Experiment set1IT021 for Caulobacter crescentus NA1000 Δfur

Compare to:

PYE with CHIR-090 10 ug/mL

200 most important genes:

  gene name fitness t score description  
CCNA_02962 -4.5 -1.6 HicB-family RNAse H fold protein compare
CCNA_02286 -4.0 -1.4 hypothetical protein compare
CCNA_03337 -3.9 -2.7 peptidoglycan-associated lipoprotein pal compare
CCNA_03577 -3.7 -2.6 DNA polymerase I compare
CCNA_02941 -3.5 -1.7 transcription elongation factor greA compare
CCNA_01496 -3.4 -2.0 2-dehydro-3-deoxyphosphooctonate aldolase compare
CCNA_01118 -3.3 -2.2 hypothetical protein compare
CCNA_01556 -3.0 -2.1 LacI-family transcriptional regulator compare
CCNA_01222 -3.0 -12.4 NADH-ubiquinone oxidoreductase compare
CCNA_03358 -2.9 -3.4 glyceraldehyde 3-phosphate dehydrogenase compare
CCNA_01212 -2.8 -11.6 dATP pyrophosphohydrolase compare
CCNA_01223 -2.8 -14.7 acyl-CoA synthetase compare
CCNA_01220 -2.7 -11.0 7-keto-8-aminopelargonate synthetase compare
CCNA_03788 -2.7 -3.7 thiol:disulfide interchange protein tlpA compare
CCNA_00306 -2.7 -5.1 lysophospholipid acyltransferase compare
CCNA_01217 -2.6 -14.7 phosphatidylglycerophosphate synthase compare
CCNA_01218 -2.6 -8.6 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_02387 -2.6 -1.5 glutathione reductase compare
CCNA_01538 -2.5 -1.7 pyruvate phosphate dikinase compare
CCNA_02390 -2.5 -3.3 phosphoglycolate phosphatase compare
CCNA_01676 -2.5 -1.7 hypothetical protein compare
CCNA_01224 -2.5 -7.2 O-antigen membrane transport protein compare
CCNA_02645 -2.5 -2.4 S-adenosyl-methyltransferase MraW compare
CCNA_03336 -2.4 -5.8 Tol system periplasmic component YbgF compare
CCNA_03135 -2.4 -6.2 flagellum-specific ATP synthase fliL compare
CCNA_01002 -2.4 -2.8 flagellar biosyntheis protein FliP compare
CCNA_01213 -2.4 -4.0 YjgP/YjgQ family membrane permease compare
CCNA_01211 -2.3 -5.6 MobA-like NTP transferase domain protein compare
CCNA_02329 -2.3 -1.6 exodeoxyribonuclease VII large subunit compare
CCNA_03704 -2.3 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
CCNA_03916 -2.3 -2.1 hypothetical protein compare
CCNA_01210 -2.3 -6.8 nucleotidyltransferase family protein compare
CCNA_03878 -2.3 -3.3 ferrochelatase compare
CCNA_03650 -2.3 -2.2 mannose-1-phosphate guanyltransferase compare
CCNA_01221 -2.2 -3.7 acyl carrier protein compare
CCNA_03548 -2.2 -6.4 carboxy-terminal processing protease precursor compare
CCNA_03702 -2.2 -1.8 SSU ribosomal protein S1P compare
CCNA_00240 -2.2 -2.1 PTS system, IIA component compare
CCNA_00953 -2.2 -1.6 flagellar motor switch protein FliN compare
CCNA_03052 -2.2 -4.8 acyltransferase compare
CCNA_03790 -2.2 -3.2 hypothetical protein compare
CCNA_02278 -2.1 -1.0 hypothetical protein compare
CCNA_03013 -2.1 -7.6 alkyl hydroperoxide reductase subunit F compare
CCNA_01060 -2.1 -2.7 type I protein secretion ATP-binding protein RsaD compare
CCNA_03786 -2.0 -3.7 heme chaperone heme-lyase compare
CCNA_03732 -2.0 -4.6 N-acyl-D-glucosamine 2-epimerase compare
CCNA_03861 -2.0 -4.1 pyridoxal 5'-phosphate dependent enzyme class III compare
CCNA_01130 -2.0 -3.7 flagellar biosynthesis protein FliR compare
CCNA_02075 -1.9 -6.6 peptidoglycan binding endopeptidase DipM compare
CCNA_03683 -1.9 -2.6 maleylpyruvate isomerase compare
CCNA_00293 -1.9 -2.2 phosphate transport system permease protein pstA compare
CCNA_03859 -1.9 -2.6 two-component response regulator cenR compare
CCNA_01219 -1.9 -5.0 putative cytosolic protein compare
CCNA_03277 -1.9 -4.5 glycosyltransferase compare
CCNA_03755 -1.9 -6.0 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase compare
CCNA_03736 -1.9 -1.3 YGGT family membrane protein compare
CCNA_02320 -1.8 -4.5 2'-deoxycytidine 5'-triphosphate deaminase compare
CCNA_02248 -1.8 -1.7 hypothetical protein compare
CCNA_01129 -1.8 -2.3 flagellar biosynthesis protein FliQ compare
CCNA_00252 -1.8 -8.2 multimodular transpeptidase-transglycosylase PbpX compare
CCNA_03782 -1.7 -1.6 cytochrome c biogenesis ATP-binding export protein CcmA compare
CCNA_03072 -1.7 -1.8 TetR-family transcriptional regulator compare
CCNA_00379 -1.7 -1.6 thiol:disulfide interchange protein dsbA compare
CCNA_02062 -1.7 -4.2 DNA repair protein recN compare
CCNA_01103 -1.7 -5.0 ADP-heptose--LPS heptosyltransferase compare
CCNA_00708 -1.7 -2.3 cobaltochelatase cobT subunit compare
CCNA_02664 -1.7 -1.4 flagellar assembly regulator FliX compare
CCNA_03487 -1.7 -3.2 zonular occludens toxin, zot-like protein compare
CCNA_00135 -1.7 -5.4 trypsin-like peptidase compare
CCNA_01988 -1.6 -1.7 UDP-N-acetylglucosamine O-acyltransferase LpxA compare
CCNA_03835 -1.6 -2.4 3-oxoacyl-(acyl-carrier-protein) synthase compare
CCNA_03975 -1.6 -0.8 hypothetical protein compare
CCNA_02421 -1.6 -1.8 TonB accessory protein exbB compare
CCNA_01226 -1.6 -6.4 hypothetical protein compare
CCNA_03931 -1.6 -0.7 hypothetical protein compare
CCNA_01817 -1.6 -4.4 nitrogen assimilation regulatory protein ntrX compare
CCNA_03026 -1.5 -4.3 two-component response regulator petR compare
CCNA_03872 -1.5 -5.1 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase compare
CCNA_00956 -1.5 -5.0 flagellar biosynthesis protein FlhA compare
CCNA_00001 -1.5 -6.1 ATP/GTP-binding protein compare
CCNA_02094 -1.5 -2.4 MviM-like NAD-dependent oxidoreductase compare
CCNA_01214 -1.5 -2.5 YjgP/YjgQ family membrane permease compare
CCNA_01430 -1.4 -2.4 hypothetical protein compare
CCNA_01061 -1.4 -3.3 type I secretion adaptor protein RsaE compare
CCNA_01407 -1.4 -2.8 hypothetical protein compare
CCNA_01939 -1.4 -1.9 ADP-ribosylglycohydrolase compare
CCNA_01324 -1.4 -1.1 LSU ribosomal protein L30P compare
CCNA_03609 -1.4 -5.6 outer membrane protein compare
CCNA_03415 -1.4 -2.2 aa3 type cytochrome c oxidase subunit IV-related protein compare
CCNA_00512 -1.4 -4.7 GTP-binding protein, probable translation factor compare
CCNA_02892 -1.4 -1.1 hypothetical protein compare
CCNA_01795 -1.3 -2.3 phosphopyruvate hydratase compare
CCNA_02325 -1.3 -2.1 ornithine carbamoyltransferase compare
CCNA_01968 -1.3 -1.2 pentapeptide repeats containing protein compare
CCNA_03114 -1.3 -2.6 hypothetical protein compare
CCNA_02521 -1.3 -1.2 endonuclease involved in recombination compare
CCNA_03273 -1.3 -5.9 hypothetical protein compare
CCNA_03201 -1.3 -8.1 adenylosuccinate synthetase compare
CCNA_03136 -1.3 -3.7 flagellar export protein FliJ compare
CCNA_02650 -1.3 -3.1 N-acetyl-anhydromuramyl-L-alanine amidase compare
CCNA_00893 -1.2 -1.9 helix-turn-helix DNA-binding protein compare
CCNA_02942 -1.2 -3.6 nucleoside-diphosphate-sugar epimerase compare
CCNA_00667 -1.2 -4.9 lipopolysaccharide biosynthesis protein compare
CCNA_02289 -1.2 -2.7 MarR/EmrR family transcriptional regulator compare
CCNA_01638 -1.2 -4.4 beta-lactamase family protein compare
CCNA_01726 -1.2 -1.0 EngA-subfamily GTPase protein compare
CCNA_00264 -1.2 -3.4 C4-dicarboxylate transport protein compare
CCNA_00747 -1.2 -4.6 cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF compare
CCNA_00296 -1.2 -4.5 phosphate regulon response regulator PhoB compare
CCNA_01442 -1.2 -1.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
CCNA_01732 -1.2 -1.5 DNA repair protein RadA compare
CCNA_01279 -1.1 -1.6 inorganic polyphosphate/ATP-NAD kinase compare
CCNA_00197 -1.1 -1.8 LSU ribosomal protein L19P compare
CCNA_01483 -1.1 -1.6 hypothetical protein compare
CCNA_01844 -1.1 -3.7 DNA integration/recombination/inversion protein compare
CCNA_02251 -1.1 -2.6 methylglutaconyl-CoA hydratase compare
CCNA_00134 -1.1 -3.6 surface protein compare
CCNA_03516 -1.1 -1.6 protoheme IX farnesyltransferase coxE compare
CCNA_02599 -1.1 -1.5 antitoxin protein relB-2 compare
CCNA_01085 -1.1 -3.0 DNA-cytosine methyltransferase compare
CCNA_03871 -1.1 -1.4 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
CCNA_R0047 -1.1 -1.6 tRNA-Val compare
CCNA_01692 -1.0 -1.8 GMP synthase GuaA compare
CCNA_00011 -1.0 -2.7 chaperone protein DnaJ compare
CCNA_03927 -1.0 -1.1 hypothetical protein compare
CCNA_00294 -1.0 -1.0 phosphate transport ATP-binding protein pstB compare
CCNA_00128 -1.0 -1.5 argininosuccinate synthase compare
CCNA_02252 -1.0 -4.2 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_01551 -1.0 -1.4 hypothetical protein compare
CCNA_03701 -1.0 -1.0 integration host factor beta-subunit compare
CCNA_01449 -1.0 -2.8 fructose-1,6-bisphosphatase, FIG superfamily compare
CCNA_02085 -1.0 -2.9 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase compare
CCNA_02788 -1.0 -1.9 Xre-family transcriptional regulator compare
CCNA_03652 -1.0 -3.2 ATP-dependent nuclease subunit A compare
CCNA_02487 -1.0 -4.7 4-hydroxybenzoate 3-monooxygenase compare
CCNA_03354 -0.9 -3.8 5-formyltetrahydrofolate cyclo-ligase compare
CCNA_00952 -0.9 -2.4 flagellar assembly protein FlbE/FliH compare
CCNA_03882 -0.9 -1.0 phage gp6-like head-tail connector protein compare
CCNA_00950 -0.9 -3.3 flagellar M-ring protein FliF compare
CCNA_03542 -0.9 -2.8 hypothetical protein compare
CCNA_03988 -0.9 -1.1 hypothetical protein compare
CCNA_02344 -0.9 -1.4 phosphoglycerate mutase compare
CCNA_03496 -0.9 -0.7 hypothetical protein compare
CCNA_03783 -0.9 -0.9 cytochrome c biogenesis ABC transporter permease component CcmB compare
CCNA_00375 -0.9 -3.2 hypothetical protein compare
CCNA_02848 -0.9 -2.3 heme chaperone-apocytochrome heme-lyase compare
CCNA_00044 -0.9 -1.8 ribosome maturation protein RimP compare
CCNA_01367 -0.9 -2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
CCNA_01896 -0.9 -1.0 hypothetical protein compare
CCNA_03185 -0.9 -2.4 glutathione S-transferase compare
CCNA_03987 -0.9 -2.2 hypothetical protein compare
CCNA_01944 -0.9 -2.1 McrA-family restriction endonuclease compare
CCNA_01883 -0.9 -4.5 acyl-CoA dehydrogenase compare
CCNA_01003 -0.8 -2.7 flagellar biosynthesis protein FliO compare
CCNA_01805 -0.8 -1.2 dihydrolipoamide dehydrogenase compare
CCNA_01552 -0.8 -2.8 polar localization protein TipN compare
CCNA_03726 -0.8 -2.3 3-amino-5-hydroxybenzoic acid synthase family compare
CCNA_00481 -0.8 -1.6 HipB transcriptional regulator compare
CCNA_01123 -0.8 -4.2 peptide chain release factor RF-3 compare
CCNA_01837 -0.8 -3.4 transposase, IS30 family compare
CCNA_00304 -0.8 -1.0 3-deoxy-D-manno-octulosonic-acid transferase compare
CCNA_02572 -0.8 -2.6 adenylosuccinate lyase compare
CCNA_02532 -0.8 -2.2 hypothetical protein compare
CCNA_00848 -0.8 -1.1 leucine-responsive regulatory protein compare
CCNA_00588 -0.8 -1.7 SapA domain protein compare
CCNA_01964 -0.8 -0.7 NADH dehydrogenase compare
CCNA_01675 -0.8 -1.0 outer membrane protein compare
CCNA_01131 -0.8 -2.4 flagellar biosynthesis protein FlhB compare
CCNA_02922 -0.8 -1.0 hypothetical protein compare
CCNA_01242 -0.8 -3.3 amino acid permease compare
CCNA_03073 -0.8 -3.6 hypothetical protein compare
CCNA_01893 -0.8 -1.5 SnoaL-like domain protein compare
CCNA_02140 -0.7 -2.4 flagellar motor switch protein fliM compare
CCNA_00892 -0.7 -2.1 phosphoenolpyruvate-protein phosphotransferase PtsP compare
CCNA_02060 -0.7 -1.1 CrcB family protein compare
CCNA_02138 -0.7 -2.3 hypothetical protein compare
CCNA_01889 -0.7 -3.7 long-chain-fatty-acid--CoA ligase compare
CCNA_00049 -0.7 -2.0 HTH transcriptional regulator compare
CCNA_01876 -0.7 -3.9 oxidoreductase compare
CCNA_03895 -0.7 -3.5 hypothetical protein compare
CCNA_02844 -0.7 -0.7 antitoxin protein parD-3 compare
CCNA_02952 -0.7 -3.1 hypothetical protein compare
CCNA_01955 -0.7 -2.6 zinc metalloprotease compare
CCNA_02117 -0.7 -3.1 polyketide cyclase/lipid transport protein compare
CCNA_03992 -0.7 -1.6 UDP-glucose 6-dehydrogenase-related protein compare
CCNA_02232 -0.7 -4.8 TonB-dependent receptor compare
CCNA_03649 -0.7 -3.0 Ser/Thr kinase-related phosphotransferase compare
CCNA_01667 -0.7 -3.6 two-component response regulator kdpE compare
CCNA_R0037 -0.7 -0.4 tRNA-Glu compare
CCNA_02663 -0.7 -1.8 DnaK suppressor protein DksA compare
CCNA_03948 -0.7 -1.9 hypothetical protein compare
CCNA_02481 -0.7 -4.9 TonB-dependent receptor compare
CCNA_00671 -0.7 -2.0 ABC-type polysaccharide/polyol phosphate export system, permease component compare
CCNA_01445 -0.7 -2.0 hypothetical protein compare
CCNA_02870 -0.7 -2.1 phage protein compare
CCNA_00502 -0.7 -2.4 glycosyl transferase family protein compare
CCNA_03657 -0.7 -1.9 tryptophan synthase alpha chain compare
CCNA_03399 -0.7 -2.3 3-polyprenyl-4-hydroxybenzoate decarboxylase compare
CCNA_02478 -0.7 -3.7 dihydrolipoamide acetyltransferase component of acetoin cleaving system compare
CCNA_02449 -0.7 -2.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 Δfur in stress experiments

For stress CHIR-090 across organisms