Experiment set1IT021 for Caulobacter crescentus NA1000 Δfur

Compare to:

PYE with CHIR-090 10 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03995 +1.4 2.0 hypothetical protein compare
CCNA_01802 +1.4 1.4 hypothetical protein compare
CCNA_03767 +1.3 1.3 SSU ribosomal protein S16P compare
CCNA_02030 +1.2 2.6 hypothetical protein compare
CCNA_01361 +1.1 2.7 PepSY superfamily protein compare
CCNA_01790 +1.1 3.2 protein translocase subunit secG compare
CCNA_02703 +1.1 3.3 5-hydroxyisourate hydrolase compare
CCNA_01400 +1.1 1.7 nitrogen regulatory protein GlnK compare
CCNA_00425 +1.0 2.8 hypothetical protein compare
CCNA_00273 +1.0 1.1 peptide deformylase compare
CCNA_03961 +0.9 5.1 hypothetical protein compare
CCNA_01765 +0.9 1.7 peptidase inhibitor, I78 family compare
CCNA_03372 +0.8 2.6 bacterioferritin-associated ferredoxin compare
CCNA_02337 +0.8 1.2 nonspecific lipid-transfer protein compare
CCNA_01754 +0.8 1.0 transglycosylase associated protein compare
CCNA_02036 +0.8 5.4 DNA-binding protein HU compare
CCNA_03439 +0.8 2.5 hypothetical protein compare
CCNA_03972 +0.7 1.8 hypothetical protein compare
CCNA_01375 +0.7 1.2 lactoylglutathione lyase compare
CCNA_R0033 +0.7 1.3 tRNA-Asn compare
CCNA_03400 +0.7 3.2 hypothetical protein compare
CCNA_00028 +0.7 6.0 TonB-dependent receptor compare
CCNA_01993 +0.7 3.4 membrane endopeptidase MmpA compare
CCNA_00896 +0.7 1.1 hypothetical protein compare
CCNA_03329 +0.7 1.1 hypothetical protein compare
CCNA_01779 +0.7 2.3 hypothetical protein compare
CCNA_01526 +0.7 3.6 flagellar biosynthesis regulatory protein flaF compare
CCNA_02279 +0.6 1.6 disulfide bond formation protein B compare
CCNA_01721 +0.6 1.7 RNA polymerase ECF sigma factor compare
CCNA_01041 +0.6 3.2 hypothetical protein compare
CCNA_03937 +0.6 1.5 hypothetical protein compare
CCNA_01655 +0.6 2.8 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_00063 +0.6 0.6 MviN-family integral membrane protein compare
CCNA_01371 +0.6 2.0 hypothetical protein compare
CCNA_02695 +0.6 1.9 hypothetical protein compare
CCNA_03352 +0.6 2.0 YebC/PmpR transcriptional regulator compare
CCNA_01373 +0.6 4.0 hypothetical protein compare
CCNA_01690 +0.6 0.9 MAPEG family membrane protein compare
CCNA_01379 +0.6 2.9 type I secretion outer membrane protein rsaFb compare
CCNA_01059 +0.6 4.5 S-layer protein rsaA compare
CCNA_01613 +0.6 0.9 rod shape-determining protein MreC compare
CCNA_01912 +0.6 1.6 protein ydhR precursor compare
CCNA_02277 +0.6 4.1 TonB-dependent outer membrane channel compare
CCNA_03913 +0.6 1.7 hypothetical protein compare
CCNA_02330 +0.5 2.4 hypothetical protein compare
CCNA_01929 +0.5 1.2 hypothetical protein compare
CCNA_01816 +0.5 3.6 nitrogen regulation protein ntrY compare
CCNA_00027 +0.5 4.2 2OG-Fe(II) oxygenase compare
CCNA_00925 +0.5 3.8 hypothetical protein compare
CCNA_00080 +0.5 1.5 LexA-related transcriptional repressor compare
CCNA_01763 +0.5 2.7 multifunctional aminopeptidase compare
CCNA_01420 +0.5 1.8 NrdR family transcriptional regulator compare
CCNA_02367 +0.5 3.6 CelR-family transcriptional regulator compare
CCNA_03956 +0.5 3.4 hypothetical protein compare
CCNA_R0082 +0.5 1.5 tRNA-Met compare
CCNA_01823 +0.5 1.4 hypothetical protein compare
CCNA_01393 +0.5 3.8 soluble lytic murein transglycosylase compare
CCNA_03766 +0.5 1.8 16S rRNA processing protein RimM compare
CCNA_01729 +0.5 1.9 transporter, sodium/bile acid symporter family compare
CCNA_00852 +0.5 2.1 TetR family transcriptional regulator compare
CCNA_01347 +0.5 3.2 hypothetical protein compare
CCNA_01571 +0.5 1.9 arsenate reductase compare
CCNA_03015 +0.5 2.2 hypothetical protein compare
CCNA_01962 +0.5 2.2 leucyl/phenylalanyl-tRNA--protein transferase compare
CCNA_02797 +0.5 2.0 hypothetical protein compare
CCNA_01873 +0.5 1.3 magnesium and cobalt transport protein corA compare
CCNA_02017 +0.5 1.0 NADH-quinone oxidoreductase chain L compare
CCNA_03579 +0.5 1.6 hypothetical protein compare
CCNA_03982 +0.5 2.0 hypothetical protein compare
CCNA_02957 +0.5 2.6 ArsR-family transcriptional regulator compare
CCNA_01517 +0.5 2.8 hypothetical protein compare
CCNA_00742 +0.5 3.1 HAD superfamily sugar phosphatase compare
CCNA_01840 +0.5 3.0 MerR-family transcriptional regulator compare
CCNA_02301 +0.5 2.4 YdcF-like family protein compare
CCNA_00282 +0.5 1.9 conserved cell surface protein compare
CCNA_02395 +0.5 2.2 hypothetical protein compare
CCNA_02332 +0.5 1.7 chemotaxis receiver protein cheYIII compare
CCNA_02730 +0.5 2.6 glutathione S-transferase compare
CCNA_03809 +0.5 3.0 organic solvent resistance transport system permease compare
CCNA_01712 +0.5 2.6 CopY/TcrY family transcriptional repressor compare
CCNA_02249 +0.5 2.6 conserved hypothetical cytosolic protein compare
CCNA_03472 +0.5 1.7 hypothetical protein compare
CCNA_03893 +0.5 1.6 hypothetical protein compare
CCNA_03929 +0.5 2.8 hypothetical protein compare
CCNA_03034 +0.5 1.5 hypothetical protein compare
CCNA_03728 +0.5 2.6 hypothetical protein compare
CCNA_00225 +0.5 0.6 hypothetical protein compare
CCNA_03710 +0.5 1.7 nitrogen regulatory IIA protein compare
CCNA_03884 +0.5 2.3 hypothetical protein compare
CCNA_03178 +0.5 1.9 MerR-family transcriptional regulator compare
CCNA_00701 +0.5 1.3 cold shock protein CspB compare
CCNA_01727 +0.5 3.0 methyl-accepting chemotaxis protein compare
CCNA_01931 +0.4 2.4 TetR-family transcriptional regulator compare
CCNA_02163 +0.4 3.3 hypothetical protein compare
CCNA_01143 +0.4 2.3 endoribonuclease L-PSP compare
CCNA_01948 +0.4 2.9 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_02392 +0.4 1.9 SnoaL-like domain protein compare
CCNA_01811 +0.4 1.7 competence/damage-inducible protein CinA compare
CCNA_02619 +0.4 3.3 stomatin/prohibitin-related protein compare
CCNA_03940 +0.4 0.8 hypothetical protein compare
CCNA_02758 +0.4 2.0 hypothetical protein compare
CCNA_03044 +0.4 2.0 CpaC-related secretion pathway protein compare
CCNA_02238 +0.4 1.8 hypothetical protein compare
CCNA_01188 +0.4 2.4 FecR family protein compare
CCNA_01976 +0.4 1.7 Indole-3-glycerol phosphate synthase compare
CCNA_01000 +0.4 2.0 hypothetical protein compare
CCNA_01178 +0.4 1.5 conserved hypothetical protein, DUF934 compare
CCNA_00168 +0.4 2.7 polysaccharide export protein compare
CCNA_03405 +0.4 1.9 rpsU-divergently transcribed protein compare
CCNA_01594 +0.4 2.7 ribosomal protein L11 methyltransferase compare
CCNA_03963 +0.4 0.7 hypothetical protein compare
CCNA_00511 +0.4 2.8 carboxymethylenebutenolidase compare
CCNA_03155 +0.4 2.6 PepSY-associated transmembrane protein compare
CCNA_00161 +0.4 2.2 hypothetical protein compare
CCNA_02114 +0.4 0.6 hypothetical protein compare
CCNA_01629 +0.4 2.3 signal peptidase I compare
CCNA_01680 +0.4 2.6 succinylarginine dihydrolase compare
CCNA_03555 +0.4 2.1 esterase lipase family protein compare
CCNA_02593 +0.4 2.2 hypothetical protein compare
CCNA_01094 +0.4 1.6 hypothetical protein compare
CCNA_02021 +0.4 1.9 hypothetical protein compare
CCNA_01573 +0.4 1.6 ArsR-family transcriptional regulator compare
CCNA_01923 +0.4 3.0 ATP-dependent RNA helicase compare
CCNA_02132 +0.4 1.7 LacI-family transcriptional regulator compare
CCNA_01458 +0.4 1.2 hypothetical protein compare
CCNA_00982 +0.4 2.2 ROS/MUCR transcriptional regulator compare
CCNA_01276 +0.4 1.1 cytochrome c5 compare
CCNA_00898 +0.4 2.5 ribosomal large subunit pseudouridine synthase F compare
CCNA_03519 +0.4 1.1 PadR-family transcriptional regulator compare
CCNA_03993 +0.4 1.4 hypothetical protein compare
CCNA_03957 +0.4 1.5 SirA/YedF/YeeD family regulatory protein compare
CCNA_01295 +0.4 2.4 integral membrane protein compare
CCNA_01534 +0.4 1.4 hypothetical protein compare
CCNA_00769 +0.4 2.2 TetR family transcriptional regulator compare
CCNA_00059 +0.4 1.5 oxygen-insensitive NADH nitroreductase compare
CCNA_03121 +0.4 2.0 hypothetical protein compare
CCNA_00675 +0.4 2.2 VapC-like PIN domain ribonuclease compare
CCNA_01575 +0.4 2.7 glucose / sorbosone dehydrogenase compare
CCNA_01582 +0.4 1.1 Glutathione-dependent formaldehyde-activating enzyme compare
CCNA_02265 +0.4 1.0 peptide methionine sulfoxide reductase msrB compare
CCNA_02203 +0.4 2.3 YceI-like domain protein compare
CCNA_03918 +0.4 1.9 hypothetical protein compare
CCNA_02243 +0.4 3.3 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_01804 +0.4 1.7 glutathione peroxidase compare
CCNA_03370 +0.4 2.5 acetyltransferase compare
CCNA_01184 +0.4 2.4 MutT/nudix family hydrolase compare
CCNA_01752 +0.4 1.8 YicC-family protein compare
CCNA_00019 +0.4 2.2 molybdopterin-guanine dinucleotide biosynthesis protein A compare
CCNA_01913 +0.4 2.0 MarR-family transcriptional regulator compare
CCNA_00804 +0.4 2.2 ASC-1 homology domain protein compare
CCNA_01024 +0.4 2.2 hypothetical protein compare
CCNA_02697 +0.4 1.7 hypothetical protein compare
CCNA_02976 +0.4 1.8 MCP-signal associated domain protein compare
CCNA_00542 +0.4 1.7 hypothetical protein compare
CCNA_03557 +0.4 2.7 hypothetical protein compare
CCNA_00874 +0.4 0.4 biotin synthesis protein bioC compare
CCNA_02158 +0.4 2.1 GT2 family glycosyltransferase compare
CCNA_01490 +0.4 2.5 FAD-dependent dehydrogenase compare
CCNA_03892 +0.4 1.8 HD family metal-dependent phosphohydrolase compare
CCNA_03952 +0.4 2.5 hypothetical protein compare
CCNA_01448 +0.4 1.8 fructose-1,6-bisphosphatase, class II compare
CCNA_03970 +0.4 1.4 hypothetical protein compare
CCNA_01055 +0.4 1.4 GT1 family glyscosyl transferase compare
CCNA_02608 +0.4 2.2 hypothetical protein compare
CCNA_03863 +0.4 2.0 hypothetical protein compare
CCNA_01653 +0.4 2.2 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_01502 +0.4 2.7 conserved membrane spanning protein compare
CCNA_00870 +0.4 1.5 hypothetical protein compare
CCNA_02103 +0.4 1.6 hypothetical protein compare
CCNA_02574 +0.4 2.1 MUG-like uracil-DNA glycosylase family protein compare
CCNA_01972 +0.4 2.2 anthranilate synthase component I compare
CCNA_01574 +0.4 2.0 arsenic resistance protein arsH compare
CCNA_00147 +0.4 0.3 hypothetical protein compare
CCNA_01452 +0.4 1.8 hypothetical protein compare
CCNA_01013 +0.4 1.7 histidine utilization repressor compare
CCNA_01057 +0.4 2.5 hypothetical protein compare
CCNA_01236 +0.4 0.5 general stress protein GsiB compare
CCNA_01528 +0.4 2.0 flagellin fljK compare
CCNA_01352 +0.4 2.7 two component sensor histidine kinase compare
CCNA_03425 +0.4 2.2 hypothetical protein compare
CCNA_00761 +0.4 0.3 hypothetical protein compare
CCNA_02986 +0.4 2.7 hypothetical protein compare
CCNA_01933 +0.4 1.1 hypothetical protein compare
CCNA_01530 +0.4 2.4 flagellin FljJ compare
CCNA_01252 +0.3 3.0 soluble lytic murein transglycosylase compare
CCNA_00878 +0.3 0.8 ATP-dependent RNA helicase compare
CCNA_00749 +0.3 0.7 ferrous iron transport protein B compare
CCNA_01949 +0.3 1.4 bactofilin A BacA compare
CCNA_01398 +0.3 1.5 peptidyl-prolyl cis-trans isomerase compare
CCNA_00472 +0.3 2.6 GDP-mannose 4,6 dehydratase compare
CCNA_01434 +0.3 2.2 MerR-family transcriptional regulator compare
CCNA_01820 +0.3 1.9 GTP-binding protein hflX compare
CCNA_02169 +0.3 1.3 thioesterase superfamily protein compare
CCNA_01975 +0.3 1.9 anthranilate phosphoribosyltransferase compare
CCNA_02326 +0.3 0.8 acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase compare
CCNA_01525 +0.3 1.2 flagellar biosynthesis repressor flbT compare
CCNA_01195 +0.3 1.9 LacI-family transcriptional regulator compare
CCNA_01142 +0.3 1.3 hypothetical protein compare
CCNA_02328 +0.3 0.3 cell cycle regulatory protein GcrA compare
CCNA_00471 +0.3 2.3 GDP-L-fucose synthase compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 Δfur in stress experiments

For stress CHIR-090 across organisms