 Acetyltransferases compare
EX28DRAFT_1275 +1.0 1.7 hypothetical protein compare
EX28DRAFT_3056 +1.0 1.8 TIGR00156 family protein compare
EX28DRAFT_0725 +1.0 1.0 Activator of osmoprotectant transporter ProP compare
EX28DRAFT_0894 +1.0 3.9 phage major capsid protein, P2 family compare
EX28DRAFT_0850 +1.0 3.8 nitrite extrusion protein (nitrite facilitator) compare
EX28DRAFT_0434 +1.0 1.0 hypothetical protein compare
EX28DRAFT_0611 +0.9 4.7 Flagellar hook-length control protein compare
EX28DRAFT_3556 +0.9 1.6 Uncharacterized secreted protein compare
EX28DRAFT_1771 +0.9 1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4406 +0.9 2.3 cell division protein FtsN compare
EX28DRAFT_1093 +0.9 1.9 uncharacterized peroxidase-related enzyme compare
EX28DRAFT_0497 +0.9 2.8 colanic acid biosynthesis acetyltransferase WcaB compare
EX28DRAFT_4093 +0.9 4.3 3-oxoacyl-(acyl-carrier-protein) synthase compare
EX28DRAFT_2425 +0.9 0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3611 +0.9 0.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_2216 +0.8 4.0 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_4447 +0.8 3.0 PPIC-type PPIASE domain compare
EX28DRAFT_4123 +0.8 2.8 transcriptional regulator, DeoR family compare
EX28DRAFT_3311 +0.8 0.9 ribosomal protein L11 methyltransferase compare
EX28DRAFT_0541 +0.8 1.0 RNA compare
EX28DRAFT_1527 +0.8 0.8 hypothetical protein compare
EX28DRAFT_2838 +0.8 4.0 Membrane proteins related to metalloendopeptidases compare
EX28DRAFT_1024 +0.8 1.3 hypothetical protein compare
EX28DRAFT_0806 +0.8 1.4 type VI secretion protein, VC_A0111 family compare
EX28DRAFT_0358 +0.8 3.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_1029 +0.8 1.2 ABC-type spermidine/putrescine transport system, permease component II compare
EX28DRAFT_4203 +0.8 1.0 phosphonates metabolism transcriptional regulator PhnF compare
EX28DRAFT_2967 +0.8 1.6 transcriptional regulator, ArgP family compare
EX28DRAFT_4065 +0.8 1.2 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_0914 +0.8 2.4 Phage P2 GpE compare
EX28DRAFT_4107 +0.7 3.3 hypothetical protein compare
EX28DRAFT_1694 +0.7 2.0 hypothetical protein compare
EX28DRAFT_0613 +0.7 4.1 flagellar protein export ATPase FliI compare
EX28DRAFT_3874 +0.7 4.0 ADP-heptose:LPS heptosyltransferase compare
EX28DRAFT_0848 +0.7 1.3 two component transcriptional regulator, LuxR family compare
EX28DRAFT_3784 +0.7 1.4 hypothetical protein compare
EX28DRAFT_0180 +0.7 1.7 Peroxiredoxin compare
EX28DRAFT_1742 +0.7 1.7 PTS system, lactose/cellobiose family IIB component compare
EX28DRAFT_4266 +0.7 1.0 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_3736 +0.7 1.5 2'-5' RNA ligase compare
EX28DRAFT_4534 +0.7 1.4 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
EX28DRAFT_0802 +0.7 2.3 hypothetical protein compare
EX28DRAFT_4267 +0.7 1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4515 +0.7 0.7 hypothetical protein compare
EX28DRAFT_3728 +0.7 1.0 L-aspartate 1-decarboxylase (EC 4.1.1.11) compare
EX28DRAFT_0938 +0.7 2.4 Predicted metal-dependent phosphoesterases (PHP family) compare
EX28DRAFT_1414 +0.7 0.6 phenylacetate degradation probable enoyl-CoA hydratase paaB compare
EX28DRAFT_2277 +0.7 0.8 dinuclear metal center protein, YbgI/SA1388 family compare
EX28DRAFT_2407 +0.7 2.0 hypothetical protein compare
EX28DRAFT_4138 +0.7 1.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_1318 +0.7 1.6 hypothetical protein compare
EX28DRAFT_0004 +0.7 2.7 Type IV leader peptidase family compare
EX28DRAFT_2753 +0.7 0.9 Rhodanese-related sulfurtransferase compare
EX28DRAFT_1312 +0.6 1.4 Protein of unknown function (DUF1019) compare
EX28DRAFT_2619 +0.6 3.9 diguanylate cyclase (GGDEF) domain compare
EX28DRAFT_4161 +0.6 2.4 nitrite reductase [NAD(P)H], small subunit compare
EX28DRAFT_1909 +0.6 0.8 Protein of unknown function (DUF3574) compare
EX28DRAFT_3481 +0.6 1.2 hypothetical protein compare
EX28DRAFT_0107 +0.6 1.5 RNA methyltransferase, TrmH family, group 1 compare
EX28DRAFT_3657 +0.6 2.2 Uncharacterized membrane-associated protein compare
EX28DRAFT_4512 +0.6 2.7 Uncharacterized conserved protein compare
EX28DRAFT_3674 +0.6 1.0 acetolactate synthase, small subunit (EC 2.2.1.6) compare
EX28DRAFT_4481 +0.6 3.6 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
EX28DRAFT_2074 +0.6 1.6 type II secretion system protein I compare
EX28DRAFT_4202 +0.6 2.6 phosphonate ABC transporter, permease protein PhnE compare
EX28DRAFT_1943 +0.6 0.8 Protein of unknown function (DUF3225) compare
EX28DRAFT_0612 +0.6 2.2 flagellar export protein FliJ compare
EX28DRAFT_0792 +0.6 1.8 type VI secretion-associated protein, ImpA family compare
EX28DRAFT_1891 +0.6 1.2 Type VIII secretion system (T8SS), CsgF protein compare
EX28DRAFT_2621 +0.6 1.4 hypothetical protein compare
EX28DRAFT_0926 +0.6 0.6 Predicted Fe-S-cluster oxidoreductase compare
EX28DRAFT_1439 +0.6 1.4 Uncharacterized conserved protein compare
EX28DRAFT_4302 +0.6 2.7 Predicted membrane protein compare
EX28DRAFT_3724 +0.6 2.0 ABC-type multidrug transport system, ATPase component compare
EX28DRAFT_1038 +0.6 1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3924 +0.6 1.5 hydroxyisourate hydrolase compare
EX28DRAFT_2457 +0.6 2.7 Protein of unknown function (DUF1471) compare
EX28DRAFT_2136 +0.6 2.4 Asparaginase compare
EX28DRAFT_3676 +0.6 1.3 mraZ protein compare
EX28DRAFT_2866 +0.6 3.8 Uncharacterized domain of BarA-like signal transduction histidine kinases compare
EX28DRAFT_2334 +0.6 4.6 Transcriptional regulator compare
EX28DRAFT_0277 +0.6 1.5 Predicted permeases compare
EX28DRAFT_0948 +0.6 0.5 hypothetical protein compare
EX28DRAFT_1254 +0.6 2.7 Transcriptional regulator compare
EX28DRAFT_0633 +0.6 4.3 two component transcriptional regulator, LuxR family compare
EX28DRAFT_2653 +0.6 2.1 Transcriptional regulator Crl compare
EX28DRAFT_2790 +0.6 3.7 lytic murein transglycosylase B compare
EX28DRAFT_0320 +0.6 2.9 Transcriptional regulator compare
EX28DRAFT_3382 +0.6 2.3 Protein of unknown function (DUF1471) compare
EX28DRAFT_2430 +0.6 2.2 Arabinose efflux permease compare
EX28DRAFT_0505 +0.6 1.6 colanic acid biosynthesis glycosyl transferase WcaI compare
EX28DRAFT_0882 +0.6 1.8 hypothetical protein compare
EX28DRAFT_1260 +0.6 0.7 hypothetical protein compare
EX28DRAFT_1754 +0.6 2.8 Uncharacterized conserved protein compare
EX28DRAFT_2738 +0.6 1.4 ADP-ribose pyrophosphatase compare
EX28DRAFT_2416 +0.6 2.7 2-dehydropantoate 2-reductase compare
EX28DRAFT_1917 +0.6 1.4 pyrimidine utilization protein D compare
EX28DRAFT_1201 +0.5 1.8 phenazine biosynthesis protein PhzF family compare
EX28DRAFT_1610 +0.5 1.7 mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8) compare
EX28DRAFT_2796 +0.5 2.5 transcriptional regulator, DeoR family compare
EX28DRAFT_2825 +0.5 2.7 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components compare
EX28DRAFT_0807 +0.5 3.2 type VI secretion ATPase, ClpV1 family compare
EX28DRAFT_3982 +0.5 1.9 Transcriptional regulators compare
EX28DRAFT_3552 +0.5 1.5 Transcriptional regulatory protein, C terminal compare
EX28DRAFT_2519 +0.5 2.2 nitrogen regulatory protein P-II family compare
EX28DRAFT_1449 +0.5 2.3 Zn-dependent oligopeptidases compare
EX28DRAFT_3893 +0.5 1.3 ribonuclease PH compare
EX28DRAFT_2375 +0.5 1.8 ABC-type Fe2+-enterobactin transport system, periplasmic component compare
EX28DRAFT_3880 +0.5 4.4 Glycosyltransferase compare
EX28DRAFT_2732 +0.5 1.9 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_1118 +0.5 1.5 transcriptional regulator, RpiR family compare
EX28DRAFT_1066 +0.5 2.3 translation elongation factor EF-G compare
EX28DRAFT_1785 +0.5 0.4 Putative hemolysin compare
EX28DRAFT_0570 +0.5 0.7 Putative translation initiation inhibitor, yjgF family compare
EX28DRAFT_0560 +0.5 3.0 RND family efflux transporter, MFP subunit compare
EX28DRAFT_1255 +0.5 1.9 membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family compare
EX28DRAFT_2596 +0.5 4.1 ABC-type long-chain fatty acid transport system, fused permease and ATPase components compare
EX28DRAFT_1109 +0.5 1.0 peroxiredoxin, OsmC subfamily compare
EX28DRAFT_0962 +0.5 1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2568 +0.5 1.2 Peroxiredoxin compare
EX28DRAFT_1125 +0.5 1.9 D-fructose-responsive transcription factor compare
EX28DRAFT_1387 +0.5 0.9 Transcriptional regulator compare
EX28DRAFT_1636 +0.5 1.5 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare
EX28DRAFT_0246 +0.5 2.8 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_1160 +0.5 2.7 Predicted membrane protein compare
EX28DRAFT_1971 +0.5 0.9 Bacterial regulatory proteins, luxR family compare
EX28DRAFT_0904 +0.5 0.9 hypothetical protein compare
EX28DRAFT_1200 +0.5 1.3 Acetyltransferases compare
EX28DRAFT_1302 +0.5 1.9 Bacteriophage Lambda NinG protein compare
EX28DRAFT_2605 +0.5 1.4 ABC-type taurine transport system, ATPase component compare
EX28DRAFT_1276 +0.5 0.9 Bacterial Ig-like domain (group 2) compare
EX28DRAFT_0042 +0.5 2.7 DNA protecting protein DprA compare
EX28DRAFT_4018 +0.5 1.3 Flavodoxins compare
EX28DRAFT_1190 +0.5 3.0 Predicted membrane protein compare
EX28DRAFT_4022 +0.5 3.5 MoxR-like ATPases compare
EX28DRAFT_2674 +0.5 1.8 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain compare
EX28DRAFT_4416 +0.5 1.3 fructose-6-phosphate aldolase, TalC/MipB family compare
EX28DRAFT_1982 +0.5 1.0 Predicted membrane protein compare
EX28DRAFT_4219 +0.5 1.6 ABC-type sugar transport system, auxiliary component compare
EX28DRAFT_0920 +0.5 2.8 Transcriptional regulators compare
EX28DRAFT_0160 +0.5 0.4 hypothetical protein compare
EX28DRAFT_0037 +0.5 2.3 large conductance mechanosensitive channel protein compare
EX28DRAFT_3420 +0.5 1.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
EX28DRAFT_0684 +0.5 1.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3741 +0.5 1.5 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
EX28DRAFT_3452 +0.5 1.0 arginine deiminase (EC 3.5.3.6) compare
EX28DRAFT_3877 +0.5 3.6 hypothetical protein compare
EX28DRAFT_4147 +0.5 2.4 hypothetical protein compare
EX28DRAFT_3902 +0.5 1.8 sodium--glutamate symport carrier (gltS) compare
EX28DRAFT_1182 +0.5 1.8 Trans-aconitate methyltransferase compare
EX28DRAFT_0177 +0.5 1.1 arsenate reductase (glutaredoxin) compare
EX28DRAFT_2158 +0.5 1.9 P pilus assembly protein, chaperone PapD compare
EX28DRAFT_1564 +0.5 1.8 Phage related hypothetical protein (DUF1799) compare
EX28DRAFT_2721 +0.5 1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0447 +0.5 1.1 Glutamate decarboxylase and related PLP-dependent proteins compare
EX28DRAFT_1962 +0.5 1.7 tRNA compare
EX28DRAFT_2769 +0.5 3.0 drug resistance transporter, EmrB/QacA subfamily compare
EX28DRAFT_3948 +0.5 0.9 KAP family P-loop domain compare
EX28DRAFT_3378 +0.5 2.0 Arabinose efflux permease compare
EX28DRAFT_2756 +0.5 1.9 Protein of unknown function (DUF1144) compare
EX28DRAFT_3145 +0.5 2.2 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes compare
EX28DRAFT_3508 +0.5 1.2 Lactoylglutathione lyase and related lyases compare
EX28DRAFT_3476 +0.5 0.6 hypothetical protein compare
EX28DRAFT_4344 +0.5 2.8 RNA compare
EX28DRAFT_2123 +0.5 1.5 Major Facilitator Superfamily compare
EX28DRAFT_1669 +0.5 1.8 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
EX28DRAFT_1413 +0.5 1.8 3-hydroxyacyl-CoA dehydrogenase PaaC compare
EX28DRAFT_1886 +0.5 2.5 Thin aggregative fimbriae synthesis protein compare
EX28DRAFT_4139 +0.5 3.0 Signal transduction histidine kinase compare
EX28DRAFT_2729 +0.5 2.5 RNA polymerase sigma factor, sigma-70 family compare
EX28DRAFT_1418 +0.5 0.7 phenylacetate-CoA oxygenase, PaaI subunit compare
EX28DRAFT_4499 +0.5 2.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2806 +0.5 1.5 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
EX28DRAFT_0466 +0.5 2.0 hypothetical protein compare
EX28DRAFT_4099 +0.4 1.6 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases compare
EX28DRAFT_0261 +0.4 1.3 type VI secretion lipoprotein, VC_A0113 family compare
EX28DRAFT_0425 +0.4 1.4 Protein of unknown function (DUF1282) compare
EX28DRAFT_3148 +0.4 0.9 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
EX28DRAFT_0859 +0.4 2.4 Uncharacterized protein conserved in bacteria compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days in Enterobacter asburiae PDN3

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms