Experiment set1IT020 for Pseudomonas simiae WCS417

Compare to:

LB with Neomycin trisulfate salt hydrate 0.04 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_17215 -4.1 -7.2 peptidylprolyl isomerase compare
PS417_24835 -3.9 -6.8 hypothetical protein compare
PS417_13800 -3.5 -4.0 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_13795 -3.4 -13.6 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_21515 -3.2 -17.8 transcriptional regulator compare
PS417_13820 -3.2 -10.4 UDP-glucose 6-dehydrogenase compare
PS417_13805 -3.1 -13.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_14065 -3.0 -9.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_13790 -2.9 -5.9 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_05500 -2.8 -5.8 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_13785 -2.7 -5.1 hypothetical protein compare
PS417_21125 -2.7 -9.8 phosphoadenosine phosphosulfate reductase compare
PS417_06530 -2.7 -5.6 membrane protein compare
PS417_12855 -2.6 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27245 -2.5 -5.0 aminotransferase DegT compare
PS417_07140 -2.4 -7.1 peptidase M48 compare
PS417_05510 -2.4 -7.5 alpha/beta hydrolase compare
PS417_23770 -2.4 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_05505 -2.4 -11.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_22570 -2.3 -1.5 H-NS histone compare
PS417_13780 -2.3 -7.8 integrase compare
PS417_24155 -2.3 -3.7 ATP-binding protein compare
PS417_22815 -2.1 -10.0 permease compare
PS417_12595 -2.1 -3.0 transcriptional regulator compare
PS417_23775 -2.1 -2.5 exodeoxyribonuclease V subunit beta compare
PS417_27800 -2.1 -9.6 exodeoxyribonuclease III compare
PS417_15095 -2.1 -4.0 hypothetical protein compare
PS417_16515 -2.1 -4.1 Clp protease ClpS compare
PS417_23025 -2.0 -8.0 murein transglycosylase compare
PS417_15105 -2.0 -10.0 membrane protein compare
PS417_17170 -1.9 -10.3 carbon-nitrogen hydrolase compare
PS417_21510 -1.9 -2.3 histidine kinase compare
PS417_04275 -1.9 -13.5 hypothetical protein compare
PS417_05520 -1.9 -9.1 histidine kinase compare
PS417_25645 -1.9 -7.0 peptidase M23 compare
PS417_24705 -1.9 -5.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_15110 -1.9 -10.3 protein BatD compare
PS417_17785 -1.9 -7.3 4-amino-4-deoxy-L-arabinose transferase compare
PS417_06245 -1.8 -2.6 zinc metallopeptidase RseP compare
PS417_20080 -1.8 -3.1 peptidase P60 compare
PS417_24715 -1.8 -7.5 lytic transglycosylase compare
PS417_25650 -1.8 -4.5 anhydro-N-acetylmuramic acid kinase compare
PS417_05525 -1.7 -5.9 Fis family transcriptional regulator compare
PS417_04225 -1.7 -4.7 conjugal transfer protein TraR compare
PS417_05515 -1.7 -9.9 hypothetical protein compare
PS417_07620 -1.7 -2.4 beta-hexosaminidase compare
PS417_19195 -1.7 -3.8 hypothetical protein compare
PS417_05140 -1.7 -2.8 dipicolinate synthase compare
PS417_14085 -1.7 -4.0 hypothetical protein compare
PS417_27445 -1.6 -8.0 membrane protein compare
PS417_24710 -1.6 -8.0 lipoprotein compare
PS417_27435 -1.6 -7.9 polyphosphate kinase compare
PS417_15100 -1.6 -3.4 BatB protein compare
PS417_15085 -1.6 -4.8 ATPase AAA compare
PS417_15380 -1.5 -3.9 hypothetical protein compare
PS417_14960 -1.5 -8.2 ATPase compare
PS417_15090 -1.5 -1.5 hypothetical protein compare
PS417_25790 -1.5 -3.0 aminoglycoside phosphotransferase compare
PS417_00440 -1.5 -8.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_08090 -1.5 -1.3 3-oxoacyl-ACP reductase compare
PS417_12215 -1.5 -5.7 lytic transglycosylase compare
PS417_16510 -1.5 -4.2 Clp protease ClpX compare
PS417_21430 -1.4 -2.6 3-oxoacyl-ACP synthase compare
PS417_07170 -1.4 -4.8 hypothetical protein compare
PS417_21830 -1.4 -2.8 TetR family transcriptional regulator compare
PS417_03935 -1.4 -4.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_03740 -1.4 -3.8 peptidylprolyl isomerase compare
PS417_01210 -1.4 -7.0 hypothetical protein compare
PS417_02630 -1.4 -3.6 NAD synthetase compare
PS417_13490 -1.3 -2.1 hypothetical protein compare
PS417_23385 -1.3 -6.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_13770 -1.3 -5.0 major facilitator transporter compare
PS417_23995 -1.3 -1.1 preprotein translocase subunit SecG compare
PS417_05165 -1.3 -2.5 cytosol aminopeptidase compare
PS417_11900 -1.2 -4.0 conjugal transfer protein TraR compare
PS417_04485 -1.2 -5.2 hypothetical protein compare
PS417_06645 -1.2 -6.1 RNA polymerase-associated protein RapA compare
PS417_27285 -1.2 -8.1 Xaa-Pro aminopeptidase compare
PS417_06095 -1.2 -2.2 energy transducer TonB compare
PS417_15390 -1.2 -2.4 hypothetical protein compare
PS417_11965 -1.1 -1.9 GCN5 family acetyltransferase compare
PS417_08540 -1.1 -3.1 RNA helicase compare
PS417_26985 -1.1 -4.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_13775 -1.1 -2.6 dehydrogenase compare
PS417_27610 -1.1 -2.5 hypothetical protein compare
PS417_21420 -1.1 -6.4 aminodeoxychorismate lyase compare
PS417_28250 -1.1 -7.3 cell wall assembly protein compare
PS417_19825 -1.1 -7.3 ATPase AAA compare
PS417_01990 -1.1 -5.9 cell division protein compare
PS417_27870 -1.1 -3.2 ATP-dependent DNA helicase RecG compare
PS417_26525 -1.0 -6.4 DEAD/DEAH box helicase compare
PS417_07120 -1.0 -4.6 RNA polymerase sigma-H factor compare
PS417_23205 -1.0 -4.6 transcriptional regulator compare
PS417_09695 -1.0 -2.0 hydrolase compare
PS417_27605 -1.0 -4.1 hypothetical protein compare
PS417_28015 -1.0 -4.2 rubredoxin compare
PS417_04440 -1.0 -2.8 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_14805 -1.0 -1.9 AraC family transcriptional regulator compare
PS417_01850 -1.0 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26750 -1.0 -6.2 homoserine acetyltransferase compare
PS417_11930 -1.0 -4.4 hypothetical protein compare
PS417_23950 -1.0 -2.2 polynucleotide phosphorylase/polyadenylase compare
PS417_03385 -0.9 -1.5 flavin reductase compare
PS417_10245 -0.9 -1.4 hypothetical protein compare
PS417_12585 -0.9 -5.2 acriflavine resistance protein B compare
PS417_22840 -0.9 -1.8 tRNA-Met compare
PS417_07755 -0.9 -6.8 hypothetical protein compare
PS417_21680 -0.9 -4.1 succinylglutamate desuccinylase compare
PS417_05695 -0.9 -3.6 transcriptional regulator compare
PS417_06780 -0.9 -2.4 TetR family transcriptional regulator compare
PS417_06100 -0.9 -1.6 SAM-dependent methyltransferase compare
PS417_26260 -0.9 -1.5 hypothetical protein compare
PS417_02770 -0.9 -2.2 membrane protein compare
PS417_27510 -0.9 -4.7 disulfide bond formation protein B compare
PS417_21425 -0.9 -1.3 4-amino-4-deoxychorismate lyase compare
PS417_16390 -0.9 -5.6 peroxiredoxin compare
PS417_15800 -0.9 -4.1 photosynthetic protein synthase I compare
PS417_05495 -0.9 -3.8 structural protein MipA compare
PS417_00915 -0.9 -3.1 aminotransferase compare
PS417_27810 -0.8 -5.0 ribonuclease PH compare
PS417_25680 -0.8 -4.0 short-chain dehydrogenase compare
PS417_00535 -0.8 -2.8 Holliday junction resolvase compare
PS417_17095 -0.8 -2.1 spore coat protein compare
PS417_26685 -0.8 -2.9 hypothetical protein compare
PS417_27875 -0.8 -4.8 histidine kinase compare
PS417_08545 -0.8 -1.8 aromatic ring-opening dioxygenase LigB compare
PS417_17000 -0.8 -2.5 MerR family transcriptional regulator compare
PS417_07540 -0.8 -2.4 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_21595 -0.8 -2.9 flagellar biosynthesis protein FlgN compare
PS417_01435 -0.8 -1.1 hypothetical protein compare
PS417_23380 -0.8 -1.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_20365 -0.8 -2.8 Cro/Cl family transcriptional regulator compare
PS417_23155 -0.8 -3.2 pilus assembly protein PilW compare
PS417_23160 -0.8 -1.6 50S rRNA methyltransferase compare
PS417_12220 -0.8 -3.1 hydroxyacylglutathione hydrolase compare
PS417_05560 -0.7 -1.3 ABC transporter compare
PS417_04070 -0.7 -3.2 porin compare
PS417_04530 -0.7 -1.9 glycerate dehydrogenase compare
PS417_16500 -0.7 -4.0 arginyl-tRNA-protein transferase compare
PS417_14070 -0.7 -1.4 hypothetical protein compare
PS417_14200 -0.7 -2.1 hypothetical protein compare
PS417_15435 -0.7 -2.1 metallophosphatase compare
PS417_10675 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_02950 -0.7 -2.7 tRNA-dihydrouridine synthase B compare
PS417_20880 -0.7 -1.8 GntR family transcriptional regulator compare
PS417_06165 -0.7 -2.1 thiamine biosynthesis protein ThiF compare
PS417_13065 -0.7 -2.1 UDP pyrophosphate phosphatase compare
PS417_22410 -0.7 -3.5 hypothetical protein compare
PS417_25635 -0.7 -2.2 biotin--protein ligase compare
PS417_11825 -0.7 -1.5 transcriptional regulator compare
PS417_13765 -0.7 -4.7 histidine kinase compare
PS417_21015 -0.7 -1.1 EstX protein compare
PS417_16975 -0.7 -2.2 GNAT family acetyltransferase compare
PS417_14080 -0.7 -1.0 hypothetical protein compare
PS417_17160 -0.7 -0.9 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_13855 -0.7 -0.9 acetyl-CoA acetyltransferase compare
PS417_03200 -0.7 -2.3 ArsR family transcriptional regulator compare
PS417_01795 -0.7 -4.6 glucosyltransferase MdoH compare
PS417_06540 -0.7 -0.9 membrane protein compare
PS417_01430 -0.7 -1.8 chromosome segregation protein SMC compare
PS417_21870 -0.7 -1.9 glycerophosphodiester phosphodiesterase compare
PS417_15805 -0.7 -1.2 transporter compare
PS417_03925 -0.7 -2.6 nicotinate-nucleotide pyrophosphorylase compare
PS417_13740 -0.6 -2.0 hypothetical protein compare
PS417_00370 -0.6 -0.9 hypothetical protein compare
PS417_11890 -0.6 -2.2 Inositol transport system ATP-binding protein (from data) compare
PS417_19740 -0.6 -2.1 flagellar biosynthesis protein flip compare
PS417_11905 -0.6 -3.3 chemotaxis protein compare
PS417_28340 -0.6 -1.9 hypothetical protein compare
PS417_02495 -0.6 -3.0 GTPase HflX compare
PS417_05815 -0.6 -2.2 recombinase RecA compare
PS417_13055 -0.6 -1.4 aminotransferase compare
PS417_00920 -0.6 -2.9 diguanylate cyclase compare
PS417_01855 -0.6 -1.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_23375 -0.6 -1.0 cytochrome C oxidase compare
PS417_00085 -0.6 -2.0 16S rRNA methyltransferase compare
PS417_23080 -0.6 -1.8 sugar ABC transporter ATPase compare
PS417_05065 -0.6 -1.5 hypothetical protein compare
PS417_13165 -0.6 -0.9 peroxidase compare
PS417_23475 -0.6 -1.1 hypothetical protein compare
PS417_25275 -0.6 -2.6 hypothetical protein compare
PS417_12375 -0.6 -1.2 serine/threonine protein phosphatase compare
PS417_03815 -0.6 -1.8 DNA transporter compare
PS417_17270 -0.6 -2.8 D-alanyl-D-alanine endopeptidase compare
PS417_03100 -0.6 -0.9 pilus assembly protein compare
PS417_13395 -0.6 -3.9 phosphoglucomutase compare
PS417_04515 -0.6 -4.6 peptidase M48 compare
PS417_22380 -0.6 -3.0 hypothetical protein compare
PS417_18265 -0.6 -1.1 AsnC family transcriptional regulator compare
PS417_23830 -0.6 -4.7 hypothetical protein compare
PS417_24030 -0.6 -1.4 MFS transporter compare
PS417_22630 -0.6 -1.6 hypothetical protein compare
PS417_11175 -0.6 -1.2 AraC family transcriptional regulator compare
PS417_27140 -0.6 -2.7 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_17035 -0.6 -0.9 Cro/Cl family transcriptional regulator compare
PS417_11880 -0.6 -1.3 oxidoreductase compare
PS417_13965 -0.6 -2.1 acetoin utilization protein compare
PS417_00385 -0.6 -0.7 Fur family transcriptional regulator compare
PS417_01620 -0.6 -1.4 preprotein translocase subunit SecB compare
PS417_27290 -0.6 -1.5 hypothetical protein compare


Specific Phenotypes

For 36 genes in this experiment

For stress Neomycin trisulfate salt hydrate in Pseudomonas simiae WCS417

For stress Neomycin trisulfate salt hydrate across organisms